Wall clock time and date at job start Sat Apr 11 2020 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36933 * 119.99571 * 2 1 4 4 H 1.08000 * 119.99581 * 204.32941 * 3 2 1 5 5 C 1.38806 * 120.00493 * 24.33016 * 3 2 1 6 6 N 1.31622 * 120.00130 * 8.55499 * 5 3 2 7 7 Si 1.86804 * 120.00076 * 188.56011 * 5 3 2 8 8 H 1.48501 * 109.47375 * 89.99769 * 7 5 3 9 9 H 1.48499 * 109.47087 * 210.00002 * 7 5 3 10 10 H 1.48498 * 109.46794 * 329.99498 * 7 5 3 11 11 C 1.46496 * 120.00040 * 179.97438 * 2 1 3 12 12 H 1.08999 * 109.49769 * 180.02562 * 11 2 1 13 13 C 1.53043 * 109.49682 * 60.00057 * 11 2 1 14 14 C 1.53040 * 109.53832 * 178.68562 * 13 11 2 15 15 C 1.53188 * 109.31320 * 61.36238 * 14 13 11 16 16 N 1.46930 * 108.77850 * 305.36527 * 15 14 13 17 17 C 1.34769 * 120.63191 * 233.58301 * 16 15 14 18 18 O 1.21592 * 120.00251 * 183.91976 * 17 16 15 19 19 C 1.47554 * 120.00127 * 3.92662 * 17 16 15 20 20 C 1.38691 * 120.38587 * 306.18615 * 19 17 16 21 21 C 1.38979 * 120.53937 * 180.02562 * 20 19 17 22 22 C 1.36213 * 121.23149 * 359.97177 * 21 20 19 23 23 C 1.40709 * 120.20312 * 0.05706 * 22 21 20 24 24 N 1.33690 * 120.93878 * 179.97438 * 23 22 21 25 25 C 1.31068 * 121.33885 * 180.02562 * 24 23 22 26 26 C 1.39337 * 121.70818 * 359.97438 * 25 24 23 27 27 C 1.36672 * 119.86717 * 0.02562 * 26 25 24 28 28 C 1.40474 * 118.17211 * 359.97438 * 27 26 25 29 29 C 1.46930 * 118.73291 * 53.86429 * 16 15 14 30 30 H 1.09003 * 109.47240 * 275.13432 * 1 2 3 31 31 H 1.08997 * 109.47077 * 35.13459 * 1 2 3 32 32 H 1.09002 * 109.46931 * 155.13322 * 1 2 3 33 33 H 0.96996 * 119.99867 * 180.02562 * 6 5 3 34 34 H 1.08992 * 109.45949 * 58.66534 * 13 11 2 35 35 H 1.09006 * 109.45987 * 298.70489 * 13 11 2 36 36 H 1.09007 * 109.49749 * 301.41535 * 14 13 11 37 37 H 1.09000 * 109.52539 * 181.33616 * 14 13 11 38 38 H 1.09010 * 109.58795 * 185.58048 * 15 14 13 39 39 H 1.08998 * 109.58784 * 65.15886 * 15 14 13 40 40 H 1.08000 * 119.73426 * 0.03976 * 20 19 17 41 41 H 1.07992 * 119.38294 * 180.02562 * 21 20 19 42 42 H 1.08004 * 119.89381 * 180.02562 * 22 21 20 43 43 H 1.08002 * 119.14547 * 179.97438 * 25 24 23 44 44 H 1.07996 * 120.06655 * 179.73925 * 26 25 24 45 45 H 1.08006 * 120.91884 * 179.97438 * 27 26 25 46 46 H 1.08997 * 109.58907 * 65.92669 * 29 16 15 47 47 H 1.09006 * 109.58174 * 186.35429 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1577 1.2275 -0.3853 5 6 1.5481 2.3347 0.4952 6 7 0.3906 2.2558 1.1168 7 14 2.3813 3.9926 0.2795 8 1 1.9357 4.6083 -0.9963 9 1 2.0163 4.8811 1.4120 10 1 3.8543 3.8064 0.2514 11 6 2.1976 -1.2687 0.0006 12 1 3.2693 -1.0700 0.0009 13 6 1.8283 -2.0723 -1.2485 14 6 2.6176 -3.3833 -1.2655 15 6 2.2497 -4.2123 -0.0309 16 7 2.4654 -3.3936 1.1699 17 6 3.2357 -3.8450 2.1794 18 8 3.3491 -3.1899 3.1975 19 6 3.9417 -5.1342 2.0493 20 6 3.2436 -6.2860 1.7185 21 6 3.9052 -7.5020 1.5956 22 6 5.2493 -7.5980 1.7943 23 6 5.9983 -6.4556 2.1320 24 7 7.3180 -6.5331 2.3308 25 6 8.0232 -5.4742 2.6462 26 6 7.4355 -4.2189 2.7892 27 6 6.0901 -4.0717 2.5995 28 6 5.3394 -5.2100 2.2617 29 6 1.8202 -2.0761 1.2519 30 1 -0.3634 0.0920 1.0236 31 1 -0.3633 0.8404 -0.5914 32 1 -0.3633 -0.9324 -0.4322 33 1 -0.0299 3.0586 1.4625 34 1 2.0699 -1.4914 -2.1385 35 1 0.7605 -2.2914 -1.2368 36 1 3.6855 -3.1652 -1.2522 37 1 2.3722 -3.9446 -2.1671 38 1 2.8802 -5.1003 0.0142 39 1 1.2021 -4.5080 -0.0883 40 1 2.1771 -6.2377 1.5550 41 1 3.3432 -8.3872 1.3369 42 1 5.7416 -8.5539 1.6927 43 1 9.0873 -5.5773 2.7991 44 1 8.0412 -3.3649 3.0539 45 1 5.6168 -3.1067 2.7064 46 1 0.7384 -2.2011 1.2970 47 1 2.1674 -1.5541 2.1437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027513773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:03 Heat of formation + Delta-G solvation = 34.337258 kcal Electronic energy + Delta-G solvation = -29673.778916 eV Core-core repulsion = 25821.500120 eV Total energy + Delta-G solvation = -3852.278796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.23581 -40.94635 -38.97374 -37.97047 -36.79757 -34.54701 -33.99271 -32.87134 -31.66840 -31.55666 -30.14398 -28.07244 -26.90214 -25.45646 -25.33113 -24.54594 -23.84256 -23.06450 -21.15027 -20.11575 -19.44917 -18.82776 -18.23196 -18.04202 -17.59614 -17.02278 -16.89181 -16.14172 -15.80114 -15.62273 -15.40377 -15.33061 -15.23636 -15.12480 -14.80830 -14.43145 -14.23696 -14.17419 -13.91144 -13.74936 -13.54474 -13.10390 -12.99894 -12.82085 -12.72179 -12.49621 -12.39009 -12.23871 -12.15876 -12.10865 -11.80336 -11.69572 -11.62279 -11.42332 -11.18588 -10.68162 -10.51503 -9.83455 -9.79381 -9.29736 -8.77811 -7.86050 -5.37332 -0.84241 -0.23275 0.68411 1.42067 1.43562 1.48676 1.52653 1.78532 2.00906 2.47224 3.02245 3.24705 3.27536 3.31132 3.58227 3.69234 3.74471 3.81957 3.93166 3.95901 4.02504 4.09528 4.13720 4.19562 4.32868 4.39454 4.43515 4.56131 4.63993 4.72036 4.74675 4.76228 4.84257 4.91255 4.98548 5.01074 5.05888 5.11588 5.25677 5.26457 5.29542 5.37990 5.41572 5.49040 5.52417 5.60190 5.72146 5.77003 6.29637 6.31579 6.81267 6.97641 7.12402 7.82945 8.25744 9.15782 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015345 B = 0.003147 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.235780 B = 8895.422487 C = 9915.106865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.608 5.608 3 C -0.268 4.268 4 H 0.065 0.935 5 C -0.049 4.049 6 N -0.936 5.936 7 Si 0.969 3.031 8 H -0.281 1.281 9 H -0.294 1.294 10 H -0.272 1.272 11 C 0.168 3.832 12 H 0.041 0.959 13 C -0.122 4.122 14 C -0.122 4.122 15 C 0.094 3.906 16 N -0.593 5.593 17 C 0.552 3.448 18 O -0.585 6.585 19 C -0.123 4.123 20 C -0.068 4.068 21 C -0.092 4.092 22 C -0.074 4.074 23 C 0.104 3.896 24 N -0.488 5.488 25 C 0.133 3.867 26 C -0.165 4.165 27 C -0.082 4.082 28 C -0.087 4.087 29 C 0.114 3.886 30 H 0.000 1.000 31 H 0.017 0.983 32 H 0.037 0.963 33 H 0.249 0.751 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.159 0.841 41 H 0.183 0.817 42 H 0.162 0.838 43 H 0.199 0.801 44 H 0.162 0.838 45 H 0.115 0.885 46 H 0.066 0.934 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.904 -24.327 -3.622 26.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.331 5.331 3 C -0.398 4.398 4 H 0.083 0.917 5 C -0.244 4.244 6 N -0.582 5.582 7 Si 0.797 3.203 8 H -0.207 1.207 9 H -0.221 1.221 10 H -0.197 1.197 11 C 0.060 3.940 12 H 0.059 0.941 13 C -0.161 4.161 14 C -0.161 4.161 15 C -0.027 4.027 16 N -0.325 5.325 17 C 0.341 3.659 18 O -0.466 6.466 19 C -0.127 4.127 20 C -0.087 4.087 21 C -0.111 4.111 22 C -0.093 4.093 23 C -0.017 4.017 24 N -0.196 5.196 25 C -0.040 4.040 26 C -0.185 4.185 27 C -0.108 4.108 28 C -0.089 4.089 29 C -0.010 4.010 30 H 0.019 0.981 31 H 0.035 0.965 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.115 0.885 40 H 0.177 0.823 41 H 0.200 0.800 42 H 0.180 0.820 43 H 0.215 0.785 44 H 0.180 0.820 45 H 0.134 0.866 46 H 0.084 0.916 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.150 -24.706 -3.171 26.536 hybrid contribution -0.281 2.930 0.650 3.014 sum 8.869 -21.776 -2.521 23.648 Atomic orbital electron populations 1.20522 0.82393 0.96155 0.97451 1.44125 1.02231 1.00857 1.85865 1.19517 0.99155 0.87124 1.34012 0.91708 1.25844 0.98366 1.01998 0.98240 1.70220 1.18697 1.27882 1.41426 0.85245 0.78324 0.79790 0.76958 1.20724 1.22088 1.19699 1.20849 0.94700 0.85305 0.93098 0.94072 1.21931 1.00758 0.96096 0.97361 1.21878 0.99779 0.95582 0.98813 1.22372 1.03727 0.94150 0.82445 1.48267 1.47510 1.18203 1.18493 1.18753 0.78496 0.85863 0.82790 1.90785 1.64996 1.59943 1.30864 1.19760 0.93138 0.93925 1.05867 1.21775 1.01463 0.91001 0.94413 1.21255 0.93900 0.98215 0.97747 1.21322 0.94197 0.97415 0.96342 1.19180 0.90573 0.92507 0.99466 1.68124 1.05912 1.32637 1.12908 1.23572 1.01783 0.87046 0.91566 1.22271 0.94762 1.00829 1.00615 1.21654 0.95562 0.98175 0.95388 1.18719 0.93295 0.95246 1.01677 1.22161 0.96709 0.82253 0.99920 0.98126 0.96458 0.94492 0.94209 0.92479 0.91281 0.92774 0.87097 0.87140 0.88486 0.82342 0.80005 0.82035 0.78468 0.82015 0.86648 0.91577 0.93635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.83 7.90 127.77 1.01 9.84 16 2 N -0.61 -30.81 2.82 -701.51 -1.98 -32.79 16 3 C -0.27 -15.15 9.59 84.03 0.81 -14.34 16 4 H 0.07 3.61 7.82 -2.91 -0.02 3.59 16 5 C -0.05 -2.82 5.19 84.86 0.44 -2.38 16 6 N -0.94 -56.47 10.55 21.65 0.23 -56.24 16 7 Si 0.97 46.27 29.56 68.60 2.03 48.30 16 8 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 9 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 C 0.17 6.93 2.75 45.22 0.12 7.05 16 12 H 0.04 1.85 7.87 -2.39 -0.02 1.83 16 13 C -0.12 -3.75 5.13 30.62 0.16 -3.59 16 14 C -0.12 -2.66 6.08 30.67 0.19 -2.47 16 15 C 0.09 1.92 5.50 86.36 0.48 2.39 16 16 N -0.59 -18.47 2.97 -821.77 -2.44 -20.91 16 17 C 0.55 18.82 6.51 86.70 0.56 19.39 16 18 O -0.58 -25.71 15.14 -4.01 -0.06 -25.77 16 19 C -0.12 -3.23 4.92 -19.89 -0.10 -3.33 16 20 C -0.07 -1.14 7.41 22.56 0.17 -0.98 16 21 C -0.09 -1.08 9.92 21.98 0.22 -0.86 16 22 C -0.07 -1.17 9.96 22.40 0.22 -0.95 16 23 C 0.10 2.41 6.60 40.27 0.27 2.67 16 24 N -0.49 -10.96 10.34 -188.69 -1.95 -12.91 16 25 C 0.13 2.48 11.15 85.07 0.95 3.43 16 26 C -0.17 -3.54 10.03 22.17 0.22 -3.32 16 27 C -0.08 -2.35 9.29 22.45 0.21 -2.14 16 28 C -0.09 -2.38 5.76 -21.10 -0.12 -2.50 16 29 C 0.11 4.54 5.80 86.51 0.50 5.04 16 30 H 0.00 0.02 7.33 -2.39 -0.02 0.01 16 31 H 0.02 0.90 7.31 -2.39 -0.02 0.89 16 32 H 0.04 1.50 6.46 -2.39 -0.02 1.48 16 33 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 2.01 6.72 -2.38 -0.02 1.99 16 36 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.11 1.76 4.73 -2.38 -0.01 1.75 16 39 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.16 1.90 7.32 -2.91 -0.02 1.88 16 41 H 0.18 0.56 8.06 -2.91 -0.02 0.53 16 42 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 43 H 0.20 2.01 8.06 -2.91 -0.02 1.99 16 44 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 45 H 0.12 3.95 6.48 -2.91 -0.02 3.93 16 46 H 0.07 2.57 7.53 -2.39 -0.02 2.56 16 47 H 0.04 2.22 7.02 -2.38 -0.02 2.21 16 Total: -1.00 -79.04 371.89 3.11 -75.92 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.98 Total: 11.45 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 6.30 Total: 12.96 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -6.13 Total: -122.86 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.06 Total: -25.77 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -79.04 3.11 -75.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027513773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.259 kcal (2) G-P(sol) polarization free energy of solvation -79.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds