Wall clock time and date at job start Sat Apr 11 2020 05:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36936 * 119.99653 * 2 1 4 4 H 1.08010 * 119.99921 * 203.68333 * 3 2 1 5 5 C 1.38804 * 120.00557 * 23.68814 * 3 2 1 6 6 N 1.31624 * 119.99729 * 11.50344 * 5 3 2 7 7 Si 1.86796 * 120.00348 * 191.51320 * 5 3 2 8 8 H 1.48497 * 109.47189 * 359.97438 * 7 5 3 9 9 H 1.48505 * 109.47449 * 119.99792 * 7 5 3 10 10 H 1.48500 * 109.47133 * 239.99834 * 7 5 3 11 11 C 1.46494 * 120.00123 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.49917 * 179.97438 * 11 2 1 13 13 C 1.53041 * 109.49940 * 59.83190 * 11 2 1 14 14 C 1.53045 * 109.53648 * 178.68609 * 13 11 2 15 15 C 1.52753 * 109.38366 * 61.24305 * 14 13 11 16 16 N 1.46925 * 109.01007 * 305.58292 * 15 14 13 17 17 C 1.34774 * 120.63564 * 233.58866 * 16 15 14 18 18 O 1.21563 * 120.00227 * 183.97775 * 17 16 15 19 19 C 1.47764 * 119.99624 * 3.97240 * 17 16 15 20 20 C 1.40630 * 119.80534 * 134.09110 * 19 17 16 21 21 C 1.35698 * 120.92481 * 180.02562 * 20 19 17 22 22 C 1.40757 * 120.11450 * 0.02562 * 21 20 19 23 23 N 1.33651 * 120.83043 * 180.24623 * 22 21 20 24 24 C 1.31123 * 121.38781 * 180.28069 * 23 22 21 25 25 C 1.39316 * 121.77094 * 359.44386 * 24 23 22 26 26 C 1.36584 * 119.90370 * 0.27361 * 25 24 23 27 27 C 1.40889 * 118.15903 * 359.97438 * 26 25 24 28 28 C 1.38555 * 119.80860 * 314.12987 * 19 17 16 29 29 C 1.46931 * 118.73499 * 53.31140 * 16 15 14 30 30 H 1.09002 * 109.46474 * 275.17906 * 1 2 3 31 31 H 1.08999 * 109.47565 * 35.17970 * 1 2 3 32 32 H 1.09001 * 109.47540 * 155.18364 * 1 2 3 33 33 H 0.96997 * 119.99771 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.45858 * 298.70396 * 13 11 2 35 35 H 1.08997 * 109.45847 * 58.66908 * 13 11 2 36 36 H 1.09005 * 109.49114 * 181.32136 * 14 13 11 37 37 H 1.09001 * 109.49494 * 301.37805 * 14 13 11 38 38 H 1.09004 * 109.50815 * 185.70747 * 15 14 13 39 39 H 1.08996 * 109.43386 * 65.42463 * 15 14 13 40 40 H 1.08014 * 119.53836 * 359.97438 * 20 19 17 41 41 H 1.08010 * 119.94515 * 179.97438 * 21 20 19 42 42 H 1.07997 * 119.11563 * 179.70998 * 24 23 22 43 43 H 1.07996 * 120.04870 * 180.25746 * 25 24 23 44 44 H 1.08001 * 120.92100 * 180.02562 * 26 25 24 45 45 H 1.07995 * 120.29318 * 359.95714 * 28 19 17 46 46 H 1.08999 * 109.58332 * 66.43241 * 29 16 15 47 47 H 1.08995 * 109.58576 * 186.85510 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1615 1.2254 -0.3757 5 6 1.5433 2.3374 0.4829 6 7 0.4084 2.2556 1.1445 7 14 2.3379 4.0030 0.1938 8 1 3.5988 3.8241 -0.5699 9 1 1.4094 4.8672 -0.5785 10 1 2.6376 4.6420 1.5003 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0700 -0.0009 13 6 1.8251 -2.0730 -1.2482 14 6 2.6144 -3.3841 -1.2663 15 6 2.2541 -4.2099 -0.0329 16 7 2.4683 -3.3930 1.1694 17 6 3.2420 -3.8433 2.1769 18 8 3.3533 -3.1905 3.1963 19 6 3.9548 -5.1307 2.0423 20 6 5.3082 -5.2224 2.4131 21 6 5.9849 -6.3930 2.2985 22 6 5.3350 -7.5388 1.8024 23 7 5.9863 -8.7002 1.6882 24 6 5.3932 -9.7729 1.2224 25 6 4.0552 -9.7612 0.8345 26 6 3.3284 -8.6087 0.9301 27 6 3.9706 -7.4570 1.4262 28 6 3.2860 -6.2401 1.5507 29 6 1.8279 -2.0730 1.2498 30 1 -0.3632 0.0928 1.0235 31 1 -0.3634 0.8399 -0.5921 32 1 -0.3634 -0.9328 -0.4313 33 1 -0.0151 3.0603 1.4823 34 1 0.7574 -2.2921 -1.2336 35 1 2.0645 -1.4927 -2.1392 36 1 2.3662 -3.9456 -2.1670 37 1 3.6823 -3.1659 -1.2565 38 1 2.8877 -5.0959 0.0098 39 1 1.2075 -4.5090 -0.0898 40 1 5.8164 -4.3486 2.7938 41 1 7.0242 -6.4455 2.5876 42 1 5.9558 -10.6911 1.1413 43 1 3.5933 -10.6621 0.4584 44 1 2.2900 -8.5813 0.6344 45 1 2.2467 -6.1680 1.2664 46 1 0.7459 -2.1943 1.2996 47 1 2.1803 -1.5495 2.1384 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027554242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:18 Heat of formation + Delta-G solvation = 36.501306 kcal Electronic energy + Delta-G solvation = -29176.653098 eV Core-core repulsion = 25324.468142 eV Total energy + Delta-G solvation = -3852.184956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.10817 -41.08700 -39.06074 -37.74991 -36.83599 -34.61848 -33.97617 -32.87747 -31.87604 -31.39035 -30.11303 -28.06133 -27.01615 -25.49134 -25.27493 -24.52038 -23.39749 -22.90396 -21.64313 -20.25814 -19.30693 -18.85585 -18.42752 -17.90912 -17.37801 -17.01561 -16.59629 -16.22031 -15.85952 -15.54045 -15.42369 -15.29789 -15.25220 -15.05403 -14.75611 -14.42152 -14.31631 -14.00575 -13.96359 -13.84326 -13.53430 -13.17767 -13.00681 -12.85701 -12.70206 -12.51338 -12.46925 -12.22001 -12.11532 -12.08324 -11.79730 -11.71557 -11.48520 -11.40574 -11.01663 -10.68185 -10.45952 -9.89264 -9.71906 -9.28564 -8.77563 -7.85584 -5.35724 -0.76144 -0.30832 0.90588 1.37757 1.42847 1.44120 1.54391 1.76837 2.11110 2.48224 3.06230 3.23428 3.27715 3.38659 3.53766 3.59979 3.75687 3.94320 3.96183 4.02164 4.04758 4.08177 4.11016 4.23322 4.33557 4.34918 4.52766 4.57713 4.65404 4.73375 4.75558 4.84352 4.87748 4.92339 4.94246 5.02207 5.04787 5.12707 5.23840 5.25987 5.27039 5.40110 5.43295 5.48754 5.54266 5.61630 5.71919 5.78144 6.30551 6.33840 6.93007 7.00893 7.12852 7.83947 8.26361 9.16585 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023392 B = 0.002521 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.699254 B =11104.674067 C =11575.288987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.608 5.608 3 C -0.264 4.264 4 H 0.065 0.935 5 C -0.052 4.052 6 N -0.936 5.936 7 Si 0.969 3.031 8 H -0.268 1.268 9 H -0.286 1.286 10 H -0.295 1.295 11 C 0.167 3.833 12 H 0.042 0.958 13 C -0.122 4.122 14 C -0.123 4.123 15 C 0.088 3.912 16 N -0.594 5.594 17 C 0.549 3.451 18 O -0.588 6.588 19 C -0.133 4.133 20 C -0.070 4.070 21 C -0.100 4.100 22 C 0.122 3.878 23 N -0.512 5.512 24 C 0.138 3.862 25 C -0.170 4.170 26 C -0.047 4.047 27 C -0.122 4.122 28 C -0.044 4.044 29 C 0.114 3.886 30 H 0.001 0.999 31 H 0.015 0.985 32 H 0.039 0.961 33 H 0.248 0.752 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.111 0.889 37 H 0.056 0.944 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.127 0.873 41 H 0.148 0.852 42 H 0.190 0.810 43 H 0.178 0.822 44 H 0.176 0.824 45 H 0.167 0.833 46 H 0.066 0.934 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.819 -29.693 -6.214 30.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.331 5.331 3 C -0.395 4.395 4 H 0.083 0.917 5 C -0.247 4.247 6 N -0.583 5.583 7 Si 0.797 3.203 8 H -0.192 1.192 9 H -0.213 1.213 10 H -0.222 1.222 11 C 0.059 3.941 12 H 0.060 0.940 13 C -0.161 4.161 14 C -0.162 4.162 15 C -0.032 4.032 16 N -0.326 5.326 17 C 0.339 3.661 18 O -0.469 6.469 19 C -0.137 4.137 20 C -0.091 4.091 21 C -0.118 4.118 22 C 0.001 3.999 23 N -0.221 5.221 24 C -0.034 4.034 25 C -0.190 4.190 26 C -0.073 4.073 27 C -0.124 4.124 28 C -0.063 4.063 29 C -0.010 4.010 30 H 0.019 0.981 31 H 0.034 0.966 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.130 0.870 37 H 0.075 0.925 38 H 0.132 0.868 39 H 0.116 0.884 40 H 0.145 0.855 41 H 0.166 0.834 42 H 0.207 0.793 43 H 0.196 0.804 44 H 0.193 0.807 45 H 0.184 0.816 46 H 0.084 0.916 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.649 -29.115 -5.362 30.138 hybrid contribution -0.480 2.001 0.374 2.091 sum 5.170 -27.114 -4.988 28.049 Atomic orbital electron populations 1.20523 0.82409 0.96261 0.97490 1.44153 1.02248 1.00902 1.85770 1.19536 0.98801 0.86880 1.34243 0.91698 1.25830 0.98621 1.01989 0.98310 1.70231 1.20187 1.27690 1.40143 0.85181 0.78121 0.80022 0.76993 1.19198 1.21260 1.22174 1.20783 0.94812 0.85330 0.93169 0.93999 1.21925 1.00751 0.96115 0.97313 1.21821 1.00002 0.95571 0.98776 1.22473 1.03772 0.94430 0.82566 1.48236 1.47589 1.18164 1.18581 1.18867 0.78541 0.85914 0.82778 1.90784 1.65161 1.60099 1.30836 1.19734 0.95551 0.93295 1.05071 1.20784 0.92674 0.98645 0.96974 1.20767 1.01098 0.90247 0.99728 1.19161 0.90959 0.92845 0.96933 1.68098 1.38977 0.99334 1.15697 1.23732 0.93518 0.96576 0.89603 1.22344 0.95124 1.00516 1.00978 1.21978 1.01736 0.90494 0.93071 1.18934 0.94594 0.95709 1.03149 1.21738 1.00736 0.89907 0.93941 1.22067 0.96779 0.82269 0.99928 0.98103 0.96568 0.94254 0.94224 0.91272 0.92439 0.87042 0.92539 0.86817 0.88392 0.85524 0.83446 0.79341 0.80416 0.80677 0.81582 0.91612 0.93737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.73 7.91 127.77 1.01 9.74 16 2 N -0.61 -30.83 2.81 -702.35 -1.98 -32.80 16 3 C -0.26 -14.98 9.58 84.03 0.81 -14.18 16 4 H 0.07 3.63 7.82 -2.91 -0.02 3.61 16 5 C -0.05 -3.01 5.13 84.86 0.44 -2.58 16 6 N -0.94 -56.77 10.67 21.65 0.23 -56.54 16 7 Si 0.97 46.55 29.57 68.60 2.03 48.58 16 8 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 9 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 10 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 11 C 0.17 6.85 2.74 45.07 0.12 6.97 16 12 H 0.04 1.88 7.87 -2.39 -0.02 1.86 16 13 C -0.12 -3.68 5.13 30.62 0.16 -3.53 16 14 C -0.12 -2.60 6.06 30.53 0.19 -2.42 16 15 C 0.09 1.74 5.16 86.22 0.44 2.19 16 16 N -0.59 -18.38 2.98 -823.25 -2.45 -20.83 16 17 C 0.55 18.71 7.27 86.76 0.63 19.34 16 18 O -0.59 -26.18 16.42 -3.91 -0.06 -26.25 16 19 C -0.13 -3.43 5.19 -20.10 -0.10 -3.54 16 20 C -0.07 -1.78 9.57 22.27 0.21 -1.56 16 21 C -0.10 -2.22 9.95 22.30 0.22 -1.99 16 22 C 0.12 2.55 6.61 40.35 0.27 2.81 16 23 N -0.51 -9.81 10.33 -188.45 -1.95 -11.75 16 24 C 0.14 1.52 11.15 85.06 0.95 2.46 16 25 C -0.17 -1.16 10.03 22.14 0.22 -0.93 16 26 C -0.05 -0.43 9.89 22.53 0.22 -0.21 16 27 C -0.12 -2.04 5.74 -21.29 -0.12 -2.16 16 28 C -0.04 -0.80 7.05 22.82 0.16 -0.64 16 29 C 0.11 4.55 5.78 86.36 0.50 5.04 16 30 H 0.00 0.04 7.33 -2.39 -0.02 0.02 16 31 H 0.02 0.84 7.35 -2.39 -0.02 0.82 16 32 H 0.04 1.58 6.45 -2.39 -0.02 1.56 16 33 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 34 H 0.07 1.98 6.71 -2.39 -0.02 1.96 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.11 1.75 4.24 -2.38 -0.01 1.74 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.13 3.35 8.06 -2.90 -0.02 3.33 16 41 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 42 H 0.19 0.77 8.06 -2.91 -0.02 0.74 16 43 H 0.18 -0.15 8.06 -2.91 -0.02 -0.18 16 44 H 0.18 0.39 8.06 -2.91 -0.02 0.36 16 45 H 0.17 2.06 6.56 -2.91 -0.02 2.04 16 46 H 0.07 2.56 7.52 -2.39 -0.02 2.54 16 47 H 0.04 2.19 7.03 -2.39 -0.02 2.17 16 Total: -1.00 -80.40 374.09 3.12 -77.28 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 0.98 Total: 7.49 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 6.32 Total: 14.82 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -6.14 Total: -121.93 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.06 Total: -26.25 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -80.40 3.12 -77.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027554242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.776 kcal (2) G-P(sol) polarization free energy of solvation -80.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds