Wall clock time and date at job start Sat Apr 11 2020 05:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36933 * 120.00344 * 2 1 4 4 H 1.08000 * 120.00120 * 148.97050 * 3 2 1 5 5 C 1.38810 * 120.00065 * 328.96612 * 3 2 1 6 6 N 1.31631 * 119.99646 * 2.65580 * 5 3 2 7 7 Si 1.86800 * 120.00485 * 182.65621 * 5 3 2 8 8 H 1.48504 * 109.46901 * 89.99776 * 7 5 3 9 9 H 1.48494 * 109.47358 * 210.00097 * 7 5 3 10 10 H 1.48498 * 109.46702 * 330.00321 * 7 5 3 11 11 C 1.46506 * 119.99985 * 179.72065 * 2 1 3 12 12 H 1.08996 * 109.50125 * 180.21016 * 11 2 1 13 13 C 1.53039 * 109.49788 * 300.27898 * 11 2 1 14 14 C 1.53035 * 109.53957 * 181.31339 * 13 11 2 15 15 C 1.53191 * 109.31247 * 298.63534 * 14 13 11 16 16 N 1.46929 * 108.77940 * 54.63142 * 15 14 13 17 17 C 1.34777 * 120.63068 * 126.39073 * 16 15 14 18 18 O 1.21587 * 119.99911 * 176.08151 * 17 16 15 19 19 C 1.47552 * 119.99965 * 356.07500 * 17 16 15 20 20 C 1.38695 * 120.38596 * 53.48833 * 19 17 16 21 21 C 1.38971 * 120.53848 * 179.97438 * 20 19 17 22 22 C 1.36207 * 121.23539 * 359.97438 * 21 20 19 23 23 C 1.40719 * 120.20288 * 0.02562 * 22 21 20 24 24 N 1.33689 * 120.94927 * 180.02562 * 23 22 21 25 25 C 1.31069 * 121.34121 * 179.30662 * 24 23 22 26 26 C 1.39340 * 121.70771 * 0.61186 * 25 24 23 27 27 C 1.36668 * 119.86587 * 359.58775 * 26 25 24 28 28 C 1.40470 * 118.17341 * 0.02562 * 27 26 25 29 29 C 1.46922 * 118.73745 * 306.39650 * 16 15 14 30 30 H 1.09003 * 109.47298 * 94.11331 * 1 2 3 31 31 H 1.09005 * 109.47495 * 214.11675 * 1 2 3 32 32 H 1.09004 * 109.47299 * 334.11191 * 1 2 3 33 33 H 0.96998 * 119.99472 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.45919 * 301.33165 * 13 11 2 35 35 H 1.09001 * 109.46258 * 61.29193 * 13 11 2 36 36 H 1.09002 * 109.49839 * 58.58349 * 14 13 11 37 37 H 1.09001 * 109.50123 * 178.68062 * 14 13 11 38 38 H 1.09006 * 109.58695 * 174.41983 * 15 14 13 39 39 H 1.08997 * 109.58661 * 294.84342 * 15 14 13 40 40 H 1.08005 * 119.73329 * 359.97438 * 20 19 17 41 41 H 1.07996 * 119.38283 * 180.02562 * 21 20 19 42 42 H 1.08001 * 119.90010 * 180.02562 * 22 21 20 43 43 H 1.07999 * 119.14314 * 180.17794 * 25 24 23 44 44 H 1.07997 * 120.06267 * 179.56874 * 26 25 24 45 45 H 1.08002 * 120.92095 * 179.97438 * 27 26 25 46 46 H 1.09004 * 109.58503 * 293.81475 * 29 16 15 47 47 H 1.08993 * 109.58458 * 173.39187 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1138 1.2527 0.4821 5 6 1.6047 2.3020 -0.6197 6 7 0.4071 2.2347 -1.1619 7 14 2.5708 3.8994 -0.6845 8 1 3.3991 3.9274 -1.9168 9 1 1.6290 5.0475 -0.6949 10 1 3.4525 3.9932 0.5067 11 6 2.1975 -1.2688 0.0062 12 1 3.2692 -1.0701 0.0090 13 6 1.8229 -2.0687 1.2559 14 6 2.6121 -3.3797 1.2801 15 6 2.2493 -4.2122 0.0464 16 7 2.4700 -3.3971 -1.1560 17 6 3.2450 -3.8512 -2.1608 18 8 3.3626 -3.1991 -3.1802 19 6 3.9508 -5.1397 -2.0236 20 6 3.2526 -6.2896 -1.6860 21 6 3.9141 -7.5049 -1.5565 22 6 5.2579 -7.6024 -1.7563 23 6 6.0071 -6.4620 -2.1005 24 7 7.3265 -6.5408 -2.3005 25 6 8.0296 -5.4862 -2.6344 26 6 7.4419 -4.2318 -2.7849 27 6 6.0973 -4.0825 -2.5908 28 6 5.3476 -5.2178 -2.2410 29 6 1.8299 -2.0774 -1.2420 30 1 -0.3634 -0.0737 -1.0250 31 1 -0.3634 -0.8508 0.5764 32 1 -0.3634 0.9246 0.4487 33 1 0.0262 3.0147 -1.5946 34 1 2.0608 -1.4853 2.1454 35 1 0.7553 -2.2879 1.2404 36 1 3.6801 -3.1617 1.2706 37 1 2.3624 -3.9382 2.1822 38 1 2.8800 -5.1004 0.0065 39 1 1.2015 -4.5077 0.1002 40 1 2.1862 -6.2401 -1.5223 41 1 3.3520 -8.3887 -1.2932 42 1 5.7500 -8.5579 -1.6504 43 1 9.0932 -5.5909 -2.7902 44 1 8.0477 -3.3793 -3.0540 45 1 5.6242 -3.1181 -2.7026 46 1 0.7479 -2.1988 -1.2932 47 1 2.1838 -1.5570 -2.1318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027513772.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:00 Heat of formation + Delta-G solvation = 53.526316 kcal Electronic energy + Delta-G solvation = -29692.119680 eV Core-core repulsion = 25840.672983 eV Total energy + Delta-G solvation = -3851.446696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28061 -39.77061 -37.55390 -37.06438 -35.10337 -33.60723 -32.43875 -31.34193 -30.81823 -30.49252 -28.64537 -26.01858 -25.71720 -24.45279 -23.95440 -23.53545 -22.70662 -21.65210 -19.81205 -18.80634 -18.50869 -17.34529 -17.11470 -16.78750 -16.45048 -15.70949 -15.22058 -14.99495 -14.70433 -14.44396 -14.28840 -14.14847 -14.02348 -13.64501 -13.53019 -13.30126 -13.11989 -12.67476 -12.52712 -12.41720 -12.26719 -11.93369 -11.87678 -11.59770 -11.16348 -11.03871 -10.83540 -10.73339 -10.64924 -10.39755 -10.35838 -10.21649 -10.08770 -9.93038 -9.76333 -9.48390 -9.02368 -8.58137 -8.46416 -8.34829 -6.68270 -5.79920 -3.30225 0.02240 0.58251 1.63332 2.52189 2.80636 3.15268 3.37119 3.43336 3.43793 3.88665 4.03688 4.26999 4.45385 4.51975 4.56938 4.65231 4.79646 4.88009 4.92807 5.07561 5.12363 5.17769 5.29345 5.38475 5.51093 5.53376 5.57857 5.59605 5.71599 5.75420 5.86743 5.87924 5.96907 6.02371 6.10266 6.12502 6.20802 6.27366 6.35634 6.47016 6.53821 6.64061 6.78235 6.91538 6.95085 7.38986 7.54952 7.66427 7.71313 7.79159 8.23297 8.43031 9.22067 9.81086 10.33834 11.26175 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.003215 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.647835 B = 8707.838627 C = 9801.894564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.591 5.591 3 C -0.261 4.261 4 H 0.066 0.934 5 C 0.012 3.988 6 N -0.903 5.903 7 Si 0.903 3.097 8 H -0.285 1.285 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.169 3.831 12 H 0.064 0.936 13 C -0.134 4.134 14 C -0.130 4.130 15 C 0.097 3.903 16 N -0.595 5.595 17 C 0.553 3.447 18 O -0.531 6.531 19 C -0.091 4.091 20 C -0.088 4.088 21 C -0.105 4.105 22 C -0.079 4.079 23 C 0.123 3.877 24 N -0.478 5.478 25 C 0.134 3.866 26 C -0.175 4.175 27 C -0.045 4.045 28 C -0.070 4.070 29 C 0.098 3.902 30 H 0.016 0.984 31 H -0.007 1.007 32 H 0.060 0.940 33 H 0.254 0.746 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.161 0.839 44 H 0.140 0.860 45 H 0.147 0.853 46 H 0.064 0.936 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.099 -20.193 1.882 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.313 5.313 3 C -0.391 4.391 4 H 0.083 0.917 5 C -0.187 4.187 6 N -0.547 5.547 7 Si 0.733 3.267 8 H -0.212 1.212 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.059 3.941 12 H 0.082 0.918 13 C -0.174 4.174 14 C -0.169 4.169 15 C -0.026 4.026 16 N -0.327 5.327 17 C 0.340 3.660 18 O -0.409 6.409 19 C -0.095 4.095 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.097 4.097 23 C 0.002 3.998 24 N -0.186 5.186 25 C -0.038 4.038 26 C -0.195 4.195 27 C -0.071 4.071 28 C -0.073 4.073 29 C -0.025 4.025 30 H 0.034 0.966 31 H 0.011 0.989 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.156 0.844 43 H 0.178 0.822 44 H 0.158 0.842 45 H 0.165 0.835 46 H 0.082 0.918 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.323 -20.514 1.395 22.182 hybrid contribution -0.037 1.776 -0.253 1.794 sum 8.285 -18.738 1.142 20.520 Atomic orbital electron populations 1.20829 0.82686 0.97334 0.97506 1.43830 1.01764 0.99890 1.85779 1.19161 1.03106 0.87346 1.29481 0.91664 1.25273 0.96946 0.99150 0.97373 1.70032 1.15141 1.29383 1.40110 0.86283 0.79389 0.83013 0.78037 1.21210 1.21623 1.20439 1.20658 0.96496 0.86325 0.90578 0.91788 1.22084 0.99701 0.94969 1.00601 1.21897 1.01039 0.97267 0.96723 1.22024 1.01480 0.94265 0.84801 1.48265 1.47915 1.19267 1.17281 1.18185 0.79161 0.85005 0.83673 1.90823 1.63491 1.58152 1.28413 1.20008 0.93062 0.94655 1.01765 1.21410 1.00475 0.91657 0.97094 1.20815 0.94348 0.97698 0.99609 1.20921 0.93533 0.97489 0.97780 1.18805 0.90101 0.92194 0.98659 1.68051 1.05923 1.32005 1.12597 1.22992 1.00224 0.88004 0.92623 1.21979 0.95733 0.99432 1.02347 1.21737 0.94020 0.98949 0.92421 1.18569 0.92982 0.94724 1.01026 1.22600 0.96908 0.80416 1.02560 0.96561 0.98892 0.92082 0.93556 0.91706 0.92152 0.91825 0.91166 0.89662 0.91175 0.84637 0.84554 0.84412 0.82215 0.84170 0.83507 0.91759 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 7.97 59.84 0.48 4.33 16 2 N -0.59 -14.46 2.81 -173.34 -0.49 -14.95 16 3 C -0.26 -7.10 9.50 -15.06 -0.14 -7.25 16 4 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 5 C 0.01 0.33 5.31 -17.43 -0.09 0.23 16 6 N -0.90 -26.00 10.54 55.49 0.58 -25.41 16 7 Si 0.90 21.73 29.55 -169.99 -5.02 16.71 16 8 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 C 0.17 3.38 2.75 -67.81 -0.19 3.20 16 12 H 0.06 1.36 7.89 -51.93 -0.41 0.95 16 13 C -0.13 -2.16 5.10 -26.69 -0.14 -2.30 16 14 C -0.13 -1.63 6.08 -26.61 -0.16 -1.79 16 15 C 0.10 1.15 5.49 -3.71 -0.02 1.13 16 16 N -0.59 -9.28 2.97 -173.99 -0.52 -9.80 16 17 C 0.55 9.11 6.52 -12.46 -0.08 9.02 16 18 O -0.53 -10.76 15.10 5.29 0.08 -10.68 16 19 C -0.09 -1.23 4.93 -104.66 -0.52 -1.74 16 20 C -0.09 -0.89 7.40 -39.14 -0.29 -1.18 16 21 C -0.10 -0.88 9.92 -40.04 -0.40 -1.28 16 22 C -0.08 -0.77 9.96 -39.38 -0.39 -1.16 16 23 C 0.12 1.55 6.60 -84.87 -0.56 0.99 16 24 N -0.48 -5.84 10.34 -10.99 -0.11 -5.95 16 25 C 0.13 1.37 11.15 -17.47 -0.19 1.17 16 26 C -0.18 -1.88 10.03 -39.74 -0.40 -2.28 16 27 C -0.05 -0.62 9.29 -39.31 -0.37 -0.98 16 28 C -0.07 -0.96 5.76 -106.53 -0.61 -1.58 16 29 C 0.10 1.88 5.78 -3.71 -0.02 1.86 16 30 H 0.02 0.41 7.80 -51.93 -0.40 0.01 16 31 H -0.01 -0.15 6.46 -51.93 -0.34 -0.49 16 32 H 0.06 1.61 6.83 -51.93 -0.35 1.25 16 33 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.97 6.73 -51.93 -0.35 0.62 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.86 4.71 -51.93 -0.24 0.61 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.14 1.14 7.30 -52.48 -0.38 0.76 16 41 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 42 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.15 2.21 6.46 -52.49 -0.34 1.87 16 46 H 0.06 1.23 7.52 -51.93 -0.39 0.84 16 47 H 0.09 2.08 7.03 -51.93 -0.36 1.71 16 LS Contribution 371.86 15.07 5.60 5.60 Total: -1.00 -32.64 371.86 -10.47 -43.12 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.50 Total: 0.96 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -4.09 Total: 0.40 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.53 Total: -56.11 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.08 Total: -10.68 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.64 -10.47 -43.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027513772.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.643 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds