Wall clock time and date at job start Sat Apr 11 2020 05:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36933 * 120.00344 * 2 1 4 4 H 1.08000 * 120.00120 * 148.97050 * 3 2 1 5 5 C 1.38810 * 120.00065 * 328.96612 * 3 2 1 6 6 N 1.31631 * 119.99646 * 2.65580 * 5 3 2 7 7 Si 1.86800 * 120.00485 * 182.65621 * 5 3 2 8 8 H 1.48504 * 109.46901 * 89.99776 * 7 5 3 9 9 H 1.48494 * 109.47358 * 210.00097 * 7 5 3 10 10 H 1.48498 * 109.46702 * 330.00321 * 7 5 3 11 11 C 1.46506 * 119.99985 * 179.72065 * 2 1 3 12 12 H 1.08996 * 109.50125 * 180.21016 * 11 2 1 13 13 C 1.53039 * 109.49788 * 300.27898 * 11 2 1 14 14 C 1.53035 * 109.53957 * 181.31339 * 13 11 2 15 15 C 1.53191 * 109.31247 * 298.63534 * 14 13 11 16 16 N 1.46929 * 108.77940 * 54.63142 * 15 14 13 17 17 C 1.34777 * 120.63068 * 126.39073 * 16 15 14 18 18 O 1.21587 * 119.99911 * 176.08151 * 17 16 15 19 19 C 1.47552 * 119.99965 * 356.07500 * 17 16 15 20 20 C 1.38695 * 120.38596 * 53.48833 * 19 17 16 21 21 C 1.38971 * 120.53848 * 179.97438 * 20 19 17 22 22 C 1.36207 * 121.23539 * 359.97438 * 21 20 19 23 23 C 1.40719 * 120.20288 * 0.02562 * 22 21 20 24 24 N 1.33689 * 120.94927 * 180.02562 * 23 22 21 25 25 C 1.31069 * 121.34121 * 179.30662 * 24 23 22 26 26 C 1.39340 * 121.70771 * 0.61186 * 25 24 23 27 27 C 1.36668 * 119.86587 * 359.58775 * 26 25 24 28 28 C 1.40470 * 118.17341 * 0.02562 * 27 26 25 29 29 C 1.46922 * 118.73745 * 306.39650 * 16 15 14 30 30 H 1.09003 * 109.47298 * 94.11331 * 1 2 3 31 31 H 1.09005 * 109.47495 * 214.11675 * 1 2 3 32 32 H 1.09004 * 109.47299 * 334.11191 * 1 2 3 33 33 H 0.96998 * 119.99472 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.45919 * 301.33165 * 13 11 2 35 35 H 1.09001 * 109.46258 * 61.29193 * 13 11 2 36 36 H 1.09002 * 109.49839 * 58.58349 * 14 13 11 37 37 H 1.09001 * 109.50123 * 178.68062 * 14 13 11 38 38 H 1.09006 * 109.58695 * 174.41983 * 15 14 13 39 39 H 1.08997 * 109.58661 * 294.84342 * 15 14 13 40 40 H 1.08005 * 119.73329 * 359.97438 * 20 19 17 41 41 H 1.07996 * 119.38283 * 180.02562 * 21 20 19 42 42 H 1.08001 * 119.90010 * 180.02562 * 22 21 20 43 43 H 1.07999 * 119.14314 * 180.17794 * 25 24 23 44 44 H 1.07997 * 120.06267 * 179.56874 * 26 25 24 45 45 H 1.08002 * 120.92095 * 179.97438 * 27 26 25 46 46 H 1.09004 * 109.58503 * 293.81475 * 29 16 15 47 47 H 1.08993 * 109.58458 * 173.39187 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1138 1.2527 0.4821 5 6 1.6047 2.3020 -0.6197 6 7 0.4071 2.2347 -1.1619 7 14 2.5708 3.8994 -0.6845 8 1 3.3991 3.9274 -1.9168 9 1 1.6290 5.0475 -0.6949 10 1 3.4525 3.9932 0.5067 11 6 2.1975 -1.2688 0.0062 12 1 3.2692 -1.0701 0.0090 13 6 1.8229 -2.0687 1.2559 14 6 2.6121 -3.3797 1.2801 15 6 2.2493 -4.2122 0.0464 16 7 2.4700 -3.3971 -1.1560 17 6 3.2450 -3.8512 -2.1608 18 8 3.3626 -3.1991 -3.1802 19 6 3.9508 -5.1397 -2.0236 20 6 3.2526 -6.2896 -1.6860 21 6 3.9141 -7.5049 -1.5565 22 6 5.2579 -7.6024 -1.7563 23 6 6.0071 -6.4620 -2.1005 24 7 7.3265 -6.5408 -2.3005 25 6 8.0296 -5.4862 -2.6344 26 6 7.4419 -4.2318 -2.7849 27 6 6.0973 -4.0825 -2.5908 28 6 5.3476 -5.2178 -2.2410 29 6 1.8299 -2.0774 -1.2420 30 1 -0.3634 -0.0737 -1.0250 31 1 -0.3634 -0.8508 0.5764 32 1 -0.3634 0.9246 0.4487 33 1 0.0262 3.0147 -1.5946 34 1 2.0608 -1.4853 2.1454 35 1 0.7553 -2.2879 1.2404 36 1 3.6801 -3.1617 1.2706 37 1 2.3624 -3.9382 2.1822 38 1 2.8800 -5.1004 0.0065 39 1 1.2015 -4.5077 0.1002 40 1 2.1862 -6.2401 -1.5223 41 1 3.3520 -8.3887 -1.2932 42 1 5.7500 -8.5579 -1.6504 43 1 9.0932 -5.5909 -2.7902 44 1 8.0477 -3.3793 -3.0540 45 1 5.6242 -3.1181 -2.7026 46 1 0.7479 -2.1988 -1.2932 47 1 2.1838 -1.5570 -2.1318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027513772.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:59 Heat of formation + Delta-G solvation = 33.900128 kcal Electronic energy + Delta-G solvation = -29692.970735 eV Core-core repulsion = 25840.672983 eV Total energy + Delta-G solvation = -3852.297752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.23868 -40.95050 -38.97542 -37.97356 -36.78807 -34.54727 -34.00540 -32.88162 -31.67424 -31.56217 -30.15808 -28.05811 -26.90744 -25.44971 -25.33062 -24.54497 -23.84808 -23.06204 -21.15807 -20.10705 -19.45378 -18.83319 -18.22971 -18.04234 -17.59371 -17.02950 -16.89421 -16.14799 -15.78785 -15.62038 -15.40330 -15.33409 -15.23056 -15.13887 -14.80729 -14.43563 -14.24387 -14.17790 -13.87810 -13.75551 -13.56005 -13.11407 -13.01805 -12.82524 -12.73157 -12.51282 -12.39234 -12.23052 -12.16594 -12.10946 -11.80003 -11.70484 -11.62538 -11.41213 -11.18531 -10.64931 -10.51534 -9.83526 -9.79285 -9.29773 -8.68389 -7.91608 -5.43761 -0.84442 -0.23376 0.68184 1.40778 1.43829 1.48315 1.51823 1.78389 2.00949 2.45628 3.02170 3.24595 3.25684 3.31064 3.59702 3.69229 3.74454 3.81844 3.93229 3.96203 4.02508 4.09948 4.13784 4.20309 4.33454 4.39440 4.43462 4.56322 4.64595 4.72335 4.74748 4.77394 4.84360 4.94129 4.98871 5.01663 5.05834 5.11490 5.25804 5.27190 5.29465 5.38256 5.41670 5.49025 5.53173 5.59693 5.71206 5.76902 6.30950 6.34139 6.81168 6.97483 7.13161 7.81502 8.27642 9.12697 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.003215 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.647835 B = 8707.838627 C = 9801.894564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.609 5.609 3 C -0.272 4.272 4 H 0.063 0.937 5 C -0.042 4.042 6 N -0.932 5.932 7 Si 0.966 3.034 8 H -0.289 1.289 9 H -0.289 1.289 10 H -0.267 1.267 11 C 0.168 3.832 12 H 0.041 0.959 13 C -0.122 4.122 14 C -0.122 4.122 15 C 0.094 3.906 16 N -0.593 5.593 17 C 0.552 3.448 18 O -0.585 6.585 19 C -0.123 4.123 20 C -0.068 4.068 21 C -0.092 4.092 22 C -0.074 4.074 23 C 0.104 3.896 24 N -0.488 5.488 25 C 0.133 3.867 26 C -0.165 4.165 27 C -0.082 4.082 28 C -0.087 4.087 29 C 0.115 3.885 30 H -0.010 1.010 31 H 0.030 0.970 32 H 0.032 0.968 33 H 0.250 0.750 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.159 0.841 41 H 0.183 0.817 42 H 0.162 0.838 43 H 0.199 0.801 44 H 0.162 0.838 45 H 0.116 0.884 46 H 0.064 0.936 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.900 -24.067 3.713 25.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.331 5.331 3 C -0.403 4.403 4 H 0.081 0.919 5 C -0.238 4.238 6 N -0.577 5.577 7 Si 0.793 3.207 8 H -0.216 1.216 9 H -0.215 1.215 10 H -0.191 1.191 11 C 0.060 3.940 12 H 0.059 0.941 13 C -0.162 4.162 14 C -0.161 4.161 15 C -0.027 4.027 16 N -0.325 5.325 17 C 0.341 3.659 18 O -0.466 6.466 19 C -0.127 4.127 20 C -0.086 4.086 21 C -0.111 4.111 22 C -0.092 4.092 23 C -0.017 4.017 24 N -0.196 5.196 25 C -0.040 4.040 26 C -0.185 4.185 27 C -0.108 4.108 28 C -0.089 4.089 29 C -0.009 4.009 30 H 0.008 0.992 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.115 0.885 40 H 0.177 0.823 41 H 0.200 0.800 42 H 0.180 0.820 43 H 0.215 0.785 44 H 0.180 0.820 45 H 0.134 0.866 46 H 0.083 0.917 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.137 -24.442 3.274 26.298 hybrid contribution -0.214 2.877 -0.826 3.001 sum 8.923 -21.565 2.448 23.466 Atomic orbital electron populations 1.20538 0.82593 0.97309 0.96180 1.44034 1.02105 1.00788 1.86204 1.19455 1.03025 0.88745 1.29027 0.91891 1.25992 0.97871 1.02340 0.97585 1.70194 1.16398 1.29900 1.41226 0.85303 0.78074 0.79271 0.78031 1.21606 1.21502 1.19143 1.20773 0.94754 0.85408 0.93039 0.94087 1.21916 1.00733 0.96140 0.97377 1.21878 0.99800 0.95565 0.98812 1.22378 1.03695 0.94225 0.82415 1.48261 1.47417 1.18114 1.18669 1.18755 0.78481 0.85861 0.82812 1.90782 1.65031 1.60108 1.30673 1.19759 0.93163 0.93935 1.05853 1.21778 1.01457 0.91021 0.94392 1.21253 0.93913 0.98196 0.97761 1.21323 0.94191 0.97420 0.96314 1.19185 0.90558 0.92514 0.99471 1.68123 1.05948 1.32627 1.12874 1.23573 1.01780 0.87089 0.91522 1.22271 0.94759 1.00803 1.00644 1.21657 0.95566 0.98200 0.95366 1.18720 0.93303 0.95288 1.01615 1.22027 0.96729 0.82229 0.99956 0.99206 0.95210 0.94902 0.94059 0.92504 0.91331 0.92754 0.87094 0.87097 0.88522 0.82343 0.79993 0.82019 0.78461 0.82016 0.86641 0.91743 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.81 7.97 127.77 1.02 9.83 16 2 N -0.61 -30.93 2.81 -702.33 -1.97 -32.90 16 3 C -0.27 -15.39 9.50 84.03 0.80 -14.59 16 4 H 0.06 3.50 7.83 -2.91 -0.02 3.48 16 5 C -0.04 -2.40 5.31 84.86 0.45 -1.95 16 6 N -0.93 -55.94 10.54 21.65 0.23 -55.72 16 7 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 8 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 9 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 C 0.17 6.97 2.75 45.07 0.12 7.09 16 12 H 0.04 1.85 7.89 -2.39 -0.02 1.83 16 13 C -0.12 -3.79 5.10 30.62 0.16 -3.63 16 14 C -0.12 -2.69 6.08 30.67 0.19 -2.50 16 15 C 0.09 1.94 5.49 86.36 0.47 2.41 16 16 N -0.59 -18.66 2.97 -822.64 -2.45 -21.10 16 17 C 0.55 18.95 6.52 86.70 0.57 19.52 16 18 O -0.58 -25.84 15.10 -3.99 -0.06 -25.90 16 19 C -0.12 -3.26 4.93 -19.89 -0.10 -3.36 16 20 C -0.07 -1.15 7.40 22.56 0.17 -0.99 16 21 C -0.09 -1.09 9.92 21.97 0.22 -0.87 16 22 C -0.07 -1.18 9.96 22.40 0.22 -0.95 16 23 C 0.10 2.41 6.60 40.28 0.27 2.68 16 24 N -0.49 -10.99 10.34 -188.67 -1.95 -12.94 16 25 C 0.13 2.49 11.15 85.07 0.95 3.44 16 26 C -0.17 -3.56 10.03 22.17 0.22 -3.33 16 27 C -0.08 -2.36 9.29 22.45 0.21 -2.15 16 28 C -0.09 -2.38 5.76 -21.10 -0.12 -2.51 16 29 C 0.12 4.63 5.78 86.36 0.50 5.13 16 30 H -0.01 -0.56 7.80 -2.39 -0.02 -0.58 16 31 H 0.03 1.22 6.46 -2.38 -0.02 1.21 16 32 H 0.03 1.78 6.83 -2.38 -0.02 1.76 16 33 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 2.02 6.73 -2.39 -0.02 2.01 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.11 1.79 4.71 -2.38 -0.01 1.78 16 39 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.16 1.93 7.30 -2.91 -0.02 1.91 16 41 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 42 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 43 H 0.20 2.02 8.06 -2.91 -0.02 2.00 16 44 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 45 H 0.12 3.98 6.46 -2.91 -0.02 3.96 16 46 H 0.06 2.55 7.52 -2.39 -0.02 2.54 16 47 H 0.04 2.21 7.03 -2.39 -0.02 2.20 16 Total: -1.00 -78.66 371.86 3.12 -75.54 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.98 Total: 11.61 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 6.31 Total: 13.27 kcal Atomic # 7 Polarization: -116.53 SS G_CDS: -6.14 Total: -122.67 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.06 Total: -25.90 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -78.66 3.12 -75.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027513772.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.441 kcal (2) G-P(sol) polarization free energy of solvation -78.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds