Wall clock time and date at job start Sat Apr 11 2020 05:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36930 * 120.00169 * 2 1 4 4 H 1.08004 * 119.99947 * 164.18328 * 3 2 1 5 5 C 1.38813 * 120.00258 * 344.18034 * 3 2 1 6 6 N 1.31615 * 119.99459 * 343.13251 * 5 3 2 7 7 Si 1.86799 * 120.00087 * 163.13097 * 5 3 2 8 8 H 1.48504 * 109.47174 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47421 * 120.00278 * 7 5 3 10 10 H 1.48505 * 109.47057 * 240.00137 * 7 5 3 11 11 C 1.46501 * 119.99462 * 179.72323 * 2 1 3 12 12 H 1.09000 * 109.49646 * 180.21222 * 11 2 1 13 13 C 1.53039 * 109.49874 * 300.27526 * 11 2 1 14 14 C 1.53045 * 109.53947 * 181.31819 * 13 11 2 15 15 C 1.53185 * 109.31233 * 298.63852 * 14 13 11 16 16 N 1.46927 * 108.77922 * 54.63049 * 15 14 13 17 17 C 1.34776 * 120.62877 * 126.41235 * 16 15 14 18 18 O 1.21557 * 120.00241 * 354.51408 * 17 16 15 19 19 C 1.47765 * 120.00066 * 174.51102 * 17 16 15 20 20 C 1.40590 * 120.26777 * 146.54771 * 19 17 16 21 21 N 1.30802 * 121.53822 * 179.76501 * 20 19 17 22 22 C 1.33820 * 121.71681 * 0.50202 * 21 20 19 23 23 C 1.40520 * 120.82272 * 179.74033 * 22 21 20 24 24 C 1.36136 * 119.82006 * 180.02562 * 23 22 21 25 25 C 1.39347 * 121.08642 * 359.97438 * 24 23 22 26 26 C 1.36137 * 120.83167 * 0.06582 * 25 24 23 27 27 C 1.40543 * 119.62066 * 359.91182 * 26 25 24 28 28 C 1.39014 * 120.26287 * 326.83181 * 19 17 16 29 29 C 1.46922 * 118.73989 * 306.39638 * 16 15 14 30 30 H 1.09002 * 109.47231 * 84.64875 * 1 2 3 31 31 H 1.09000 * 109.47360 * 204.64686 * 1 2 3 32 32 H 1.08996 * 109.47058 * 324.65602 * 1 2 3 33 33 H 0.97006 * 119.99547 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.46431 * 301.34045 * 13 11 2 35 35 H 1.09001 * 109.45801 * 61.29794 * 13 11 2 36 36 H 1.08997 * 109.49353 * 58.58667 * 14 13 11 37 37 H 1.08999 * 109.49783 * 178.68197 * 14 13 11 38 38 H 1.08997 * 109.58776 * 174.42332 * 15 14 13 39 39 H 1.09004 * 109.58716 * 294.84312 * 15 14 13 40 40 H 1.08003 * 119.23181 * 0.02562 * 20 19 17 41 41 H 1.08000 * 120.09553 * 0.05324 * 23 22 21 42 42 H 1.07999 * 119.45796 * 180.02562 * 24 23 22 43 43 H 1.07994 * 119.58243 * 180.02562 * 25 24 23 44 44 H 1.08003 * 120.19295 * 179.97438 * 26 25 24 45 45 H 1.07997 * 121.02338 * 359.95093 * 28 19 17 46 46 H 1.09003 * 109.58425 * 293.81871 * 29 16 15 47 47 H 1.08998 * 109.58947 * 173.39382 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1991 1.2035 0.2549 5 6 1.4951 2.3653 -0.3277 6 7 0.3361 2.3236 -0.9500 7 14 2.2593 4.0115 0.1145 8 1 3.5545 3.7865 0.8052 9 1 2.4881 4.7995 -1.1232 10 1 1.3423 4.7573 1.0136 11 6 2.1974 -1.2688 0.0061 12 1 3.2691 -1.0702 0.0090 13 6 1.8229 -2.0688 1.2559 14 6 2.6121 -3.3798 1.2800 15 6 2.2493 -4.2123 0.0463 16 7 2.4700 -3.3970 -1.1560 17 6 3.2447 -3.8514 -2.1610 18 8 3.8483 -4.8991 -2.0371 19 6 3.3601 -3.0758 -3.4134 20 6 4.5655 -3.0737 -4.1371 21 7 4.6937 -2.3998 -5.2508 22 6 3.6892 -1.6715 -5.7520 23 6 3.8493 -0.9504 -6.9474 24 6 2.8139 -0.2156 -7.4386 25 6 1.5895 -0.1645 -6.7753 26 6 1.3958 -0.8486 -5.6144 27 6 2.4428 -1.6179 -5.0785 28 6 2.2796 -2.3377 -3.8825 29 6 1.8299 -2.0774 -1.2420 30 1 -0.3634 0.0958 -1.0232 31 1 -0.3634 -0.9340 0.4286 32 1 -0.3633 0.8382 0.5945 33 1 -0.1215 3.1478 -1.1787 34 1 2.0607 -1.4854 2.1454 35 1 0.7552 -2.2878 1.2403 36 1 3.6800 -3.1617 1.2705 37 1 2.3623 -3.9383 2.1821 38 1 2.8799 -5.1004 0.0064 39 1 1.2015 -4.5078 0.1001 40 1 5.4039 -3.6452 -3.7669 41 1 4.7911 -0.9792 -7.4752 42 1 2.9433 0.3361 -8.3580 43 1 0.7843 0.4259 -7.1870 44 1 0.4427 -0.8013 -5.1086 45 1 1.3432 -2.3184 -3.3447 46 1 0.7479 -2.1988 -1.2933 47 1 2.1838 -1.5569 -2.1319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027595004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:23 Heat of formation + Delta-G solvation = 60.784638 kcal Electronic energy + Delta-G solvation = -30042.202869 eV Core-core repulsion = 26191.070918 eV Total energy + Delta-G solvation = -3851.131952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.09992 -39.76273 -37.64915 -36.81880 -35.04546 -33.96277 -32.34975 -31.52747 -30.58850 -29.99442 -28.74849 -26.13919 -25.80442 -24.39379 -23.89441 -23.49349 -22.22423 -21.55402 -20.13707 -19.03308 -18.34961 -17.29130 -17.05730 -16.63625 -16.15725 -15.63623 -15.30898 -14.84732 -14.61581 -14.29320 -14.25697 -14.11572 -13.90354 -13.62278 -13.58900 -13.24536 -13.10802 -12.71334 -12.70927 -12.23733 -12.02981 -11.77594 -11.75479 -11.50158 -11.24989 -11.12456 -10.87972 -10.68638 -10.57802 -10.48419 -10.37187 -10.24466 -9.99535 -9.87279 -9.84440 -9.37933 -8.82554 -8.67794 -8.42277 -8.24632 -6.94146 -5.83077 -3.22459 0.23790 0.66770 1.86993 2.59024 2.99515 3.25045 3.32632 3.41068 3.42563 4.09544 4.20641 4.39166 4.50099 4.55391 4.75986 4.78373 4.90774 5.10173 5.12135 5.18559 5.19014 5.24317 5.34396 5.43834 5.45304 5.56216 5.61208 5.69692 5.76790 5.81994 5.89556 5.97120 5.99627 6.03384 6.10025 6.26463 6.26919 6.29662 6.39479 6.45487 6.59982 6.68199 6.72765 6.78102 6.84296 7.31089 7.48777 7.57846 7.73818 7.86688 8.20806 8.26772 9.13092 9.76461 10.21850 11.22242 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007793 B = 0.005257 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3592.067890 B = 5325.284524 C = 7935.282755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.593 5.593 3 C -0.254 4.254 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.901 3.099 8 H -0.278 1.278 9 H -0.291 1.291 10 H -0.289 1.289 11 C 0.169 3.831 12 H 0.066 0.934 13 C -0.134 4.134 14 C -0.130 4.130 15 C 0.114 3.886 16 N -0.599 5.599 17 C 0.566 3.434 18 O -0.546 6.546 19 C -0.190 4.190 20 C 0.182 3.818 21 N -0.481 5.481 22 C 0.143 3.857 23 C -0.104 4.104 24 C -0.090 4.090 25 C -0.124 4.124 26 C -0.076 4.076 27 C -0.110 4.110 28 C -0.009 4.009 29 C 0.074 3.926 30 H 0.026 0.974 31 H 0.000 1.000 32 H 0.049 0.951 33 H 0.252 0.748 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.166 0.834 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.135 0.865 45 H 0.154 0.846 46 H 0.068 0.932 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 -9.317 -6.935 11.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.314 5.314 3 C -0.383 4.383 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.731 3.269 8 H -0.204 1.204 9 H -0.218 1.218 10 H -0.215 1.215 11 C 0.059 3.941 12 H 0.084 0.916 13 C -0.173 4.173 14 C -0.169 4.169 15 C -0.008 4.008 16 N -0.331 5.331 17 C 0.354 3.646 18 O -0.425 6.425 19 C -0.195 4.195 20 C 0.008 3.992 21 N -0.188 5.188 22 C 0.022 3.978 23 C -0.122 4.122 24 C -0.110 4.110 25 C -0.141 4.141 26 C -0.095 4.095 27 C -0.112 4.112 28 C -0.035 4.035 29 C -0.050 4.050 30 H 0.044 0.956 31 H 0.018 0.982 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.184 0.816 41 H 0.153 0.847 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.153 0.847 45 H 0.171 0.829 46 H 0.086 0.914 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.625 -9.637 -7.449 12.289 hybrid contribution -0.612 1.216 0.735 1.547 sum 1.012 -8.422 -6.714 10.818 Atomic orbital electron populations 1.20828 0.82323 0.95802 0.99372 1.43991 1.01959 0.99967 1.85519 1.19283 0.94750 0.84091 1.40189 0.91147 1.24840 0.97525 0.98025 0.99153 1.70114 1.16869 1.26160 1.41977 0.86236 0.78553 0.84243 0.77859 1.20358 1.21784 1.21549 1.20605 0.96579 0.86084 0.90809 0.91578 1.22099 0.99700 0.95113 1.00418 1.21901 1.01086 0.97026 0.96916 1.21619 1.01202 0.94373 0.83655 1.48160 1.48427 1.18904 1.17593 1.18049 0.78828 0.84814 0.82891 1.90741 1.46081 1.23989 1.81665 1.20876 0.97069 1.03002 0.98525 1.22924 0.95377 0.92373 0.88486 1.68012 1.30509 1.07951 1.12370 1.19008 0.88848 0.95029 0.94951 1.20772 0.99893 0.97049 0.94535 1.20970 0.92829 0.97476 0.99709 1.20931 0.97766 0.99683 0.95770 1.21124 0.98155 0.94776 0.95412 1.18796 0.95700 1.00514 0.96196 1.22351 0.99100 0.89531 0.92515 1.23249 0.97359 0.81388 1.03022 0.95550 0.98200 0.93242 0.93798 0.91556 0.92197 0.91689 0.91143 0.89218 0.91570 0.81644 0.84710 0.85268 0.85279 0.84675 0.82857 0.91365 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.61 7.92 59.85 0.47 4.08 16 2 N -0.59 -13.55 2.82 -173.35 -0.49 -14.04 16 3 C -0.25 -6.60 9.67 -15.06 -0.15 -6.74 16 4 H 0.07 1.83 7.78 -52.48 -0.41 1.42 16 5 C 0.00 0.07 5.05 -17.43 -0.09 -0.02 16 6 N -0.91 -24.80 10.52 55.49 0.58 -24.22 16 7 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 8 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 C 0.17 3.16 2.74 -67.81 -0.19 2.98 16 12 H 0.07 1.34 7.82 -51.93 -0.41 0.93 16 13 C -0.13 -2.11 5.13 -26.69 -0.14 -2.25 16 14 C -0.13 -1.70 6.08 -26.61 -0.16 -1.87 16 15 C 0.11 1.51 6.44 -3.71 -0.02 1.48 16 16 N -0.60 -9.10 2.97 -173.92 -0.52 -9.62 16 17 C 0.57 9.20 7.41 -12.37 -0.09 9.11 16 18 O -0.55 -9.90 16.21 5.32 0.09 -9.81 16 19 C -0.19 -2.94 5.38 -104.83 -0.56 -3.51 16 20 C 0.18 2.77 10.74 -17.10 -0.18 2.59 16 21 N -0.48 -7.57 10.30 -10.67 -0.11 -7.68 16 22 C 0.14 2.16 6.61 -84.79 -0.56 1.60 16 23 C -0.10 -1.31 9.97 -39.48 -0.39 -1.71 16 24 C -0.09 -0.97 9.94 -39.92 -0.40 -1.37 16 25 C -0.12 -1.40 9.96 -39.92 -0.40 -1.80 16 26 C -0.08 -0.99 9.77 -39.47 -0.39 -1.38 16 27 C -0.11 -1.64 5.74 -106.81 -0.61 -2.25 16 28 C -0.01 -0.13 7.23 -38.43 -0.28 -0.41 16 29 C 0.07 1.22 4.12 -3.71 -0.02 1.20 16 30 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 31 H 0.00 -0.01 6.45 -51.93 -0.33 -0.34 16 32 H 0.05 1.23 6.96 -51.93 -0.36 0.87 16 33 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.93 6.71 -51.93 -0.35 0.58 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.21 7.00 -51.93 -0.36 0.84 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.17 2.25 7.96 -52.48 -0.42 1.83 16 41 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 42 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 45 H 0.15 2.11 5.85 -52.49 -0.31 1.81 16 46 H 0.07 1.10 7.42 -51.93 -0.39 0.71 16 47 H 0.09 1.66 4.30 -51.93 -0.22 1.44 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -30.26 372.49 -10.47 -40.73 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.46 Total: 3.06 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -4.15 Total: -0.26 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.53 Total: -55.55 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.26 -10.47 -40.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027595004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.513 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds