Wall clock time and date at job start Sat Apr 11 2020 05:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 120.00176 * 2 1 4 4 H 1.08000 * 120.00005 * 164.00236 * 3 2 1 5 5 C 1.38813 * 119.99615 * 343.99664 * 3 2 1 6 6 N 1.31617 * 120.00385 * 333.86872 * 5 3 2 7 7 Si 1.86800 * 119.99708 * 153.87175 * 5 3 2 8 8 H 1.48498 * 109.47238 * 84.99594 * 7 5 3 9 9 H 1.48504 * 109.46992 * 204.99717 * 7 5 3 10 10 H 1.48496 * 109.47126 * 324.99571 * 7 5 3 11 11 C 1.46503 * 119.99958 * 179.72456 * 2 1 3 12 12 H 1.09003 * 109.49910 * 180.34267 * 11 2 1 13 13 C 1.53034 * 109.49902 * 60.27131 * 11 2 1 14 14 C 1.53044 * 109.53885 * 178.68212 * 13 11 2 15 15 C 1.53198 * 109.30758 * 61.36939 * 14 13 11 16 16 N 1.46927 * 108.77637 * 305.36391 * 15 14 13 17 17 C 1.34779 * 120.62560 * 233.61034 * 16 15 14 18 18 O 1.21541 * 119.99323 * 184.83403 * 17 16 15 19 19 C 1.47947 * 120.00425 * 4.83960 * 17 16 15 20 20 N 1.32199 * 120.15348 * 284.62361 * 19 17 16 21 21 C 1.32026 * 122.67993 * 179.70080 * 20 19 17 22 22 C 1.36694 * 122.02677 * 0.59173 * 21 20 19 23 23 C 1.40529 * 118.84628 * 359.70885 * 22 21 20 24 24 C 1.40318 * 122.22556 * 180.02562 * 23 22 21 25 25 C 1.36204 * 119.45727 * 179.97438 * 24 23 22 26 26 C 1.39384 * 121.00148 * 359.97438 * 25 24 23 27 27 C 1.36262 * 121.07966 * 0.04560 * 26 25 24 28 28 C 1.40094 * 119.53581 * 359.95768 * 27 26 25 29 29 C 1.46920 * 118.73799 * 53.60734 * 16 15 14 30 30 H 1.09002 * 109.46920 * 88.76347 * 1 2 3 31 31 H 1.09000 * 109.47337 * 208.76742 * 1 2 3 32 32 H 1.09000 * 109.47059 * 328.76225 * 1 2 3 33 33 H 0.96993 * 120.00403 * 180.02562 * 6 5 3 34 34 H 1.08994 * 109.46235 * 298.70466 * 13 11 2 35 35 H 1.09004 * 109.45657 * 58.67947 * 13 11 2 36 36 H 1.09000 * 109.49985 * 181.31471 * 14 13 11 37 37 H 1.08996 * 109.49810 * 301.42009 * 14 13 11 38 38 H 1.09001 * 109.58510 * 65.15380 * 15 14 13 39 39 H 1.09004 * 109.58099 * 185.57597 * 15 14 13 40 40 H 1.07997 * 118.99204 * 180.30115 * 21 20 19 41 41 H 1.08002 * 120.57436 * 179.74053 * 22 21 20 42 42 H 1.08003 * 120.27153 * 359.95278 * 24 23 22 43 43 H 1.08001 * 119.50086 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.46342 * 180.02562 * 26 25 24 45 45 H 1.07996 * 120.23005 * 179.97438 * 27 26 25 46 46 H 1.08998 * 109.58407 * 186.60112 * 29 16 15 47 47 H 1.09009 * 109.58548 * 66.18132 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1983 1.2040 0.2578 5 6 1.4959 2.3647 -0.3314 6 7 0.4368 2.3329 -1.1122 7 14 2.1195 3.9964 0.3306 8 1 3.1952 4.5111 -0.5543 9 1 1.0020 4.9736 0.3712 10 1 2.6568 3.8017 1.7012 11 6 2.1975 -1.2687 0.0061 12 1 3.2692 -1.0701 0.0113 13 6 1.8334 -2.0748 -1.2427 14 6 2.6228 -3.3859 -1.2539 15 6 2.2497 -4.2124 -0.0192 16 7 2.4604 -3.3913 1.1809 17 6 3.2270 -3.8406 2.1943 18 8 3.3228 -3.1917 3.2175 19 6 3.9519 -5.1234 2.0612 20 7 3.2983 -6.2685 2.1571 21 6 3.8938 -7.4411 2.0406 22 6 5.2386 -7.5527 1.8230 23 6 6.0074 -6.3814 1.7143 24 6 7.3923 -6.4133 1.4907 25 6 8.0823 -5.2430 1.3941 26 6 7.4336 -4.0151 1.5136 27 6 6.0902 -3.9476 1.7314 28 6 5.3472 -5.1306 1.8363 29 6 1.8196 -2.0713 1.2551 30 1 -0.3633 0.0222 -1.0275 31 1 -0.3634 -0.9008 0.4946 32 1 -0.3633 0.8787 0.5329 33 1 -0.0198 3.1566 -1.3441 34 1 0.7657 -2.2939 -1.2350 35 1 2.0789 -1.4957 -2.1330 36 1 2.3805 -3.9488 -2.1553 37 1 3.6906 -3.1677 -1.2366 38 1 1.2023 -4.5082 -0.0804 39 1 2.8800 -5.1003 0.0302 40 1 3.3009 -8.3399 2.1245 41 1 5.7022 -8.5243 1.7355 42 1 7.9068 -7.3582 1.3962 43 1 9.1482 -5.2668 1.2216 44 1 8.0051 -3.1023 1.4325 45 1 5.6017 -2.9887 1.8222 46 1 2.1661 -1.5465 2.1454 47 1 0.7371 -2.1924 1.2979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027548176.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:11 Heat of formation + Delta-G solvation = 53.739745 kcal Electronic energy + Delta-G solvation = -29730.210407 eV Core-core repulsion = 25878.772966 eV Total energy + Delta-G solvation = -3851.437441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.37120 -39.64553 -37.65883 -37.38782 -35.11948 -33.34627 -32.27192 -31.51825 -31.34898 -30.05880 -28.79757 -26.10025 -25.90189 -24.46035 -23.83438 -23.61183 -22.72486 -21.62150 -20.09178 -18.85350 -18.13344 -17.76241 -17.18613 -16.72365 -16.36771 -15.82849 -15.26936 -15.05843 -14.57418 -14.40037 -14.30801 -14.05409 -14.02432 -13.89158 -13.57633 -13.43628 -13.04582 -12.71238 -12.58303 -12.46299 -12.25987 -12.12936 -11.98557 -11.48437 -11.14571 -10.96207 -10.89965 -10.61209 -10.50159 -10.45164 -10.33846 -10.20991 -10.15808 -9.87892 -9.75520 -9.55598 -9.40194 -8.61249 -8.34855 -8.32596 -6.85112 -5.78641 -3.10433 -0.05078 0.61151 1.55612 2.49916 2.74105 2.96973 3.40312 3.48212 3.52756 3.73293 4.04469 4.23863 4.41870 4.49912 4.51966 4.60789 4.83223 4.87063 4.96731 5.04522 5.08331 5.17207 5.29526 5.39696 5.42939 5.47577 5.52178 5.60386 5.67719 5.74700 5.77120 5.84423 5.98676 6.07887 6.14227 6.16310 6.19841 6.25945 6.35163 6.48153 6.52563 6.60970 6.74012 6.89630 6.96761 7.31674 7.47729 7.59308 7.60976 7.82384 8.14205 8.34190 9.19367 9.85986 10.32557 11.28849 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016092 B = 0.003131 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.538332 B = 8941.527008 C = 9739.270499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.590 5.590 3 C -0.260 4.260 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.896 5.896 7 Si 0.893 3.107 8 H -0.288 1.288 9 H -0.290 1.290 10 H -0.280 1.280 11 C 0.170 3.830 12 H 0.066 0.934 13 C -0.133 4.133 14 C -0.132 4.132 15 C 0.113 3.887 16 N -0.587 5.587 17 C 0.573 3.427 18 O -0.525 6.525 19 C 0.151 3.849 20 N -0.461 5.461 21 C 0.079 3.921 22 C -0.147 4.147 23 C -0.024 4.024 24 C -0.116 4.116 25 C -0.092 4.092 26 C -0.115 4.115 27 C -0.079 4.079 28 C -0.083 4.083 29 C 0.096 3.904 30 H 0.024 0.976 31 H 0.003 0.997 32 H 0.047 0.953 33 H 0.253 0.747 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.160 0.840 41 H 0.142 0.858 42 H 0.133 0.867 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.136 0.864 46 H 0.093 0.907 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.452 -21.681 1.672 24.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.312 5.312 3 C -0.389 4.389 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.540 5.540 7 Si 0.722 3.278 8 H -0.215 1.215 9 H -0.216 1.216 10 H -0.206 1.206 11 C 0.061 3.939 12 H 0.084 0.916 13 C -0.172 4.172 14 C -0.171 4.171 15 C -0.010 4.010 16 N -0.320 5.320 17 C 0.358 3.642 18 O -0.400 6.400 19 C -0.002 4.002 20 N -0.171 5.171 21 C -0.066 4.066 22 C -0.166 4.166 23 C -0.029 4.029 24 C -0.134 4.134 25 C -0.112 4.112 26 C -0.133 4.133 27 C -0.099 4.099 28 C -0.085 4.085 29 C -0.027 4.027 30 H 0.042 0.958 31 H 0.022 0.978 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.177 0.823 41 H 0.159 0.841 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.149 0.851 45 H 0.153 0.847 46 H 0.111 0.889 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.438 -21.250 2.313 23.788 hybrid contribution 1.094 0.749 0.034 1.326 sum 11.531 -20.502 2.346 23.639 Atomic orbital electron populations 1.20780 0.82655 0.96533 0.98766 1.43935 1.01772 1.00076 1.85379 1.19164 0.95082 0.83931 1.40726 0.91147 1.24755 0.98425 0.97826 0.98374 1.70185 1.22963 1.26711 1.34154 0.86463 0.77753 0.84056 0.79514 1.21467 1.21592 1.20569 1.20554 0.96464 0.86191 0.90712 0.91610 1.22137 0.99544 0.94583 1.00971 1.21954 1.01026 0.97505 0.96650 1.21740 1.01718 0.93163 0.84407 1.48104 1.47555 1.18991 1.17309 1.17782 0.78847 0.83835 0.83746 1.90838 1.63429 1.57571 1.28201 1.21420 0.90312 0.93161 0.95329 1.67428 1.40437 0.97549 1.11704 1.22236 0.92619 0.95029 0.96741 1.22068 0.95248 0.98387 1.00924 1.18124 0.94387 0.92303 0.98059 1.20953 0.92250 0.99066 1.01140 1.21053 1.00410 0.92291 0.97403 1.21022 0.94547 0.98409 0.99303 1.21117 0.94533 0.97588 0.96631 1.18661 0.93265 0.94389 1.02210 1.22549 0.97285 0.80661 1.02254 0.95821 0.97836 0.93400 0.93736 0.92310 0.91309 0.91175 0.91837 0.90896 0.90891 0.82313 0.84065 0.84879 0.85288 0.85055 0.84659 0.88895 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.76 8.14 59.85 0.49 4.25 16 2 N -0.59 -14.42 2.82 -173.35 -0.49 -14.91 16 3 C -0.26 -7.09 9.59 -15.06 -0.14 -7.23 16 4 H 0.07 1.89 7.85 -52.49 -0.41 1.48 16 5 C 0.01 0.14 4.78 -17.43 -0.08 0.06 16 6 N -0.90 -25.87 11.18 55.49 0.62 -25.25 16 7 Si 0.89 21.79 29.63 -169.99 -5.04 16.75 16 8 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 C 0.17 3.40 2.74 -67.81 -0.19 3.22 16 12 H 0.07 1.37 7.82 -51.93 -0.41 0.96 16 13 C -0.13 -2.29 5.15 -26.69 -0.14 -2.43 16 14 C -0.13 -1.79 6.08 -26.61 -0.16 -1.95 16 15 C 0.11 1.52 6.34 -3.71 -0.02 1.49 16 16 N -0.59 -9.54 2.97 -173.84 -0.52 -10.06 16 17 C 0.57 9.87 6.08 -12.28 -0.07 9.80 16 18 O -0.53 -10.75 16.51 5.33 0.09 -10.66 16 19 C 0.15 2.23 4.75 -82.55 -0.39 1.84 16 20 N -0.46 -6.25 9.77 -9.81 -0.10 -6.35 16 21 C 0.08 0.79 11.06 -18.03 -0.20 0.59 16 22 C -0.15 -1.27 9.88 -39.28 -0.39 -1.66 16 23 C -0.02 -0.25 5.75 -106.83 -0.61 -0.86 16 24 C -0.12 -0.95 9.82 -39.53 -0.39 -1.34 16 25 C -0.09 -0.75 9.95 -39.89 -0.40 -1.14 16 26 C -0.11 -1.13 9.95 -39.87 -0.40 -1.52 16 27 C -0.08 -0.99 9.42 -39.60 -0.37 -1.37 16 28 C -0.08 -1.08 5.76 -106.60 -0.61 -1.70 16 29 C 0.10 1.77 5.77 -3.71 -0.02 1.75 16 30 H 0.02 0.60 7.73 -51.93 -0.40 0.20 16 31 H 0.00 0.07 6.32 -51.93 -0.33 -0.26 16 32 H 0.05 1.25 6.96 -51.93 -0.36 0.89 16 33 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.06 1.02 7.72 -51.93 -0.40 0.62 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.92 5.99 -51.93 -0.31 0.61 16 40 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 44 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 45 H 0.14 1.87 7.22 -52.49 -0.38 1.49 16 46 H 0.09 1.92 7.03 -51.93 -0.37 1.55 16 47 H 0.07 1.27 6.47 -51.92 -0.34 0.93 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -32.66 377.49 -10.49 -43.15 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.64 Total: -0.15 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -4.11 Total: 1.79 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.48 Total: -56.56 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.04 Total: 16.75 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.66 -10.49 -43.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027548176.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.888 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds