Wall clock time and date at job start Sat Apr 11 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36933 * 119.99571 * 2 1 4 4 H 1.08000 * 119.99581 * 204.32941 * 3 2 1 5 5 C 1.38806 * 120.00493 * 24.33016 * 3 2 1 6 6 N 1.31622 * 120.00130 * 8.55499 * 5 3 2 7 7 Si 1.86804 * 120.00076 * 188.56011 * 5 3 2 8 8 H 1.48501 * 109.47375 * 89.99769 * 7 5 3 9 9 H 1.48499 * 109.47087 * 210.00002 * 7 5 3 10 10 H 1.48498 * 109.46794 * 329.99498 * 7 5 3 11 11 C 1.46496 * 120.00040 * 179.97438 * 2 1 3 12 12 H 1.08999 * 109.49769 * 180.02562 * 11 2 1 13 13 C 1.53043 * 109.49682 * 60.00057 * 11 2 1 14 14 C 1.53040 * 109.53832 * 178.68562 * 13 11 2 15 15 C 1.53188 * 109.31320 * 61.36238 * 14 13 11 16 16 N 1.46930 * 108.77850 * 305.36527 * 15 14 13 17 17 C 1.34769 * 120.63191 * 233.58301 * 16 15 14 18 18 O 1.21592 * 120.00251 * 183.91976 * 17 16 15 19 19 C 1.47554 * 120.00127 * 3.92662 * 17 16 15 20 20 C 1.38691 * 120.38587 * 306.18615 * 19 17 16 21 21 C 1.38979 * 120.53937 * 180.02562 * 20 19 17 22 22 C 1.36213 * 121.23149 * 359.97177 * 21 20 19 23 23 C 1.40709 * 120.20312 * 0.05706 * 22 21 20 24 24 N 1.33690 * 120.93878 * 179.97438 * 23 22 21 25 25 C 1.31068 * 121.33885 * 180.02562 * 24 23 22 26 26 C 1.39337 * 121.70818 * 359.97438 * 25 24 23 27 27 C 1.36672 * 119.86717 * 0.02562 * 26 25 24 28 28 C 1.40474 * 118.17211 * 359.97438 * 27 26 25 29 29 C 1.46930 * 118.73291 * 53.86429 * 16 15 14 30 30 H 1.09003 * 109.47240 * 275.13432 * 1 2 3 31 31 H 1.08997 * 109.47077 * 35.13459 * 1 2 3 32 32 H 1.09002 * 109.46931 * 155.13322 * 1 2 3 33 33 H 0.96996 * 119.99867 * 180.02562 * 6 5 3 34 34 H 1.08992 * 109.45949 * 58.66534 * 13 11 2 35 35 H 1.09006 * 109.45987 * 298.70489 * 13 11 2 36 36 H 1.09007 * 109.49749 * 301.41535 * 14 13 11 37 37 H 1.09000 * 109.52539 * 181.33616 * 14 13 11 38 38 H 1.09010 * 109.58795 * 185.58048 * 15 14 13 39 39 H 1.08998 * 109.58784 * 65.15886 * 15 14 13 40 40 H 1.08000 * 119.73426 * 0.03976 * 20 19 17 41 41 H 1.07992 * 119.38294 * 180.02562 * 21 20 19 42 42 H 1.08004 * 119.89381 * 180.02562 * 22 21 20 43 43 H 1.08002 * 119.14547 * 179.97438 * 25 24 23 44 44 H 1.07996 * 120.06655 * 179.73925 * 26 25 24 45 45 H 1.08006 * 120.91884 * 179.97438 * 27 26 25 46 46 H 1.08997 * 109.58907 * 65.92669 * 29 16 15 47 47 H 1.09006 * 109.58174 * 186.35429 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1577 1.2275 -0.3853 5 6 1.5481 2.3347 0.4952 6 7 0.3906 2.2558 1.1168 7 14 2.3813 3.9926 0.2795 8 1 1.9357 4.6083 -0.9963 9 1 2.0163 4.8811 1.4120 10 1 3.8543 3.8064 0.2514 11 6 2.1976 -1.2687 0.0006 12 1 3.2693 -1.0700 0.0009 13 6 1.8283 -2.0723 -1.2485 14 6 2.6176 -3.3833 -1.2655 15 6 2.2497 -4.2123 -0.0309 16 7 2.4654 -3.3936 1.1699 17 6 3.2357 -3.8450 2.1794 18 8 3.3491 -3.1899 3.1975 19 6 3.9417 -5.1342 2.0493 20 6 3.2436 -6.2860 1.7185 21 6 3.9052 -7.5020 1.5956 22 6 5.2493 -7.5980 1.7943 23 6 5.9983 -6.4556 2.1320 24 7 7.3180 -6.5331 2.3308 25 6 8.0232 -5.4742 2.6462 26 6 7.4355 -4.2189 2.7892 27 6 6.0901 -4.0717 2.5995 28 6 5.3394 -5.2100 2.2617 29 6 1.8202 -2.0761 1.2519 30 1 -0.3634 0.0920 1.0236 31 1 -0.3633 0.8404 -0.5914 32 1 -0.3633 -0.9324 -0.4322 33 1 -0.0299 3.0586 1.4625 34 1 2.0699 -1.4914 -2.1385 35 1 0.7605 -2.2914 -1.2368 36 1 3.6855 -3.1652 -1.2522 37 1 2.3722 -3.9446 -2.1671 38 1 2.8802 -5.1003 0.0142 39 1 1.2021 -4.5080 -0.0883 40 1 2.1771 -6.2377 1.5550 41 1 3.3432 -8.3872 1.3369 42 1 5.7416 -8.5539 1.6927 43 1 9.0873 -5.5773 2.7991 44 1 8.0412 -3.3649 3.0539 45 1 5.6168 -3.1067 2.7064 46 1 0.7384 -2.2011 1.2970 47 1 2.1674 -1.5541 2.1437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027513773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:04 Heat of formation + Delta-G solvation = 54.120983 kcal Electronic energy + Delta-G solvation = -29672.921029 eV Core-core repulsion = 25821.500120 eV Total energy + Delta-G solvation = -3851.420909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.28346 -39.77294 -37.55709 -37.06618 -35.11764 -33.61215 -32.43720 -31.33140 -30.82112 -30.48921 -28.63111 -26.03687 -25.71875 -24.45657 -23.95827 -23.54514 -22.70968 -21.66144 -19.80933 -18.82077 -18.51222 -17.34848 -17.11975 -16.78366 -16.45905 -15.71576 -15.22775 -14.99863 -14.70050 -14.44801 -14.29097 -14.15972 -14.02910 -13.64905 -13.53199 -13.30015 -13.12308 -12.67727 -12.53895 -12.41674 -12.27391 -11.93169 -11.88991 -11.60037 -11.16210 -11.03102 -10.82424 -10.73435 -10.64798 -10.43485 -10.37901 -10.22148 -10.08839 -9.87092 -9.77081 -9.48737 -9.02733 -8.62739 -8.47339 -8.35533 -6.77012 -5.74159 -3.23243 0.01977 0.57944 1.63052 2.51872 2.80000 3.14462 3.37553 3.43637 3.45066 3.88324 4.03403 4.26527 4.46516 4.51695 4.56627 4.64808 4.79257 4.87702 4.92273 5.07152 5.11779 5.17406 5.28510 5.41225 5.48353 5.52622 5.57122 5.59007 5.71217 5.75004 5.86136 5.86311 5.95778 6.02074 6.08746 6.12084 6.19653 6.26747 6.34052 6.45996 6.53456 6.61922 6.74399 6.88324 6.93531 7.37202 7.54121 7.66133 7.72174 7.79343 8.22583 8.38718 9.21646 9.83058 10.32134 11.29874 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015345 B = 0.003147 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.235780 B = 8895.422487 C = 9915.106865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.591 5.591 3 C -0.257 4.257 4 H 0.068 0.932 5 C 0.005 3.995 6 N -0.906 5.906 7 Si 0.906 3.094 8 H -0.288 1.288 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.170 3.830 12 H 0.064 0.936 13 C -0.134 4.134 14 C -0.130 4.130 15 C 0.097 3.903 16 N -0.595 5.595 17 C 0.553 3.447 18 O -0.531 6.531 19 C -0.091 4.091 20 C -0.088 4.088 21 C -0.105 4.105 22 C -0.079 4.079 23 C 0.124 3.876 24 N -0.478 5.478 25 C 0.134 3.866 26 C -0.175 4.175 27 C -0.045 4.045 28 C -0.070 4.070 29 C 0.098 3.902 30 H 0.031 0.969 31 H 0.043 0.957 32 H -0.002 1.002 33 H 0.253 0.747 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.161 0.839 44 H 0.140 0.860 45 H 0.147 0.853 46 H 0.064 0.936 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.157 -20.432 -1.750 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.313 5.313 3 C -0.387 4.387 4 H 0.086 0.914 5 C -0.193 4.193 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.216 1.216 10 H -0.205 1.205 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.173 4.173 14 C -0.169 4.169 15 C -0.026 4.026 16 N -0.328 5.328 17 C 0.340 3.660 18 O -0.409 6.409 19 C -0.095 4.095 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.097 4.097 23 C 0.003 3.997 24 N -0.186 5.186 25 C -0.038 4.038 26 C -0.195 4.195 27 C -0.071 4.071 28 C -0.073 4.073 29 C -0.026 4.026 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.017 0.983 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.156 0.844 43 H 0.178 0.822 44 H 0.158 0.842 45 H 0.165 0.835 46 H 0.083 0.917 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.386 -20.753 -1.253 22.419 hybrid contribution -0.127 1.827 0.054 1.832 sum 8.259 -18.926 -1.199 20.684 Atomic orbital electron populations 1.20819 0.82529 0.95438 0.99504 1.43917 1.01874 0.99962 1.85547 1.19217 0.99125 0.85644 1.34713 0.91439 1.25096 0.97565 0.98707 0.97961 1.70048 1.17393 1.27499 1.40154 0.86228 0.79000 0.83940 0.77200 1.21471 1.21647 1.20468 1.20715 0.96444 0.86201 0.90621 0.91752 1.22102 0.99682 0.94955 1.00603 1.21897 1.01033 0.97269 0.96724 1.22019 1.01495 0.94209 0.84828 1.48272 1.48027 1.19329 1.17125 1.18190 0.79177 0.85018 0.83643 1.90826 1.63447 1.57987 1.28604 1.20007 0.93045 0.94637 1.01789 1.21406 1.00475 0.91640 0.97118 1.20817 0.94338 0.97702 0.99604 1.20922 0.93533 0.97486 0.97790 1.18801 0.90116 0.92179 0.98652 1.68054 1.05880 1.32004 1.12632 1.22992 1.00225 0.87955 0.92667 1.21980 0.95728 0.99456 1.02317 1.21734 0.94024 0.98928 0.92448 1.18569 0.92969 0.94691 1.01083 1.22734 0.96784 0.80479 1.02566 0.95102 0.93815 0.98322 0.93672 0.91653 0.92170 0.91820 0.91151 0.89669 0.91180 0.84648 0.84554 0.84411 0.82212 0.84166 0.83530 0.91739 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 7.90 59.85 0.47 4.33 16 2 N -0.59 -14.43 2.82 -173.08 -0.49 -14.91 16 3 C -0.26 -7.00 9.59 -15.06 -0.14 -7.14 16 4 H 0.07 1.81 7.82 -52.49 -0.41 1.40 16 5 C 0.01 0.15 5.19 -17.43 -0.09 0.06 16 6 N -0.91 -26.22 10.55 55.49 0.59 -25.63 16 7 Si 0.91 21.84 29.56 -169.99 -5.03 16.82 16 8 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 C 0.17 3.38 2.75 -67.59 -0.19 3.19 16 12 H 0.06 1.36 7.87 -51.93 -0.41 0.95 16 13 C -0.13 -2.14 5.13 -26.69 -0.14 -2.28 16 14 C -0.13 -1.61 6.08 -26.61 -0.16 -1.78 16 15 C 0.10 1.14 5.50 -3.71 -0.02 1.12 16 16 N -0.60 -9.21 2.97 -173.71 -0.52 -9.73 16 17 C 0.55 9.05 6.51 -12.46 -0.08 8.97 16 18 O -0.53 -10.70 15.14 5.28 0.08 -10.62 16 19 C -0.09 -1.22 4.92 -104.66 -0.52 -1.73 16 20 C -0.09 -0.89 7.41 -39.14 -0.29 -1.18 16 21 C -0.10 -0.87 9.92 -40.04 -0.40 -1.27 16 22 C -0.08 -0.77 9.96 -39.38 -0.39 -1.16 16 23 C 0.12 1.54 6.60 -84.88 -0.56 0.98 16 24 N -0.48 -5.82 10.34 -10.99 -0.11 -5.93 16 25 C 0.13 1.36 11.15 -17.47 -0.19 1.17 16 26 C -0.17 -1.87 10.03 -39.74 -0.40 -2.27 16 27 C -0.05 -0.61 9.29 -39.31 -0.37 -0.98 16 28 C -0.07 -0.96 5.76 -106.53 -0.61 -1.57 16 29 C 0.10 1.85 5.80 -3.48 -0.02 1.83 16 30 H 0.03 0.81 7.33 -51.93 -0.38 0.42 16 31 H 0.04 1.13 7.31 -51.93 -0.38 0.75 16 32 H 0.00 -0.03 6.46 -51.93 -0.34 -0.37 16 33 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.96 6.72 -51.93 -0.35 0.61 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.85 4.73 -51.92 -0.25 0.61 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.14 1.13 7.32 -52.49 -0.38 0.75 16 41 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.14 1.08 8.06 -52.48 -0.42 0.65 16 43 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 44 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 45 H 0.15 2.19 6.48 -52.48 -0.34 1.85 16 46 H 0.06 1.22 7.53 -51.93 -0.39 0.83 16 47 H 0.09 2.07 7.02 -51.93 -0.36 1.70 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -32.79 371.89 -10.47 -43.27 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.51 Total: 0.85 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -4.10 Total: 0.29 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.53 Total: -56.20 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.79 -10.47 -43.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027513773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.389 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds