Wall clock time and date at job start Sat Apr 11 2020 05:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 120.00176 * 2 1 4 4 H 1.08000 * 120.00005 * 164.00236 * 3 2 1 5 5 C 1.38813 * 119.99615 * 343.99664 * 3 2 1 6 6 N 1.31617 * 120.00385 * 333.86872 * 5 3 2 7 7 Si 1.86800 * 119.99708 * 153.87175 * 5 3 2 8 8 H 1.48498 * 109.47238 * 84.99594 * 7 5 3 9 9 H 1.48504 * 109.46992 * 204.99717 * 7 5 3 10 10 H 1.48496 * 109.47126 * 324.99571 * 7 5 3 11 11 C 1.46503 * 119.99958 * 179.72456 * 2 1 3 12 12 H 1.09003 * 109.49910 * 180.34267 * 11 2 1 13 13 C 1.53034 * 109.49902 * 60.27131 * 11 2 1 14 14 C 1.53044 * 109.53885 * 178.68212 * 13 11 2 15 15 C 1.53198 * 109.30758 * 61.36939 * 14 13 11 16 16 N 1.46927 * 108.77637 * 305.36391 * 15 14 13 17 17 C 1.34779 * 120.62560 * 233.61034 * 16 15 14 18 18 O 1.21541 * 119.99323 * 184.83403 * 17 16 15 19 19 C 1.47947 * 120.00425 * 4.83960 * 17 16 15 20 20 N 1.32199 * 120.15348 * 284.62361 * 19 17 16 21 21 C 1.32026 * 122.67993 * 179.70080 * 20 19 17 22 22 C 1.36694 * 122.02677 * 0.59173 * 21 20 19 23 23 C 1.40529 * 118.84628 * 359.70885 * 22 21 20 24 24 C 1.40318 * 122.22556 * 180.02562 * 23 22 21 25 25 C 1.36204 * 119.45727 * 179.97438 * 24 23 22 26 26 C 1.39384 * 121.00148 * 359.97438 * 25 24 23 27 27 C 1.36262 * 121.07966 * 0.04560 * 26 25 24 28 28 C 1.40094 * 119.53581 * 359.95768 * 27 26 25 29 29 C 1.46920 * 118.73799 * 53.60734 * 16 15 14 30 30 H 1.09002 * 109.46920 * 88.76347 * 1 2 3 31 31 H 1.09000 * 109.47337 * 208.76742 * 1 2 3 32 32 H 1.09000 * 109.47059 * 328.76225 * 1 2 3 33 33 H 0.96993 * 120.00403 * 180.02562 * 6 5 3 34 34 H 1.08994 * 109.46235 * 298.70466 * 13 11 2 35 35 H 1.09004 * 109.45657 * 58.67947 * 13 11 2 36 36 H 1.09000 * 109.49985 * 181.31471 * 14 13 11 37 37 H 1.08996 * 109.49810 * 301.42009 * 14 13 11 38 38 H 1.09001 * 109.58510 * 65.15380 * 15 14 13 39 39 H 1.09004 * 109.58099 * 185.57597 * 15 14 13 40 40 H 1.07997 * 118.99204 * 180.30115 * 21 20 19 41 41 H 1.08002 * 120.57436 * 179.74053 * 22 21 20 42 42 H 1.08003 * 120.27153 * 359.95278 * 24 23 22 43 43 H 1.08001 * 119.50086 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.46342 * 180.02562 * 26 25 24 45 45 H 1.07996 * 120.23005 * 179.97438 * 27 26 25 46 46 H 1.08998 * 109.58407 * 186.60112 * 29 16 15 47 47 H 1.09009 * 109.58548 * 66.18132 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1983 1.2040 0.2578 5 6 1.4959 2.3647 -0.3314 6 7 0.4368 2.3329 -1.1122 7 14 2.1195 3.9964 0.3306 8 1 3.1952 4.5111 -0.5543 9 1 1.0020 4.9736 0.3712 10 1 2.6568 3.8017 1.7012 11 6 2.1975 -1.2687 0.0061 12 1 3.2692 -1.0701 0.0113 13 6 1.8334 -2.0748 -1.2427 14 6 2.6228 -3.3859 -1.2539 15 6 2.2497 -4.2124 -0.0192 16 7 2.4604 -3.3913 1.1809 17 6 3.2270 -3.8406 2.1943 18 8 3.3228 -3.1917 3.2175 19 6 3.9519 -5.1234 2.0612 20 7 3.2983 -6.2685 2.1571 21 6 3.8938 -7.4411 2.0406 22 6 5.2386 -7.5527 1.8230 23 6 6.0074 -6.3814 1.7143 24 6 7.3923 -6.4133 1.4907 25 6 8.0823 -5.2430 1.3941 26 6 7.4336 -4.0151 1.5136 27 6 6.0902 -3.9476 1.7314 28 6 5.3472 -5.1306 1.8363 29 6 1.8196 -2.0713 1.2551 30 1 -0.3633 0.0222 -1.0275 31 1 -0.3634 -0.9008 0.4946 32 1 -0.3633 0.8787 0.5329 33 1 -0.0198 3.1566 -1.3441 34 1 0.7657 -2.2939 -1.2350 35 1 2.0789 -1.4957 -2.1330 36 1 2.3805 -3.9488 -2.1553 37 1 3.6906 -3.1677 -1.2366 38 1 1.2023 -4.5082 -0.0804 39 1 2.8800 -5.1003 0.0302 40 1 3.3009 -8.3399 2.1245 41 1 5.7022 -8.5243 1.7355 42 1 7.9068 -7.3582 1.3962 43 1 9.1482 -5.2668 1.2216 44 1 8.0051 -3.1023 1.4325 45 1 5.6017 -2.9887 1.8222 46 1 2.1661 -1.5465 2.1454 47 1 0.7371 -2.1924 1.2979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027548176.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:10 Heat of formation + Delta-G solvation = 34.479371 kcal Electronic energy + Delta-G solvation = -29731.045599 eV Core-core repulsion = 25878.772966 eV Total energy + Delta-G solvation = -3852.272634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.30021 -40.87075 -38.99440 -38.35221 -36.85152 -34.35164 -33.75914 -32.98411 -32.28362 -31.03115 -30.31238 -28.07481 -27.16815 -25.66169 -25.12838 -24.58819 -23.69252 -23.09466 -21.37793 -20.26055 -19.16859 -18.75341 -18.60444 -18.17200 -17.51189 -16.99801 -16.74559 -16.19538 -15.84221 -15.70255 -15.45749 -15.39389 -15.19949 -14.93856 -14.82138 -14.64160 -14.52190 -14.00751 -13.87206 -13.82974 -13.66756 -13.20146 -13.05449 -12.79338 -12.78182 -12.52543 -12.37214 -12.26997 -12.19476 -11.99704 -11.87240 -11.76308 -11.46434 -11.44032 -11.16968 -10.62228 -10.55543 -10.17130 -9.87140 -9.08994 -8.87328 -7.91442 -5.24846 -0.85684 -0.14716 0.75637 1.25268 1.42664 1.46723 1.56034 1.68831 2.02337 2.49963 2.90187 3.04478 3.21580 3.50112 3.53569 3.66351 3.75213 3.85276 3.90470 3.96102 4.00062 4.06848 4.14883 4.25757 4.28039 4.36888 4.43952 4.50113 4.60719 4.70393 4.71896 4.77360 4.77718 4.85645 4.92982 4.95428 5.04523 5.08360 5.21088 5.31682 5.38047 5.40399 5.42042 5.43581 5.55533 5.58809 5.65925 5.84003 6.17377 6.25722 6.73489 6.85779 7.09523 7.82991 8.25085 9.14373 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016092 B = 0.003131 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.538332 B = 8941.527008 C = 9739.270499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.606 5.606 3 C -0.271 4.271 4 H 0.065 0.935 5 C -0.043 4.043 6 N -0.924 5.924 7 Si 0.954 3.046 8 H -0.281 1.281 9 H -0.290 1.290 10 H -0.280 1.280 11 C 0.171 3.829 12 H 0.049 0.951 13 C -0.121 4.121 14 C -0.120 4.120 15 C 0.115 3.885 16 N -0.587 5.587 17 C 0.573 3.427 18 O -0.574 6.574 19 C 0.114 3.886 20 N -0.476 5.476 21 C 0.059 3.941 22 C -0.114 4.114 23 C -0.043 4.043 24 C -0.098 4.098 25 C -0.098 4.098 26 C -0.103 4.103 27 C -0.122 4.122 28 C -0.093 4.093 29 C 0.111 3.889 30 H 0.005 0.995 31 H 0.034 0.966 32 H 0.019 0.981 33 H 0.250 0.750 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.193 0.807 41 H 0.190 0.810 42 H 0.176 0.824 43 H 0.165 0.835 44 H 0.144 0.856 45 H 0.102 0.898 46 H 0.063 0.937 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.861 -25.742 0.982 29.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.328 5.328 3 C -0.401 4.401 4 H 0.083 0.917 5 C -0.239 4.239 6 N -0.570 5.570 7 Si 0.782 3.218 8 H -0.208 1.208 9 H -0.216 1.216 10 H -0.205 1.205 11 C 0.063 3.937 12 H 0.067 0.933 13 C -0.161 4.161 14 C -0.158 4.158 15 C -0.007 4.007 16 N -0.318 5.318 17 C 0.359 3.641 18 O -0.453 6.453 19 C -0.037 4.037 20 N -0.187 5.187 21 C -0.086 4.086 22 C -0.133 4.133 23 C -0.049 4.049 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.142 4.142 28 C -0.096 4.096 29 C -0.013 4.013 30 H 0.023 0.977 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.210 0.790 41 H 0.207 0.793 42 H 0.194 0.806 43 H 0.183 0.817 44 H 0.162 0.838 45 H 0.120 0.880 46 H 0.081 0.919 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.863 -25.346 1.602 28.468 hybrid contribution 0.488 1.852 0.266 1.934 sum 13.351 -23.494 1.869 27.087 Atomic orbital electron populations 1.20532 0.82510 0.96639 0.97456 1.44114 1.02121 1.00930 1.85650 1.19422 0.95191 0.85434 1.40057 0.91688 1.25433 0.99074 1.00629 0.98788 1.70293 1.24230 1.27156 1.35311 0.85497 0.77196 0.80328 0.78732 1.20772 1.21621 1.20522 1.20650 0.95055 0.85262 0.92772 0.93314 1.21936 1.00280 0.95811 0.98063 1.21877 1.00122 0.95622 0.98210 1.21911 1.02897 0.93088 0.82780 1.48138 1.47192 1.18154 1.18353 1.18323 0.78105 0.84728 0.82896 1.90780 1.64932 1.59442 1.30121 1.20864 0.90913 0.92135 0.99821 1.67319 1.41588 0.98252 1.11532 1.22834 0.94001 0.94591 0.97212 1.22593 0.94466 0.99585 0.96637 1.18520 0.95848 0.91735 0.98780 1.21461 0.91039 1.00858 0.98220 1.21445 1.02159 0.91242 0.96857 1.21323 0.93442 1.00347 0.96994 1.20970 0.96004 0.96535 1.00733 1.18770 0.92628 0.95767 1.02417 1.22090 0.97332 0.81867 1.00029 0.97708 0.94777 0.96177 0.94058 0.92018 0.93260 0.87772 0.92118 0.89492 0.89360 0.79044 0.79331 0.80649 0.81699 0.83827 0.87994 0.91863 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.61 8.14 127.77 1.04 9.65 16 2 N -0.61 -30.95 2.82 -702.34 -1.98 -32.93 16 3 C -0.27 -15.41 9.59 84.03 0.81 -14.60 16 4 H 0.07 3.67 7.85 -2.91 -0.02 3.65 16 5 C -0.04 -2.46 4.78 84.86 0.41 -2.05 16 6 N -0.92 -55.06 11.18 21.65 0.24 -54.82 16 7 Si 0.95 46.17 29.63 68.60 2.03 48.21 16 8 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 9 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 11 C 0.17 7.16 2.74 45.07 0.12 7.29 16 12 H 0.05 2.18 7.82 -2.39 -0.02 2.16 16 13 C -0.12 -4.24 5.15 30.62 0.16 -4.08 16 14 C -0.12 -3.11 6.08 30.68 0.19 -2.92 16 15 C 0.11 3.00 6.34 86.36 0.55 3.55 16 16 N -0.59 -19.89 2.97 -822.17 -2.44 -22.33 16 17 C 0.57 21.02 6.08 86.82 0.53 21.55 16 18 O -0.57 -25.67 16.51 -3.85 -0.06 -25.74 16 19 C 0.11 3.43 4.75 42.43 0.20 3.63 16 20 N -0.48 -12.44 9.77 -184.96 -1.81 -14.24 16 21 C 0.06 0.99 11.06 84.30 0.93 1.92 16 22 C -0.11 -1.43 9.88 22.47 0.22 -1.21 16 23 C -0.04 -0.78 5.75 -21.29 -0.12 -0.90 16 24 C -0.10 -1.14 9.82 22.30 0.22 -0.92 16 25 C -0.10 -1.22 9.95 22.07 0.22 -1.00 16 26 C -0.10 -1.93 9.95 22.09 0.22 -1.71 16 27 C -0.12 -3.24 9.42 22.26 0.21 -3.03 16 28 C -0.09 -2.43 5.76 -21.14 -0.12 -2.55 16 29 C 0.11 4.35 5.77 86.36 0.50 4.85 16 30 H 0.00 0.25 7.73 -2.39 -0.02 0.23 16 31 H 0.03 1.44 6.32 -2.39 -0.02 1.43 16 32 H 0.02 1.07 6.96 -2.39 -0.02 1.06 16 33 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 34 H 0.06 2.12 7.72 -2.39 -0.02 2.10 16 35 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.10 2.08 8.14 -2.39 -0.02 2.07 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.09 2.11 5.99 -2.39 -0.01 2.10 16 40 H 0.19 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.19 0.56 8.06 -2.91 -0.02 0.53 16 42 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 43 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 44 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 45 H 0.10 3.25 7.22 -2.91 -0.02 3.23 16 46 H 0.06 2.85 7.03 -2.39 -0.02 2.83 16 47 H 0.07 2.75 6.47 -2.38 -0.02 2.74 16 Total: -1.00 -77.45 377.49 3.23 -74.22 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.98 Total: 10.17 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 6.27 Total: 17.46 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -5.99 Total: -124.32 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.06 Total: -25.74 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.21 kcal Total: -77.45 3.23 -74.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027548176.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.703 kcal (2) G-P(sol) polarization free energy of solvation -77.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds