Wall clock time and date at job start Sat Apr 11 2020 05:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36940 * 120.00105 * 2 1 4 4 H 1.08002 * 119.99910 * 204.43189 * 3 2 1 5 5 C 1.38811 * 119.99550 * 24.43162 * 3 2 1 6 6 N 1.31609 * 120.00746 * 7.78479 * 5 3 2 7 7 Si 1.86811 * 119.99561 * 187.78410 * 5 3 2 8 8 H 1.48499 * 109.46983 * 59.99764 * 7 5 3 9 9 H 1.48493 * 109.47082 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46821 * 300.00016 * 7 5 3 11 11 C 1.46498 * 119.99811 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.49884 * 180.02562 * 11 2 1 13 13 C 1.53046 * 109.49836 * 300.16291 * 11 2 1 14 14 C 1.53040 * 109.53906 * 181.31808 * 13 11 2 15 15 C 1.53625 * 109.24047 * 298.50797 * 14 13 11 16 16 N 1.46929 * 108.53999 * 54.85750 * 15 14 13 17 17 C 1.34778 * 120.63053 * 126.36866 * 16 15 14 18 18 O 1.21539 * 119.99873 * 4.26667 * 17 16 15 19 19 C 1.47946 * 120.00373 * 184.26920 * 17 16 15 20 20 N 1.32196 * 120.15778 * 284.74879 * 19 17 16 21 21 C 1.32029 * 122.67819 * 179.97438 * 20 19 17 22 22 C 1.36687 * 122.03109 * 359.73220 * 21 20 19 23 23 C 1.40530 * 118.84914 * 0.51527 * 22 21 20 24 24 C 1.40320 * 122.23111 * 179.79040 * 23 22 21 25 25 C 1.36203 * 119.45598 * 179.72205 * 24 23 22 26 26 C 1.39387 * 120.99981 * 0.02562 * 25 24 23 27 27 C 1.36257 * 121.08133 * 359.95538 * 26 25 24 28 28 C 1.40088 * 119.53994 * 0.04248 * 27 26 25 29 29 C 1.46929 * 118.73995 * 306.09139 * 16 15 14 30 30 H 1.09000 * 109.46872 * 275.08818 * 1 2 3 31 31 H 1.09001 * 109.46722 * 35.08293 * 1 2 3 32 32 H 1.08998 * 109.47318 * 155.08797 * 1 2 3 33 33 H 0.97002 * 120.00853 * 180.02562 * 6 5 3 34 34 H 1.09007 * 109.45491 * 301.33726 * 13 11 2 35 35 H 1.09002 * 109.46105 * 61.29246 * 13 11 2 36 36 H 1.08999 * 109.49568 * 58.58045 * 14 13 11 37 37 H 1.08999 * 109.49710 * 178.65171 * 14 13 11 38 38 H 1.08993 * 109.74218 * 295.12230 * 15 14 13 39 39 H 1.09001 * 109.66282 * 174.54439 * 15 14 13 40 40 H 1.08006 * 118.98401 * 179.97438 * 21 20 19 41 41 H 1.08006 * 120.57810 * 180.29485 * 22 21 20 42 42 H 1.08003 * 120.27182 * 359.69343 * 24 23 22 43 43 H 1.07996 * 119.50032 * 179.97438 * 25 24 23 44 44 H 1.07999 * 119.45903 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.22627 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.58516 * 173.64828 * 29 16 15 47 47 H 1.08998 * 109.58110 * 294.07290 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1573 1.2278 -0.3869 5 6 1.5489 2.3342 0.4972 6 7 0.3852 2.2568 1.1070 7 14 2.3921 3.9895 0.3008 8 1 2.5818 4.2802 -1.1431 9 1 1.5507 5.0493 0.9122 10 1 3.7141 3.9549 0.9766 11 6 2.1975 -1.2687 0.0006 12 1 3.2693 -1.0701 0.0009 13 6 1.8251 -2.0730 1.2483 14 6 2.6144 -3.3840 1.2666 15 6 2.2449 -4.2148 0.0283 16 7 2.4681 -3.3931 -1.1691 17 6 3.2410 -3.8439 -2.1771 18 8 3.6977 -4.9695 -2.1360 19 6 3.5336 -2.9687 -3.3335 20 7 2.6071 -2.7474 -4.2501 21 6 2.8140 -1.9755 -5.3010 22 6 4.0073 -1.3432 -5.5123 23 6 5.0475 -1.5310 -4.5863 24 6 6.3019 -0.9202 -4.7359 25 6 7.2682 -1.1370 -3.8007 26 6 7.0297 -1.9563 -2.6986 27 6 5.8233 -2.5646 -2.5222 28 6 4.8050 -2.3651 -3.4634 29 6 1.8278 -2.0731 -1.2496 30 1 -0.3633 0.0911 1.0236 31 1 -0.3633 0.8410 -0.5907 32 1 -0.3634 -0.9320 -0.4329 33 1 -0.0349 3.0593 1.4542 34 1 2.0646 -1.4925 2.1393 35 1 0.7574 -2.2920 1.2339 36 1 3.6823 -3.1659 1.2560 37 1 2.3666 -3.9453 2.1675 38 1 1.1962 -4.5070 0.0805 39 1 2.8727 -5.1047 -0.0171 40 1 2.0145 -1.8362 -6.0136 41 1 4.1495 -0.7131 -6.3779 42 1 6.4998 -0.2839 -5.5858 43 1 8.2340 -0.6676 -3.9154 44 1 7.8139 -2.1113 -1.9724 45 1 5.6533 -3.1963 -1.6629 46 1 2.1802 -1.5496 -2.1384 47 1 0.7457 -2.1944 -1.2994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027548175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:08 Heat of formation + Delta-G solvation = 51.858878 kcal Electronic energy + Delta-G solvation = -30308.465753 eV Core-core repulsion = 26456.946752 eV Total energy + Delta-G solvation = -3851.519002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.21725 -39.59995 -37.54740 -37.34889 -34.95023 -33.30670 -32.27802 -31.44682 -31.31325 -29.78454 -28.71280 -26.04830 -25.90971 -24.35216 -23.67454 -23.53993 -22.82127 -21.40349 -19.97152 -18.94602 -18.01610 -17.59742 -17.09851 -16.71122 -16.31619 -15.73721 -15.20198 -14.95013 -14.68253 -14.27313 -14.20040 -13.95698 -13.89053 -13.79530 -13.52979 -13.37914 -12.91089 -12.67940 -12.54935 -12.41334 -12.13319 -11.98950 -11.95285 -11.36583 -11.05709 -10.97035 -10.84295 -10.62991 -10.42705 -10.41120 -10.33145 -10.24208 -10.04764 -9.92970 -9.78165 -9.46439 -9.21603 -8.65001 -8.41128 -8.16128 -6.77543 -5.75129 -3.24385 0.13253 0.80325 1.73114 2.51963 2.88321 3.05416 3.35282 3.40766 3.41263 3.93388 4.14122 4.41277 4.46172 4.58658 4.67796 4.77136 4.97901 5.02662 5.11889 5.21681 5.24666 5.25996 5.32706 5.42269 5.54054 5.60029 5.62944 5.64332 5.68620 5.83601 5.89323 5.93059 6.04329 6.10485 6.20808 6.25125 6.28937 6.34547 6.40504 6.44947 6.67159 6.69178 6.74649 6.87481 6.96533 7.37391 7.46915 7.72400 7.77773 7.78244 8.13673 8.37387 9.20640 9.81975 10.31308 11.28910 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009132 B = 0.004822 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.531602 B = 5805.691095 C = 7294.050609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.592 5.592 3 C -0.256 4.256 4 H 0.066 0.934 5 C 0.006 3.994 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.169 3.831 12 H 0.064 0.936 13 C -0.132 4.132 14 C -0.131 4.131 15 C 0.112 3.888 16 N -0.588 5.588 17 C 0.579 3.421 18 O -0.538 6.538 19 C 0.148 3.852 20 N -0.458 5.458 21 C 0.081 3.919 22 C -0.143 4.143 23 C -0.022 4.022 24 C -0.112 4.112 25 C -0.095 4.095 26 C -0.114 4.114 27 C -0.080 4.080 28 C -0.079 4.079 29 C 0.095 3.905 30 H 0.032 0.968 31 H 0.043 0.957 32 H -0.003 1.003 33 H 0.253 0.747 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.160 0.840 41 H 0.142 0.858 42 H 0.134 0.866 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.078 0.922 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.053 -8.963 -9.008 15.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.314 5.314 3 C -0.386 4.386 4 H 0.083 0.917 5 C -0.192 4.192 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.211 1.211 9 H -0.215 1.215 10 H -0.209 1.209 11 C 0.059 3.941 12 H 0.082 0.918 13 C -0.172 4.172 14 C -0.170 4.170 15 C -0.010 4.010 16 N -0.319 5.319 17 C 0.365 3.635 18 O -0.415 6.415 19 C -0.005 4.005 20 N -0.168 5.168 21 C -0.064 4.064 22 C -0.162 4.162 23 C -0.027 4.027 24 C -0.130 4.130 25 C -0.114 4.114 26 C -0.132 4.132 27 C -0.100 4.100 28 C -0.082 4.082 29 C -0.030 4.030 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.016 0.984 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.177 0.823 41 H 0.160 0.840 42 H 0.151 0.849 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.149 0.851 46 H 0.096 0.904 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.280 -9.721 -8.911 15.571 hybrid contribution 1.027 1.598 -0.198 1.910 sum 9.308 -8.123 -9.109 15.348 Atomic orbital electron populations 1.20811 0.82479 0.95294 0.99552 1.43854 1.01837 0.99849 1.85838 1.19140 0.98962 0.85797 1.34683 0.91666 1.25050 0.97454 0.98534 0.98161 1.70031 1.16941 1.27574 1.40644 0.86352 0.78753 0.83762 0.77758 1.21084 1.21541 1.20925 1.20592 0.96396 0.86379 0.90715 0.91771 1.22127 0.99595 0.94724 1.00759 1.22016 1.00978 0.97289 0.96709 1.21783 1.01639 0.94109 0.83436 1.48122 1.47033 1.19232 1.17536 1.17788 0.78345 0.85703 0.81703 1.90780 1.53089 1.18508 1.79107 1.21248 0.89741 0.94898 0.94637 1.67382 1.32750 1.14556 1.02092 1.22208 0.96630 0.93072 0.94479 1.22071 0.93735 1.00682 0.99755 1.18112 0.94963 0.95910 0.93758 1.20960 0.92026 0.99901 1.00082 1.21011 0.99416 0.97167 0.93827 1.20955 0.97256 0.97014 0.98017 1.20993 0.92621 0.98436 0.97961 1.18607 0.94542 0.98636 0.96394 1.22602 0.97855 0.80934 1.01571 0.94996 0.93866 0.98447 0.93653 0.91351 0.92312 0.91795 0.91068 0.91196 0.89246 0.82279 0.84012 0.84862 0.85359 0.85286 0.85095 0.90410 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.89 8.01 59.85 0.48 4.37 16 2 N -0.59 -14.29 2.82 -173.34 -0.49 -14.78 16 3 C -0.26 -6.87 9.59 -15.06 -0.14 -7.02 16 4 H 0.07 1.73 7.82 -52.49 -0.41 1.32 16 5 C 0.01 0.18 5.20 -17.43 -0.09 0.09 16 6 N -0.91 -25.83 10.52 55.49 0.58 -25.24 16 7 Si 0.90 21.53 29.56 -169.99 -5.03 16.51 16 8 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 C 0.17 3.36 2.74 -67.81 -0.19 3.17 16 12 H 0.06 1.34 7.88 -51.93 -0.41 0.93 16 13 C -0.13 -2.31 5.14 -26.69 -0.14 -2.45 16 14 C -0.13 -1.82 6.10 -26.39 -0.16 -1.98 16 15 C 0.11 1.59 6.45 -3.48 -0.02 1.57 16 16 N -0.59 -9.67 2.97 -173.58 -0.51 -10.19 16 17 C 0.58 10.11 6.08 -12.28 -0.07 10.03 16 18 O -0.54 -10.26 16.51 5.33 0.09 -10.17 16 19 C 0.15 2.48 4.75 -82.55 -0.39 2.09 16 20 N -0.46 -7.42 9.78 -9.81 -0.10 -7.52 16 21 C 0.08 1.06 11.06 -18.03 -0.20 0.86 16 22 C -0.14 -1.67 9.88 -39.28 -0.39 -2.06 16 23 C -0.02 -0.30 5.75 -106.82 -0.61 -0.91 16 24 C -0.11 -1.20 9.82 -39.53 -0.39 -1.59 16 25 C -0.09 -0.96 9.95 -39.89 -0.40 -1.36 16 26 C -0.11 -1.29 9.95 -39.87 -0.40 -1.69 16 27 C -0.08 -1.12 9.42 -39.60 -0.37 -1.49 16 28 C -0.08 -1.21 5.76 -106.60 -0.61 -1.83 16 29 C 0.09 1.71 5.69 -3.71 -0.02 1.69 16 30 H 0.03 0.82 7.34 -51.93 -0.38 0.44 16 31 H 0.04 1.12 7.29 -51.93 -0.38 0.74 16 32 H 0.00 -0.06 6.36 -51.93 -0.33 -0.39 16 33 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.03 7.71 -51.93 -0.40 0.63 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.09 1.24 7.03 -51.93 -0.36 0.88 16 40 H 0.16 1.57 8.06 -52.48 -0.42 1.14 16 41 H 0.14 1.16 8.06 -52.48 -0.42 0.73 16 42 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 43 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 44 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.13 1.82 7.22 -52.49 -0.38 1.45 16 46 H 0.08 1.51 5.99 -51.93 -0.31 1.20 16 47 H 0.07 1.32 6.50 -51.93 -0.34 0.98 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -31.96 377.11 -10.53 -42.49 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.64 Total: 1.73 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -4.12 Total: 1.50 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.51 Total: -57.73 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.96 -10.53 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027548175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.348 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds