Wall clock time and date at job start Sat Apr 11 2020 05:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36928 * 119.99692 * 2 1 4 4 H 1.08007 * 119.99846 * 164.12898 * 3 2 1 5 5 C 1.38807 * 120.00698 * 344.13386 * 3 2 1 6 6 N 1.31621 * 119.99770 * 343.14788 * 5 3 2 7 7 Si 1.86796 * 120.00593 * 163.15098 * 5 3 2 8 8 H 1.48507 * 109.47348 * 89.99718 * 7 5 3 9 9 H 1.48496 * 109.47515 * 210.00073 * 7 5 3 10 10 H 1.48499 * 109.47114 * 329.99963 * 7 5 3 11 11 C 1.46492 * 119.99767 * 179.72782 * 2 1 3 12 12 H 1.09004 * 109.50074 * 180.21098 * 11 2 1 13 13 C 1.53043 * 109.49796 * 300.27466 * 11 2 1 14 14 C 1.53044 * 109.53934 * 181.31981 * 13 11 2 15 15 C 1.53198 * 109.31407 * 298.63555 * 14 13 11 16 16 N 1.46931 * 108.77156 * 54.63257 * 15 14 13 17 17 C 1.34774 * 120.62557 * 126.39402 * 16 15 14 18 18 O 1.21567 * 120.00566 * 354.54111 * 17 16 15 19 19 C 1.47768 * 119.99686 * 174.53508 * 17 16 15 20 20 C 1.40633 * 119.80081 * 146.27207 * 19 17 16 21 21 C 1.35700 * 120.91986 * 179.72618 * 20 19 17 22 22 C 1.40760 * 120.11008 * 0.57677 * 21 20 19 23 23 N 1.33648 * 120.83223 * 179.66823 * 22 21 20 24 24 C 1.31119 * 121.39742 * 180.02562 * 23 22 21 25 25 C 1.39310 * 121.76759 * 359.97438 * 24 23 22 26 26 C 1.36579 * 119.90809 * 359.97438 * 25 24 23 27 27 C 1.40893 * 118.15392 * 0.04015 * 26 25 24 28 28 C 1.38547 * 119.80556 * 326.54796 * 19 17 16 29 29 C 1.46923 * 118.74194 * 306.39342 * 16 15 14 30 30 H 1.09002 * 109.47176 * 84.62256 * 1 2 3 31 31 H 1.09002 * 109.47184 * 204.61658 * 1 2 3 32 32 H 1.08995 * 109.47113 * 324.62421 * 1 2 3 33 33 H 0.96994 * 120.00152 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.46012 * 301.33625 * 13 11 2 35 35 H 1.08999 * 109.46155 * 61.29905 * 13 11 2 36 36 H 1.09004 * 109.49861 * 58.58537 * 14 13 11 37 37 H 1.08995 * 109.49940 * 178.68630 * 14 13 11 38 38 H 1.08991 * 109.58791 * 174.42411 * 15 14 13 39 39 H 1.09005 * 109.58272 * 294.85047 * 15 14 13 40 40 H 1.07994 * 119.54167 * 0.02562 * 20 19 17 41 41 H 1.07997 * 119.94655 * 180.26385 * 21 20 19 42 42 H 1.08005 * 119.11644 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.04647 * 180.02562 * 25 24 23 44 44 H 1.07994 * 120.92131 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.30209 * 359.95819 * 28 19 17 46 46 H 1.09003 * 109.58232 * 293.82276 * 29 16 15 47 47 H 1.08999 * 109.58891 * 173.40176 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1988 1.2037 0.2558 5 6 1.4953 2.3651 -0.3286 6 7 0.3366 2.3232 -0.9514 7 14 2.2592 4.0116 0.1129 8 1 3.1238 4.4715 -1.0035 9 1 1.1844 5.0085 0.3497 10 1 3.0770 3.8637 1.3436 11 6 2.1974 -1.2687 0.0060 12 1 3.2692 -1.0701 0.0089 13 6 1.8229 -2.0688 1.2558 14 6 2.6122 -3.3798 1.2798 15 6 2.2495 -4.2123 0.0460 16 7 2.4702 -3.3969 -1.1562 17 6 3.2452 -3.8509 -2.1610 18 8 3.8489 -4.8989 -2.0373 19 6 3.3611 -3.0750 -3.4132 20 6 4.5736 -3.0749 -4.1257 21 6 4.7034 -2.3749 -5.2809 22 6 3.6209 -1.6246 -5.7774 23 7 3.7350 -0.9245 -6.9102 24 6 2.7340 -0.2215 -7.3824 25 6 1.5037 -0.1679 -6.7312 26 6 1.3176 -0.8605 -5.5688 27 6 2.3957 -1.6145 -5.0644 28 6 2.2765 -2.3472 -3.8752 29 6 1.8301 -2.0773 -1.2422 30 1 -0.3633 0.0963 -1.0232 31 1 -0.3634 -0.9343 0.4281 32 1 -0.3633 0.8379 0.5949 33 1 -0.1209 3.1472 -1.1808 34 1 2.0609 -1.4854 2.1452 35 1 0.7553 -2.2879 1.2402 36 1 3.6802 -3.1617 1.2704 37 1 2.3624 -3.9383 2.1818 38 1 2.8801 -5.1003 0.0061 39 1 1.2016 -4.5078 0.0998 40 1 5.4115 -3.6438 -3.7509 41 1 5.6405 -2.3893 -5.8176 42 1 2.8666 0.3302 -8.3014 43 1 0.6978 0.4199 -7.1453 44 1 0.3709 -0.8302 -5.0502 45 1 1.3473 -2.3452 -3.3248 46 1 0.7480 -2.1987 -1.2934 47 1 2.1839 -1.5567 -2.1320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027554241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:15 Heat of formation + Delta-G solvation = 61.672821 kcal Electronic energy + Delta-G solvation = -30053.870945 eV Core-core repulsion = 26202.777508 eV Total energy + Delta-G solvation = -3851.093437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.03146 -39.90067 -37.65058 -36.66848 -35.02694 -33.66664 -32.59778 -31.60016 -30.59836 -29.97130 -28.69102 -26.12752 -25.82596 -24.29707 -23.90315 -23.45821 -22.17445 -21.64131 -20.13102 -19.03923 -18.22157 -17.35091 -16.92936 -16.69826 -16.19418 -15.50248 -15.27197 -14.84655 -14.65961 -14.28174 -14.22347 -14.11822 -13.87196 -13.66720 -13.42984 -13.20150 -13.07505 -12.71401 -12.70004 -12.34069 -12.15764 -11.92778 -11.60815 -11.47459 -11.18650 -11.07395 -10.85169 -10.63620 -10.56697 -10.48438 -10.39859 -10.29561 -9.90983 -9.85716 -9.73077 -9.48857 -8.81862 -8.66202 -8.40915 -8.19700 -6.92698 -5.82262 -3.21419 0.24159 0.71355 1.91826 2.49150 3.03975 3.32838 3.33390 3.40627 3.42795 4.10319 4.22715 4.39245 4.51522 4.58074 4.69795 4.88897 5.00280 5.02730 5.14004 5.20128 5.22769 5.27125 5.35405 5.40479 5.47952 5.59844 5.64042 5.72999 5.82623 5.87541 5.90043 5.99359 6.00922 6.03509 6.11580 6.24156 6.25547 6.31292 6.32645 6.47364 6.61787 6.70146 6.74516 6.76605 6.86288 7.31922 7.53889 7.58678 7.74166 7.85786 8.24586 8.28671 9.14017 9.77565 10.23066 11.23088 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007766 B = 0.005286 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3604.703475 B = 5295.334909 C = 7903.056286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.254 4.254 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.901 3.099 8 H -0.288 1.288 9 H -0.289 1.289 10 H -0.280 1.280 11 C 0.169 3.831 12 H 0.066 0.934 13 C -0.134 4.134 14 C -0.130 4.130 15 C 0.113 3.887 16 N -0.599 5.599 17 C 0.560 3.440 18 O -0.548 6.548 19 C -0.129 4.129 20 C -0.053 4.053 21 C -0.104 4.104 22 C 0.144 3.856 23 N -0.483 5.483 24 C 0.140 3.860 25 C -0.183 4.183 26 C -0.037 4.037 27 C -0.111 4.111 28 C -0.047 4.047 29 C 0.073 3.927 30 H 0.026 0.974 31 H -0.001 1.001 32 H 0.048 0.952 33 H 0.252 0.748 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.159 0.841 43 H 0.139 0.861 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.067 0.933 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.683 -9.449 -6.797 11.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.314 5.314 3 C -0.383 4.383 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.552 5.552 7 Si 0.731 3.269 8 H -0.215 1.215 9 H -0.215 1.215 10 H -0.206 1.206 11 C 0.059 3.941 12 H 0.084 0.916 13 C -0.173 4.173 14 C -0.169 4.169 15 C -0.009 4.009 16 N -0.331 5.331 17 C 0.349 3.651 18 O -0.427 6.427 19 C -0.132 4.132 20 C -0.073 4.073 21 C -0.122 4.122 22 C 0.022 3.978 23 N -0.191 5.191 24 C -0.033 4.033 25 C -0.203 4.203 26 C -0.063 4.063 27 C -0.113 4.113 28 C -0.067 4.067 29 C -0.051 4.051 30 H 0.044 0.956 31 H 0.018 0.982 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.155 0.845 41 H 0.157 0.843 42 H 0.176 0.824 43 H 0.157 0.843 44 H 0.161 0.839 45 H 0.164 0.836 46 H 0.085 0.915 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.718 -9.912 -7.127 12.329 hybrid contribution -0.663 1.286 0.651 1.587 sum 1.055 -8.626 -6.476 10.838 Atomic orbital electron populations 1.20823 0.82346 0.95769 0.99354 1.43974 1.01939 0.99964 1.85535 1.19229 0.94743 0.84126 1.40190 0.91219 1.24831 0.97518 0.98000 0.99188 1.70101 1.16875 1.26251 1.41971 0.86318 0.78198 0.84012 0.78418 1.21509 1.21531 1.20575 1.20609 0.96556 0.86080 0.90841 0.91593 1.22101 0.99680 0.95110 1.00448 1.21901 1.01060 0.97040 0.96913 1.21612 1.01146 0.94381 0.83748 1.48164 1.48445 1.18921 1.17591 1.18269 0.78693 0.84962 0.83171 1.90734 1.46125 1.24155 1.81709 1.19870 0.95597 1.00885 0.96799 1.20784 0.96507 0.96650 0.93382 1.20635 0.98164 0.97162 0.96287 1.18977 0.92530 0.95144 0.91121 1.68048 1.31548 1.07649 1.11840 1.22998 0.88406 0.93474 0.98394 1.21878 0.99471 1.01744 0.97170 1.21613 0.98170 0.92121 0.94359 1.18764 0.95305 1.00518 0.96670 1.21839 0.99197 0.92149 0.93469 1.23270 0.97303 0.81393 1.03126 0.95562 0.98214 0.93282 0.93773 0.91595 0.92219 0.91726 0.91194 0.89297 0.91618 0.84481 0.84308 0.82411 0.84318 0.83855 0.83601 0.91478 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.62 7.92 59.85 0.47 4.10 16 2 N -0.59 -13.59 2.82 -173.35 -0.49 -14.08 16 3 C -0.25 -6.60 9.67 -15.07 -0.15 -6.75 16 4 H 0.07 1.81 7.78 -52.48 -0.41 1.40 16 5 C 0.00 0.07 5.05 -17.43 -0.09 -0.02 16 6 N -0.91 -24.82 10.52 55.49 0.58 -24.24 16 7 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 8 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 C 0.17 3.18 2.74 -67.81 -0.19 2.99 16 12 H 0.07 1.34 7.82 -51.93 -0.41 0.93 16 13 C -0.13 -2.13 5.13 -26.69 -0.14 -2.27 16 14 C -0.13 -1.73 6.08 -26.61 -0.16 -1.89 16 15 C 0.11 1.53 6.44 -3.70 -0.02 1.51 16 16 N -0.60 -9.25 2.97 -173.90 -0.52 -9.77 16 17 C 0.56 9.24 7.39 -12.37 -0.09 9.15 16 18 O -0.55 -10.15 16.19 5.31 0.09 -10.06 16 19 C -0.13 -1.98 5.37 -104.98 -0.56 -2.54 16 20 C -0.05 -0.75 9.49 -39.59 -0.38 -1.13 16 21 C -0.10 -1.44 9.95 -39.54 -0.39 -1.83 16 22 C 0.14 2.17 6.61 -84.78 -0.56 1.61 16 23 N -0.48 -6.97 10.33 -10.92 -0.11 -7.09 16 24 C 0.14 1.64 11.15 -17.46 -0.19 1.45 16 25 C -0.18 -2.06 10.03 -39.78 -0.40 -2.46 16 26 C -0.04 -0.48 9.89 -39.18 -0.39 -0.86 16 27 C -0.11 -1.64 5.74 -106.81 -0.61 -2.25 16 28 C -0.05 -0.70 7.10 -38.74 -0.27 -0.97 16 29 C 0.07 1.21 4.09 -3.71 -0.02 1.20 16 30 H 0.03 0.63 7.50 -51.93 -0.39 0.24 16 31 H 0.00 -0.01 6.45 -51.93 -0.33 -0.35 16 32 H 0.05 1.22 6.97 -51.93 -0.36 0.86 16 33 H 0.25 6.76 8.31 -40.82 -0.34 6.43 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.94 6.71 -51.93 -0.35 0.59 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.22 7.00 -51.93 -0.36 0.86 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.14 1.78 7.96 -52.49 -0.42 1.36 16 41 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 43 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 45 H 0.15 2.04 5.78 -52.49 -0.30 1.73 16 46 H 0.07 1.09 7.41 -51.93 -0.38 0.71 16 47 H 0.10 1.74 4.32 -51.93 -0.22 1.51 16 LS Contribution 372.36 15.07 5.61 5.61 Total: -1.00 -30.77 372.36 -10.46 -41.23 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.46 Total: 3.13 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -4.14 Total: -0.97 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.54 Total: -55.17 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.77 -10.46 -41.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027554241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.907 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds