Wall clock time and date at job start Sat Apr 11 2020 05:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36940 * 120.00105 * 2 1 4 4 H 1.08002 * 119.99910 * 204.43189 * 3 2 1 5 5 C 1.38811 * 119.99550 * 24.43162 * 3 2 1 6 6 N 1.31609 * 120.00746 * 7.78479 * 5 3 2 7 7 Si 1.86811 * 119.99561 * 187.78410 * 5 3 2 8 8 H 1.48499 * 109.46983 * 59.99764 * 7 5 3 9 9 H 1.48493 * 109.47082 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46821 * 300.00016 * 7 5 3 11 11 C 1.46498 * 119.99811 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.49884 * 180.02562 * 11 2 1 13 13 C 1.53046 * 109.49836 * 300.16291 * 11 2 1 14 14 C 1.53040 * 109.53906 * 181.31808 * 13 11 2 15 15 C 1.53625 * 109.24047 * 298.50797 * 14 13 11 16 16 N 1.46929 * 108.53999 * 54.85750 * 15 14 13 17 17 C 1.34778 * 120.63053 * 126.36866 * 16 15 14 18 18 O 1.21539 * 119.99873 * 4.26667 * 17 16 15 19 19 C 1.47946 * 120.00373 * 184.26920 * 17 16 15 20 20 N 1.32196 * 120.15778 * 284.74879 * 19 17 16 21 21 C 1.32029 * 122.67819 * 179.97438 * 20 19 17 22 22 C 1.36687 * 122.03109 * 359.73220 * 21 20 19 23 23 C 1.40530 * 118.84914 * 0.51527 * 22 21 20 24 24 C 1.40320 * 122.23111 * 179.79040 * 23 22 21 25 25 C 1.36203 * 119.45598 * 179.72205 * 24 23 22 26 26 C 1.39387 * 120.99981 * 0.02562 * 25 24 23 27 27 C 1.36257 * 121.08133 * 359.95538 * 26 25 24 28 28 C 1.40088 * 119.53994 * 0.04248 * 27 26 25 29 29 C 1.46929 * 118.73995 * 306.09139 * 16 15 14 30 30 H 1.09000 * 109.46872 * 275.08818 * 1 2 3 31 31 H 1.09001 * 109.46722 * 35.08293 * 1 2 3 32 32 H 1.08998 * 109.47318 * 155.08797 * 1 2 3 33 33 H 0.97002 * 120.00853 * 180.02562 * 6 5 3 34 34 H 1.09007 * 109.45491 * 301.33726 * 13 11 2 35 35 H 1.09002 * 109.46105 * 61.29246 * 13 11 2 36 36 H 1.08999 * 109.49568 * 58.58045 * 14 13 11 37 37 H 1.08999 * 109.49710 * 178.65171 * 14 13 11 38 38 H 1.08993 * 109.74218 * 295.12230 * 15 14 13 39 39 H 1.09001 * 109.66282 * 174.54439 * 15 14 13 40 40 H 1.08006 * 118.98401 * 179.97438 * 21 20 19 41 41 H 1.08006 * 120.57810 * 180.29485 * 22 21 20 42 42 H 1.08003 * 120.27182 * 359.69343 * 24 23 22 43 43 H 1.07996 * 119.50032 * 179.97438 * 25 24 23 44 44 H 1.07999 * 119.45903 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.22627 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.58516 * 173.64828 * 29 16 15 47 47 H 1.08998 * 109.58110 * 294.07290 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1573 1.2278 -0.3869 5 6 1.5489 2.3342 0.4972 6 7 0.3852 2.2568 1.1070 7 14 2.3921 3.9895 0.3008 8 1 2.5818 4.2802 -1.1431 9 1 1.5507 5.0493 0.9122 10 1 3.7141 3.9549 0.9766 11 6 2.1975 -1.2687 0.0006 12 1 3.2693 -1.0701 0.0009 13 6 1.8251 -2.0730 1.2483 14 6 2.6144 -3.3840 1.2666 15 6 2.2449 -4.2148 0.0283 16 7 2.4681 -3.3931 -1.1691 17 6 3.2410 -3.8439 -2.1771 18 8 3.6977 -4.9695 -2.1360 19 6 3.5336 -2.9687 -3.3335 20 7 2.6071 -2.7474 -4.2501 21 6 2.8140 -1.9755 -5.3010 22 6 4.0073 -1.3432 -5.5123 23 6 5.0475 -1.5310 -4.5863 24 6 6.3019 -0.9202 -4.7359 25 6 7.2682 -1.1370 -3.8007 26 6 7.0297 -1.9563 -2.6986 27 6 5.8233 -2.5646 -2.5222 28 6 4.8050 -2.3651 -3.4634 29 6 1.8278 -2.0731 -1.2496 30 1 -0.3633 0.0911 1.0236 31 1 -0.3633 0.8410 -0.5907 32 1 -0.3634 -0.9320 -0.4329 33 1 -0.0349 3.0593 1.4542 34 1 2.0646 -1.4925 2.1393 35 1 0.7574 -2.2920 1.2339 36 1 3.6823 -3.1659 1.2560 37 1 2.3666 -3.9453 2.1675 38 1 1.1962 -4.5070 0.0805 39 1 2.8727 -5.1047 -0.0171 40 1 2.0145 -1.8362 -6.0136 41 1 4.1495 -0.7131 -6.3779 42 1 6.4998 -0.2839 -5.5858 43 1 8.2340 -0.6676 -3.9154 44 1 7.8139 -2.1113 -1.9724 45 1 5.6533 -3.1963 -1.6629 46 1 2.1802 -1.5496 -2.1384 47 1 0.7457 -2.1944 -1.2994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027548175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:06 Heat of formation + Delta-G solvation = 33.953040 kcal Electronic energy + Delta-G solvation = -30309.242209 eV Core-core repulsion = 26456.946752 eV Total energy + Delta-G solvation = -3852.295457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.29002 -40.84906 -39.01088 -38.35212 -36.68405 -34.39562 -33.76989 -33.05019 -32.27264 -30.78625 -30.35870 -28.05743 -27.15765 -25.54752 -25.23999 -24.60821 -23.91361 -22.76570 -21.39742 -20.29542 -19.19068 -18.73762 -18.59108 -18.16959 -17.51903 -17.00030 -16.78410 -16.19673 -15.76862 -15.73076 -15.54123 -15.23489 -15.11480 -14.99496 -14.82926 -14.66632 -14.46899 -14.01026 -13.80876 -13.74605 -13.70134 -13.15652 -12.84479 -12.82260 -12.79963 -12.55799 -12.31851 -12.29502 -12.16761 -11.98340 -11.88823 -11.68407 -11.52300 -11.40700 -11.17198 -10.67182 -10.57378 -10.16126 -9.86783 -9.09785 -8.75420 -7.82479 -5.33803 -0.84702 -0.14546 0.76074 1.23089 1.45186 1.46777 1.53453 1.71755 2.03253 2.48622 2.91307 2.99724 3.30693 3.49778 3.60099 3.67880 3.76594 3.83447 3.87810 3.97059 4.06936 4.07376 4.17639 4.24915 4.31028 4.35352 4.41335 4.50924 4.62705 4.69960 4.74176 4.75295 4.84824 4.88807 4.93032 4.95948 5.05639 5.06411 5.26706 5.37045 5.38119 5.40227 5.41505 5.45215 5.53626 5.62877 5.74578 5.84279 6.09737 6.33135 6.71661 6.84164 7.14890 7.84389 8.28753 9.19519 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009132 B = 0.004822 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.531602 B = 5805.691095 C = 7294.050609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.606 5.606 3 C -0.265 4.265 4 H 0.063 0.937 5 C -0.045 4.045 6 N -0.935 5.935 7 Si 0.965 3.035 8 H -0.279 1.279 9 H -0.292 1.292 10 H -0.276 1.276 11 C 0.169 3.831 12 H 0.049 0.951 13 C -0.123 4.123 14 C -0.118 4.118 15 C 0.109 3.891 16 N -0.587 5.587 17 C 0.581 3.419 18 O -0.562 6.562 19 C 0.109 3.891 20 N -0.480 5.480 21 C 0.056 3.944 22 C -0.123 4.123 23 C -0.047 4.047 24 C -0.106 4.106 25 C -0.098 4.098 26 C -0.103 4.103 27 C -0.117 4.117 28 C -0.097 4.097 29 C 0.116 3.884 30 H 0.008 0.992 31 H 0.015 0.985 32 H 0.026 0.974 33 H 0.249 0.751 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.187 0.813 41 H 0.184 0.816 42 H 0.170 0.830 43 H 0.166 0.834 44 H 0.153 0.847 45 H 0.116 0.884 46 H 0.063 0.937 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.974 -8.419 -10.380 17.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.328 5.328 3 C -0.395 4.395 4 H 0.081 0.919 5 C -0.240 4.240 6 N -0.581 5.581 7 Si 0.793 3.207 8 H -0.205 1.205 9 H -0.218 1.218 10 H -0.202 1.202 11 C 0.061 3.939 12 H 0.068 0.932 13 C -0.163 4.163 14 C -0.156 4.156 15 C -0.012 4.012 16 N -0.318 5.318 17 C 0.368 3.632 18 O -0.441 6.441 19 C -0.043 4.043 20 N -0.191 5.191 21 C -0.089 4.089 22 C -0.142 4.142 23 C -0.053 4.053 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.137 4.137 28 C -0.099 4.099 29 C -0.009 4.009 30 H 0.027 0.973 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.204 0.796 41 H 0.201 0.799 42 H 0.187 0.813 43 H 0.184 0.816 44 H 0.171 0.829 45 H 0.134 0.866 46 H 0.082 0.918 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.220 -9.215 -10.278 17.175 hybrid contribution 0.533 1.425 0.147 1.528 sum 10.753 -7.790 -10.131 16.701 Atomic orbital electron populations 1.20504 0.82572 0.95497 0.97756 1.44011 1.02005 1.00721 1.86103 1.19404 0.98961 0.87095 1.34032 0.91910 1.25756 0.98192 1.01670 0.98390 1.70195 1.18186 1.27942 1.41782 0.85387 0.77846 0.79710 0.77784 1.20477 1.21843 1.20199 1.20679 0.95099 0.85402 0.92705 0.93233 1.21957 1.00169 0.95862 0.98262 1.21930 1.00194 0.95496 0.97997 1.21973 1.02762 0.93969 0.82497 1.48139 1.46770 1.18663 1.18230 1.18008 0.77655 0.85514 0.82064 1.90738 1.53971 1.19572 1.79812 1.21156 0.91018 0.96913 0.95178 1.67295 1.33311 1.15521 1.02967 1.22741 0.98394 0.93358 0.94453 1.22551 0.92432 0.99241 0.99976 1.18546 0.96769 0.96311 0.93646 1.21431 0.90707 0.99124 1.01069 1.21471 1.00942 0.96471 0.92829 1.21358 0.96562 0.95493 0.98675 1.21017 0.93992 1.00446 0.98248 1.18837 0.94234 0.99220 0.97651 1.22164 0.97483 0.81431 0.99792 0.97334 0.96652 0.95548 0.94198 0.93321 0.92212 0.91950 0.87919 0.89665 0.88642 0.79616 0.79896 0.81269 0.81622 0.82894 0.86569 0.91821 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.86 8.01 127.77 1.02 9.88 16 2 N -0.61 -29.87 2.82 -702.33 -1.98 -31.85 16 3 C -0.26 -14.44 9.59 84.03 0.81 -13.63 16 4 H 0.06 3.38 7.82 -2.91 -0.02 3.36 16 5 C -0.04 -2.47 5.20 84.86 0.44 -2.02 16 6 N -0.93 -54.39 10.52 21.65 0.23 -54.16 16 7 Si 0.96 44.45 29.56 68.60 2.03 46.48 16 8 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 9 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 11 C 0.17 6.85 2.74 45.07 0.12 6.98 16 12 H 0.05 2.13 7.88 -2.39 -0.02 2.11 16 13 C -0.12 -4.28 5.14 30.62 0.16 -4.13 16 14 C -0.12 -3.14 6.10 30.82 0.19 -2.95 16 15 C 0.11 3.01 6.45 86.51 0.56 3.56 16 16 N -0.59 -19.60 2.97 -821.36 -2.44 -22.03 16 17 C 0.58 20.97 6.08 86.82 0.53 21.50 16 18 O -0.56 -22.18 16.51 -3.84 -0.06 -22.24 16 19 C 0.11 3.79 4.75 42.43 0.20 3.99 16 20 N -0.48 -15.88 9.78 -184.95 -1.81 -17.69 16 21 C 0.06 1.41 11.06 84.30 0.93 2.35 16 22 C -0.12 -2.61 9.88 22.47 0.22 -2.39 16 23 C -0.05 -1.19 5.75 -21.29 -0.12 -1.31 16 24 C -0.11 -1.92 9.82 22.30 0.22 -1.70 16 25 C -0.10 -1.66 9.95 22.07 0.22 -1.44 16 26 C -0.10 -2.16 9.95 22.08 0.22 -1.94 16 27 C -0.12 -3.31 9.42 22.26 0.21 -3.10 16 28 C -0.10 -3.00 5.76 -21.14 -0.12 -3.12 16 29 C 0.12 4.26 5.69 86.36 0.49 4.76 16 30 H 0.01 0.45 7.34 -2.39 -0.02 0.43 16 31 H 0.01 0.80 7.29 -2.39 -0.02 0.78 16 32 H 0.03 1.11 6.36 -2.39 -0.02 1.09 16 33 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 34 H 0.05 1.88 8.14 -2.38 -0.02 1.87 16 35 H 0.06 2.07 7.71 -2.39 -0.02 2.05 16 36 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.10 2.58 7.03 -2.39 -0.02 2.56 16 40 H 0.19 3.39 8.06 -2.91 -0.02 3.36 16 41 H 0.18 2.21 8.06 -2.91 -0.02 2.18 16 42 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 44 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 45 H 0.12 3.46 7.22 -2.91 -0.02 3.44 16 46 H 0.06 2.55 5.99 -2.39 -0.01 2.53 16 47 H 0.07 2.58 6.50 -2.39 -0.02 2.56 16 Total: -1.00 -72.45 377.11 3.24 -69.20 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.98 Total: 17.00 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 6.30 Total: 15.29 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -6.00 Total: -125.73 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.06 Total: -22.24 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -72.45 3.24 -69.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027548175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.156 kcal (2) G-P(sol) polarization free energy of solvation -72.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds