Wall clock time and date at job start Sat Apr 11 2020 05:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36928 * 119.99692 * 2 1 4 4 H 1.08007 * 119.99846 * 164.12898 * 3 2 1 5 5 C 1.38807 * 120.00698 * 344.13386 * 3 2 1 6 6 N 1.31621 * 119.99770 * 343.14788 * 5 3 2 7 7 Si 1.86796 * 120.00593 * 163.15098 * 5 3 2 8 8 H 1.48507 * 109.47348 * 89.99718 * 7 5 3 9 9 H 1.48496 * 109.47515 * 210.00073 * 7 5 3 10 10 H 1.48499 * 109.47114 * 329.99963 * 7 5 3 11 11 C 1.46492 * 119.99767 * 179.72782 * 2 1 3 12 12 H 1.09004 * 109.50074 * 180.21098 * 11 2 1 13 13 C 1.53043 * 109.49796 * 300.27466 * 11 2 1 14 14 C 1.53044 * 109.53934 * 181.31981 * 13 11 2 15 15 C 1.53198 * 109.31407 * 298.63555 * 14 13 11 16 16 N 1.46931 * 108.77156 * 54.63257 * 15 14 13 17 17 C 1.34774 * 120.62557 * 126.39402 * 16 15 14 18 18 O 1.21567 * 120.00566 * 354.54111 * 17 16 15 19 19 C 1.47768 * 119.99686 * 174.53508 * 17 16 15 20 20 C 1.40633 * 119.80081 * 146.27207 * 19 17 16 21 21 C 1.35700 * 120.91986 * 179.72618 * 20 19 17 22 22 C 1.40760 * 120.11008 * 0.57677 * 21 20 19 23 23 N 1.33648 * 120.83223 * 179.66823 * 22 21 20 24 24 C 1.31119 * 121.39742 * 180.02562 * 23 22 21 25 25 C 1.39310 * 121.76759 * 359.97438 * 24 23 22 26 26 C 1.36579 * 119.90809 * 359.97438 * 25 24 23 27 27 C 1.40893 * 118.15392 * 0.04015 * 26 25 24 28 28 C 1.38547 * 119.80556 * 326.54796 * 19 17 16 29 29 C 1.46923 * 118.74194 * 306.39342 * 16 15 14 30 30 H 1.09002 * 109.47176 * 84.62256 * 1 2 3 31 31 H 1.09002 * 109.47184 * 204.61658 * 1 2 3 32 32 H 1.08995 * 109.47113 * 324.62421 * 1 2 3 33 33 H 0.96994 * 120.00152 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.46012 * 301.33625 * 13 11 2 35 35 H 1.08999 * 109.46155 * 61.29905 * 13 11 2 36 36 H 1.09004 * 109.49861 * 58.58537 * 14 13 11 37 37 H 1.08995 * 109.49940 * 178.68630 * 14 13 11 38 38 H 1.08991 * 109.58791 * 174.42411 * 15 14 13 39 39 H 1.09005 * 109.58272 * 294.85047 * 15 14 13 40 40 H 1.07994 * 119.54167 * 0.02562 * 20 19 17 41 41 H 1.07997 * 119.94655 * 180.26385 * 21 20 19 42 42 H 1.08005 * 119.11644 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.04647 * 180.02562 * 25 24 23 44 44 H 1.07994 * 120.92131 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.30209 * 359.95819 * 28 19 17 46 46 H 1.09003 * 109.58232 * 293.82276 * 29 16 15 47 47 H 1.08999 * 109.58891 * 173.40176 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1988 1.2037 0.2558 5 6 1.4953 2.3651 -0.3286 6 7 0.3366 2.3232 -0.9514 7 14 2.2592 4.0116 0.1129 8 1 3.1238 4.4715 -1.0035 9 1 1.1844 5.0085 0.3497 10 1 3.0770 3.8637 1.3436 11 6 2.1974 -1.2687 0.0060 12 1 3.2692 -1.0701 0.0089 13 6 1.8229 -2.0688 1.2558 14 6 2.6122 -3.3798 1.2798 15 6 2.2495 -4.2123 0.0460 16 7 2.4702 -3.3969 -1.1562 17 6 3.2452 -3.8509 -2.1610 18 8 3.8489 -4.8989 -2.0373 19 6 3.3611 -3.0750 -3.4132 20 6 4.5736 -3.0749 -4.1257 21 6 4.7034 -2.3749 -5.2809 22 6 3.6209 -1.6246 -5.7774 23 7 3.7350 -0.9245 -6.9102 24 6 2.7340 -0.2215 -7.3824 25 6 1.5037 -0.1679 -6.7312 26 6 1.3176 -0.8605 -5.5688 27 6 2.3957 -1.6145 -5.0644 28 6 2.2765 -2.3472 -3.8752 29 6 1.8301 -2.0773 -1.2422 30 1 -0.3633 0.0963 -1.0232 31 1 -0.3634 -0.9343 0.4281 32 1 -0.3633 0.8379 0.5949 33 1 -0.1209 3.1472 -1.1808 34 1 2.0609 -1.4854 2.1452 35 1 0.7553 -2.2879 1.2402 36 1 3.6802 -3.1617 1.2704 37 1 2.3624 -3.9383 2.1818 38 1 2.8801 -5.1003 0.0061 39 1 1.2016 -4.5078 0.0998 40 1 5.4115 -3.6438 -3.7509 41 1 5.6405 -2.3893 -5.8176 42 1 2.8666 0.3302 -8.3014 43 1 0.6978 0.4199 -7.1453 44 1 0.3709 -0.8302 -5.0502 45 1 1.3473 -2.3452 -3.3248 46 1 0.7480 -2.1987 -1.2934 47 1 2.1839 -1.5567 -2.1320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027554241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:14 Heat of formation + Delta-G solvation = 45.300715 kcal Electronic energy + Delta-G solvation = -30054.580893 eV Core-core repulsion = 26202.777508 eV Total energy + Delta-G solvation = -3851.803385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.14604 -41.09631 -39.05540 -37.79212 -36.67357 -34.73024 -33.94187 -33.22344 -31.65488 -31.14666 -30.21758 -28.02761 -27.03491 -25.39219 -25.34921 -24.73318 -23.34176 -22.88790 -21.53515 -20.35125 -19.34425 -18.81495 -18.37538 -17.93576 -17.36181 -16.95924 -16.62366 -16.23599 -15.92536 -15.58127 -15.43391 -15.30323 -15.22323 -15.06739 -14.73590 -14.39531 -14.30323 -14.08501 -13.97098 -13.78451 -13.48038 -13.17284 -13.00813 -12.81356 -12.64294 -12.52448 -12.46606 -12.18872 -12.16226 -12.05426 -11.80507 -11.57664 -11.55425 -11.44232 -11.02545 -10.60272 -10.52172 -9.91125 -9.71778 -9.30418 -8.79500 -7.82748 -5.22319 -0.81714 -0.33750 0.84873 1.35904 1.44357 1.47369 1.54708 1.81782 2.16347 2.50794 3.04446 3.18968 3.30261 3.34183 3.49425 3.67816 3.72809 3.87649 3.94529 3.98704 4.02482 4.03555 4.12719 4.25169 4.30198 4.35231 4.47994 4.57421 4.64589 4.70697 4.76155 4.81835 4.85526 4.89928 4.97052 4.99348 5.03246 5.09377 5.19543 5.23738 5.32049 5.40139 5.45860 5.49120 5.56221 5.62878 5.74373 5.77921 6.22605 6.33096 6.85473 6.98266 7.16805 7.88954 8.28630 9.20023 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007766 B = 0.005286 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3604.703475 B = 5295.334909 C = 7903.056286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.604 5.604 3 C -0.259 4.259 4 H 0.063 0.937 5 C -0.044 4.044 6 N -0.928 5.928 7 Si 0.954 3.046 8 H -0.290 1.290 9 H -0.291 1.291 10 H -0.276 1.276 11 C 0.165 3.835 12 H 0.045 0.955 13 C -0.124 4.124 14 C -0.120 4.120 15 C 0.109 3.891 16 N -0.596 5.596 17 C 0.561 3.439 18 O -0.571 6.571 19 C -0.147 4.147 20 C -0.060 4.060 21 C -0.105 4.105 22 C 0.124 3.876 23 N -0.506 5.506 24 C 0.141 3.859 25 C -0.174 4.174 26 C -0.055 4.055 27 C -0.129 4.129 28 C -0.047 4.047 29 C 0.089 3.911 30 H 0.008 0.992 31 H 0.033 0.967 32 H 0.018 0.982 33 H 0.248 0.752 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.196 0.804 43 H 0.173 0.827 44 H 0.154 0.846 45 H 0.150 0.850 46 H 0.076 0.924 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.245 -9.765 -7.111 12.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.327 5.327 3 C -0.390 4.390 4 H 0.081 0.919 5 C -0.239 4.239 6 N -0.575 5.575 7 Si 0.783 3.217 8 H -0.217 1.217 9 H -0.217 1.217 10 H -0.202 1.202 11 C 0.057 3.943 12 H 0.063 0.937 13 C -0.163 4.163 14 C -0.158 4.158 15 C -0.012 4.012 16 N -0.327 5.327 17 C 0.351 3.649 18 O -0.452 6.452 19 C -0.150 4.150 20 C -0.081 4.081 21 C -0.123 4.123 22 C 0.003 3.997 23 N -0.215 5.215 24 C -0.031 4.031 25 C -0.194 4.194 26 C -0.080 4.080 27 C -0.131 4.131 28 C -0.067 4.067 29 C -0.035 4.035 30 H 0.026 0.974 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.163 0.837 41 H 0.174 0.826 42 H 0.213 0.787 43 H 0.191 0.809 44 H 0.172 0.828 45 H 0.167 0.833 46 H 0.094 0.906 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.291 -10.260 -7.419 12.727 hybrid contribution -0.526 1.400 0.677 1.641 sum 0.765 -8.860 -6.742 11.160 Atomic orbital electron populations 1.20561 0.82093 0.96138 0.97887 1.44093 1.02244 1.00572 1.85777 1.19434 0.94688 0.85608 1.39228 0.91882 1.25414 0.98246 1.00444 0.99829 1.70220 1.17811 1.26370 1.43083 0.85485 0.77316 0.80902 0.78018 1.21748 1.21719 1.20152 1.20745 0.95011 0.85295 0.93273 0.93680 1.21955 1.00551 0.95769 0.98059 1.21838 0.99975 0.95766 0.98232 1.21816 1.02541 0.94032 0.82784 1.48154 1.47963 1.18452 1.18169 1.18414 0.78263 0.84681 0.83589 1.90713 1.47092 1.25149 1.82280 1.19923 0.96442 1.01739 0.96894 1.20889 0.96480 0.97079 0.93625 1.20841 0.98706 0.96633 0.96139 1.19245 0.92953 0.95757 0.91758 1.68099 1.32844 1.08629 1.11883 1.23717 0.87909 0.92296 0.99197 1.22299 1.00232 1.00709 0.96119 1.21893 0.98264 0.92500 0.95383 1.18979 0.96075 1.01191 0.96899 1.21878 0.99114 0.92015 0.93650 1.22909 0.97642 0.81645 1.01277 0.97387 0.94842 0.96311 0.94281 0.92625 0.91328 0.92675 0.87997 0.89235 0.89430 0.83737 0.82642 0.78691 0.80935 0.82787 0.83303 0.90573 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 7.92 7.92 127.77 1.01 8.93 16 2 N -0.60 -27.73 2.82 -702.35 -1.98 -29.72 16 3 C -0.26 -13.63 9.67 84.03 0.81 -12.82 16 4 H 0.06 3.32 7.78 -2.91 -0.02 3.30 16 5 C -0.04 -2.34 5.05 84.86 0.43 -1.92 16 6 N -0.93 -51.34 10.52 21.65 0.23 -51.12 16 7 Si 0.95 43.96 29.59 68.60 2.03 45.99 16 8 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 9 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 C 0.16 6.14 2.74 45.07 0.12 6.27 16 12 H 0.04 1.85 7.82 -2.38 -0.02 1.83 16 13 C -0.12 -3.73 5.13 30.62 0.16 -3.58 16 14 C -0.12 -2.88 6.08 30.68 0.19 -2.70 16 15 C 0.11 2.72 6.44 86.36 0.56 3.28 16 16 N -0.60 -17.86 2.97 -822.38 -2.44 -20.30 16 17 C 0.56 18.43 7.39 86.76 0.64 19.07 16 18 O -0.57 -21.05 16.19 -3.93 -0.06 -21.11 16 19 C -0.15 -4.59 5.37 -20.10 -0.11 -4.70 16 20 C -0.06 -1.74 9.49 22.27 0.21 -1.53 16 21 C -0.10 -2.91 9.95 22.30 0.22 -2.69 16 22 C 0.12 3.72 6.61 40.35 0.27 3.99 16 23 N -0.51 -14.09 10.33 -188.45 -1.95 -16.03 16 24 C 0.14 2.99 11.15 85.06 0.95 3.94 16 25 C -0.17 -3.55 10.03 22.14 0.22 -3.32 16 26 C -0.05 -1.37 9.89 22.53 0.22 -1.15 16 27 C -0.13 -3.83 5.74 -21.29 -0.12 -3.95 16 28 C -0.05 -1.41 7.10 22.82 0.16 -1.25 16 29 C 0.09 2.92 4.09 86.36 0.35 3.28 16 30 H 0.01 0.38 7.50 -2.39 -0.02 0.36 16 31 H 0.03 1.24 6.45 -2.39 -0.02 1.22 16 32 H 0.02 0.92 6.97 -2.39 -0.02 0.90 16 33 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.07 1.96 6.71 -2.39 -0.02 1.94 16 36 H 0.05 1.45 8.14 -2.38 -0.02 1.44 16 37 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.09 2.29 7.00 -2.39 -0.02 2.27 16 39 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.14 3.81 7.96 -2.91 -0.02 3.79 16 41 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 42 H 0.20 2.51 8.06 -2.91 -0.02 2.49 16 43 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 44 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 45 H 0.15 4.19 5.78 -2.91 -0.02 4.17 16 46 H 0.08 2.37 7.41 -2.39 -0.02 2.35 16 47 H 0.09 3.06 4.32 -2.39 -0.01 3.05 16 Total: -1.00 -66.85 372.36 3.10 -63.75 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.99 Total: 19.39 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 6.30 Total: 9.15 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -6.15 Total: -117.17 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.06 Total: -21.11 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -66.85 3.10 -63.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027554241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.050 kcal (2) G-P(sol) polarization free energy of solvation -66.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds