Wall clock time and date at job start Sat Apr 11 2020 05:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36936 * 119.99653 * 2 1 4 4 H 1.08010 * 119.99921 * 203.68333 * 3 2 1 5 5 C 1.38804 * 120.00557 * 23.68814 * 3 2 1 6 6 N 1.31624 * 119.99729 * 11.50344 * 5 3 2 7 7 Si 1.86796 * 120.00348 * 191.51320 * 5 3 2 8 8 H 1.48497 * 109.47189 * 359.97438 * 7 5 3 9 9 H 1.48505 * 109.47449 * 119.99792 * 7 5 3 10 10 H 1.48500 * 109.47133 * 239.99834 * 7 5 3 11 11 C 1.46494 * 120.00123 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.49917 * 179.97438 * 11 2 1 13 13 C 1.53041 * 109.49940 * 59.83190 * 11 2 1 14 14 C 1.53045 * 109.53648 * 178.68609 * 13 11 2 15 15 C 1.52753 * 109.38366 * 61.24305 * 14 13 11 16 16 N 1.46925 * 109.01007 * 305.58292 * 15 14 13 17 17 C 1.34774 * 120.63564 * 233.58866 * 16 15 14 18 18 O 1.21563 * 120.00227 * 183.97775 * 17 16 15 19 19 C 1.47764 * 119.99624 * 3.97240 * 17 16 15 20 20 C 1.40630 * 119.80534 * 134.09110 * 19 17 16 21 21 C 1.35698 * 120.92481 * 180.02562 * 20 19 17 22 22 C 1.40757 * 120.11450 * 0.02562 * 21 20 19 23 23 N 1.33651 * 120.83043 * 180.24623 * 22 21 20 24 24 C 1.31123 * 121.38781 * 180.28069 * 23 22 21 25 25 C 1.39316 * 121.77094 * 359.44386 * 24 23 22 26 26 C 1.36584 * 119.90370 * 0.27361 * 25 24 23 27 27 C 1.40889 * 118.15903 * 359.97438 * 26 25 24 28 28 C 1.38555 * 119.80860 * 314.12987 * 19 17 16 29 29 C 1.46931 * 118.73499 * 53.31140 * 16 15 14 30 30 H 1.09002 * 109.46474 * 275.17906 * 1 2 3 31 31 H 1.08999 * 109.47565 * 35.17970 * 1 2 3 32 32 H 1.09001 * 109.47540 * 155.18364 * 1 2 3 33 33 H 0.96997 * 119.99771 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.45858 * 298.70396 * 13 11 2 35 35 H 1.08997 * 109.45847 * 58.66908 * 13 11 2 36 36 H 1.09005 * 109.49114 * 181.32136 * 14 13 11 37 37 H 1.09001 * 109.49494 * 301.37805 * 14 13 11 38 38 H 1.09004 * 109.50815 * 185.70747 * 15 14 13 39 39 H 1.08996 * 109.43386 * 65.42463 * 15 14 13 40 40 H 1.08014 * 119.53836 * 359.97438 * 20 19 17 41 41 H 1.08010 * 119.94515 * 179.97438 * 21 20 19 42 42 H 1.07997 * 119.11563 * 179.70998 * 24 23 22 43 43 H 1.07996 * 120.04870 * 180.25746 * 25 24 23 44 44 H 1.08001 * 120.92100 * 180.02562 * 26 25 24 45 45 H 1.07995 * 120.29318 * 359.95714 * 28 19 17 46 46 H 1.08999 * 109.58332 * 66.43241 * 29 16 15 47 47 H 1.08995 * 109.58576 * 186.85510 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1615 1.2254 -0.3757 5 6 1.5433 2.3374 0.4829 6 7 0.4084 2.2556 1.1445 7 14 2.3379 4.0030 0.1938 8 1 3.5988 3.8241 -0.5699 9 1 1.4094 4.8672 -0.5785 10 1 2.6376 4.6420 1.5003 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0700 -0.0009 13 6 1.8251 -2.0730 -1.2482 14 6 2.6144 -3.3841 -1.2663 15 6 2.2541 -4.2099 -0.0329 16 7 2.4683 -3.3930 1.1694 17 6 3.2420 -3.8433 2.1769 18 8 3.3533 -3.1905 3.1963 19 6 3.9548 -5.1307 2.0423 20 6 5.3082 -5.2224 2.4131 21 6 5.9849 -6.3930 2.2985 22 6 5.3350 -7.5388 1.8024 23 7 5.9863 -8.7002 1.6882 24 6 5.3932 -9.7729 1.2224 25 6 4.0552 -9.7612 0.8345 26 6 3.3284 -8.6087 0.9301 27 6 3.9706 -7.4570 1.4262 28 6 3.2860 -6.2401 1.5507 29 6 1.8279 -2.0730 1.2498 30 1 -0.3632 0.0928 1.0235 31 1 -0.3634 0.8399 -0.5921 32 1 -0.3634 -0.9328 -0.4313 33 1 -0.0151 3.0603 1.4823 34 1 0.7574 -2.2921 -1.2336 35 1 2.0645 -1.4927 -2.1392 36 1 2.3662 -3.9456 -2.1670 37 1 3.6823 -3.1659 -1.2565 38 1 2.8877 -5.0959 0.0098 39 1 1.2075 -4.5090 -0.0898 40 1 5.8164 -4.3486 2.7938 41 1 7.0242 -6.4455 2.5876 42 1 5.9558 -10.6911 1.1413 43 1 3.5933 -10.6621 0.4584 44 1 2.2900 -8.5813 0.6344 45 1 2.2467 -6.1680 1.2664 46 1 0.7459 -2.1943 1.2996 47 1 2.1803 -1.5495 2.1384 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027554242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:19 Heat of formation + Delta-G solvation = 56.964474 kcal Electronic energy + Delta-G solvation = -29175.765749 eV Core-core repulsion = 25324.468142 eV Total energy + Delta-G solvation = -3851.297606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.27228 -39.97759 -37.69192 -36.79950 -35.16705 -33.87924 -32.44407 -31.38127 -30.94841 -30.50476 -28.62442 -26.03002 -25.90371 -24.50954 -24.09460 -23.33953 -22.50473 -21.67702 -20.35447 -18.87564 -18.43558 -17.54100 -17.15663 -16.76574 -16.34041 -15.59465 -15.27299 -15.02035 -14.69769 -14.54883 -14.34338 -14.21082 -14.04608 -13.70008 -13.46708 -13.42468 -13.30293 -12.74323 -12.56481 -12.44351 -12.38928 -11.91954 -11.88518 -11.71303 -11.16030 -11.05145 -10.89560 -10.82535 -10.59668 -10.43336 -10.36772 -10.18998 -9.93294 -9.86398 -9.76865 -9.65011 -9.09637 -8.62117 -8.52272 -8.35883 -6.76150 -5.73101 -3.20992 -0.04937 0.41323 1.60247 2.32455 2.91556 3.19723 3.38411 3.45474 3.47480 3.77849 3.94064 4.19921 4.33304 4.38658 4.48378 4.50831 4.73145 4.76007 4.91636 4.96968 5.07363 5.14530 5.26803 5.41102 5.42608 5.48238 5.52306 5.54723 5.62020 5.69612 5.73711 5.87372 5.92867 5.95753 6.06728 6.09665 6.15502 6.20699 6.34919 6.44252 6.48381 6.63309 6.74740 6.90237 6.95305 7.35950 7.55290 7.57431 7.72015 7.80790 8.27201 8.39696 9.22456 9.84530 10.33312 11.31227 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023392 B = 0.002521 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.699254 B =11104.674067 C =11575.288987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.591 5.591 3 C -0.256 4.256 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.906 3.094 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.169 3.831 12 H 0.065 0.935 13 C -0.133 4.133 14 C -0.131 4.131 15 C 0.092 3.908 16 N -0.597 5.597 17 C 0.551 3.449 18 O -0.530 6.530 19 C -0.108 4.108 20 C -0.056 4.056 21 C -0.097 4.097 22 C 0.138 3.862 23 N -0.476 5.476 24 C 0.135 3.865 25 C -0.180 4.180 26 C -0.049 4.049 27 C -0.109 4.109 28 C -0.066 4.066 29 C 0.098 3.902 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.000 1.000 33 H 0.252 0.748 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.159 0.841 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.063 0.937 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.276 -25.282 -3.644 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.313 5.313 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.195 4.195 6 N -0.550 5.550 7 Si 0.736 3.264 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.059 3.941 12 H 0.083 0.917 13 C -0.173 4.173 14 C -0.170 4.170 15 C -0.031 4.031 16 N -0.329 5.329 17 C 0.338 3.662 18 O -0.407 6.407 19 C -0.111 4.111 20 C -0.076 4.076 21 C -0.115 4.115 22 C 0.017 3.983 23 N -0.184 5.184 24 C -0.038 4.038 25 C -0.200 4.200 26 C -0.075 4.075 27 C -0.111 4.111 28 C -0.086 4.086 29 C -0.025 4.025 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.018 0.982 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.177 0.823 43 H 0.156 0.844 44 H 0.159 0.841 45 H 0.159 0.841 46 H 0.082 0.918 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.087 -24.643 -2.742 25.531 hybrid contribution -0.689 0.907 -0.393 1.205 sum 5.398 -23.736 -3.135 24.543 Atomic orbital electron populations 1.20808 0.82595 0.95459 0.99540 1.43935 1.01848 1.00000 1.85493 1.19251 0.98803 0.85389 1.35079 0.91370 1.25073 0.97815 0.98675 0.97956 1.70068 1.18854 1.27271 1.38823 0.86165 0.78623 0.84181 0.77457 1.20312 1.21626 1.21660 1.20635 0.96539 0.86233 0.90659 0.91696 1.22096 0.99623 0.94951 1.00632 1.21833 1.01176 0.97314 0.96689 1.22097 1.01407 0.94516 0.85033 1.48236 1.48215 1.19321 1.17178 1.18274 0.79195 0.85069 0.83651 1.90824 1.63405 1.58006 1.28489 1.20074 0.95316 0.94323 1.01433 1.20881 0.92499 0.98428 0.95836 1.20707 1.00758 0.90372 0.99691 1.18986 0.90040 0.92606 0.96703 1.68072 1.37928 0.98709 1.13716 1.23020 0.92335 0.96557 0.91866 1.21892 0.95973 0.99401 1.02763 1.21545 1.00157 0.91541 0.94304 1.18746 0.94974 0.94828 1.02541 1.21544 1.00049 0.90846 0.96146 1.22630 0.96818 0.80475 1.02573 0.95045 0.93967 0.98200 0.93743 0.92219 0.91642 0.91200 0.91705 0.89345 0.91282 0.84225 0.84077 0.82341 0.84360 0.84107 0.84083 0.91834 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 7.91 59.85 0.47 4.32 16 2 N -0.59 -14.52 2.81 -173.35 -0.49 -15.01 16 3 C -0.26 -7.00 9.58 -15.06 -0.14 -7.14 16 4 H 0.07 1.84 7.82 -52.48 -0.41 1.43 16 5 C 0.00 0.10 5.13 -17.43 -0.09 0.01 16 6 N -0.91 -26.39 10.67 55.49 0.59 -25.80 16 7 Si 0.91 22.00 29.57 -169.99 -5.03 16.98 16 8 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 C 0.17 3.38 2.74 -67.81 -0.19 3.20 16 12 H 0.06 1.39 7.87 -51.93 -0.41 0.98 16 13 C -0.13 -2.14 5.13 -26.69 -0.14 -2.28 16 14 C -0.13 -1.61 6.06 -26.83 -0.16 -1.77 16 15 C 0.09 1.07 5.16 -3.94 -0.02 1.05 16 16 N -0.60 -9.27 2.98 -174.18 -0.52 -9.79 16 17 C 0.55 9.04 7.27 -12.37 -0.09 8.95 16 18 O -0.53 -10.92 16.42 5.31 0.09 -10.83 16 19 C -0.11 -1.40 5.19 -104.98 -0.54 -1.94 16 20 C -0.06 -0.67 9.57 -39.59 -0.38 -1.05 16 21 C -0.10 -1.06 9.95 -39.54 -0.39 -1.45 16 22 C 0.14 1.55 6.61 -84.78 -0.56 0.99 16 23 N -0.48 -5.08 10.33 -10.92 -0.11 -5.19 16 24 C 0.13 1.02 11.15 -17.45 -0.19 0.82 16 25 C -0.18 -1.11 10.03 -39.78 -0.40 -1.51 16 26 C -0.05 -0.36 9.89 -39.18 -0.39 -0.74 16 27 C -0.11 -1.08 5.74 -106.82 -0.61 -1.70 16 28 C -0.07 -0.69 7.05 -38.74 -0.27 -0.96 16 29 C 0.10 1.88 5.78 -3.71 -0.02 1.86 16 30 H 0.03 0.82 7.33 -51.93 -0.38 0.44 16 31 H 0.04 1.09 7.35 -51.93 -0.38 0.71 16 32 H 0.00 -0.01 6.45 -51.93 -0.34 -0.34 16 33 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.06 0.95 6.71 -51.93 -0.35 0.60 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 0.86 4.24 -51.93 -0.22 0.64 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.14 1.63 8.06 -52.48 -0.42 1.20 16 41 H 0.14 1.31 8.06 -52.48 -0.42 0.88 16 42 H 0.16 0.69 8.06 -52.49 -0.42 0.26 16 43 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 44 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 45 H 0.14 1.19 6.56 -52.49 -0.34 0.85 16 46 H 0.06 1.22 7.52 -51.93 -0.39 0.83 16 47 H 0.09 2.11 7.03 -51.93 -0.36 1.74 16 LS Contribution 374.09 15.07 5.64 5.64 Total: -1.00 -33.54 374.09 -10.48 -44.01 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.53 Total: -0.65 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -4.12 Total: 0.64 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.53 Total: -55.79 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.54 -10.48 -44.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027554242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.979 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds