Wall clock time and date at job start Sat Apr 11 2020 05:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36930 * 120.00169 * 2 1 4 4 H 1.08004 * 119.99947 * 164.18328 * 3 2 1 5 5 C 1.38813 * 120.00258 * 344.18034 * 3 2 1 6 6 N 1.31615 * 119.99459 * 343.13251 * 5 3 2 7 7 Si 1.86799 * 120.00087 * 163.13097 * 5 3 2 8 8 H 1.48504 * 109.47174 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47421 * 120.00278 * 7 5 3 10 10 H 1.48505 * 109.47057 * 240.00137 * 7 5 3 11 11 C 1.46501 * 119.99462 * 179.72323 * 2 1 3 12 12 H 1.09000 * 109.49646 * 180.21222 * 11 2 1 13 13 C 1.53039 * 109.49874 * 300.27526 * 11 2 1 14 14 C 1.53045 * 109.53947 * 181.31819 * 13 11 2 15 15 C 1.53185 * 109.31233 * 298.63852 * 14 13 11 16 16 N 1.46927 * 108.77922 * 54.63049 * 15 14 13 17 17 C 1.34776 * 120.62877 * 126.41235 * 16 15 14 18 18 O 1.21557 * 120.00241 * 354.51408 * 17 16 15 19 19 C 1.47765 * 120.00066 * 174.51102 * 17 16 15 20 20 C 1.40590 * 120.26777 * 146.54771 * 19 17 16 21 21 N 1.30802 * 121.53822 * 179.76501 * 20 19 17 22 22 C 1.33820 * 121.71681 * 0.50202 * 21 20 19 23 23 C 1.40520 * 120.82272 * 179.74033 * 22 21 20 24 24 C 1.36136 * 119.82006 * 180.02562 * 23 22 21 25 25 C 1.39347 * 121.08642 * 359.97438 * 24 23 22 26 26 C 1.36137 * 120.83167 * 0.06582 * 25 24 23 27 27 C 1.40543 * 119.62066 * 359.91182 * 26 25 24 28 28 C 1.39014 * 120.26287 * 326.83181 * 19 17 16 29 29 C 1.46922 * 118.73989 * 306.39638 * 16 15 14 30 30 H 1.09002 * 109.47231 * 84.64875 * 1 2 3 31 31 H 1.09000 * 109.47360 * 204.64686 * 1 2 3 32 32 H 1.08996 * 109.47058 * 324.65602 * 1 2 3 33 33 H 0.97006 * 119.99547 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.46431 * 301.34045 * 13 11 2 35 35 H 1.09001 * 109.45801 * 61.29794 * 13 11 2 36 36 H 1.08997 * 109.49353 * 58.58667 * 14 13 11 37 37 H 1.08999 * 109.49783 * 178.68197 * 14 13 11 38 38 H 1.08997 * 109.58776 * 174.42332 * 15 14 13 39 39 H 1.09004 * 109.58716 * 294.84312 * 15 14 13 40 40 H 1.08003 * 119.23181 * 0.02562 * 20 19 17 41 41 H 1.08000 * 120.09553 * 0.05324 * 23 22 21 42 42 H 1.07999 * 119.45796 * 180.02562 * 24 23 22 43 43 H 1.07994 * 119.58243 * 180.02562 * 25 24 23 44 44 H 1.08003 * 120.19295 * 179.97438 * 26 25 24 45 45 H 1.07997 * 121.02338 * 359.95093 * 28 19 17 46 46 H 1.09003 * 109.58425 * 293.81871 * 29 16 15 47 47 H 1.08998 * 109.58947 * 173.39382 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1991 1.2035 0.2549 5 6 1.4951 2.3653 -0.3277 6 7 0.3361 2.3236 -0.9500 7 14 2.2593 4.0115 0.1145 8 1 3.5545 3.7865 0.8052 9 1 2.4881 4.7995 -1.1232 10 1 1.3423 4.7573 1.0136 11 6 2.1974 -1.2688 0.0061 12 1 3.2691 -1.0702 0.0090 13 6 1.8229 -2.0688 1.2559 14 6 2.6121 -3.3798 1.2800 15 6 2.2493 -4.2123 0.0463 16 7 2.4700 -3.3970 -1.1560 17 6 3.2447 -3.8514 -2.1610 18 8 3.8483 -4.8991 -2.0371 19 6 3.3601 -3.0758 -3.4134 20 6 4.5655 -3.0737 -4.1371 21 7 4.6937 -2.3998 -5.2508 22 6 3.6892 -1.6715 -5.7520 23 6 3.8493 -0.9504 -6.9474 24 6 2.8139 -0.2156 -7.4386 25 6 1.5895 -0.1645 -6.7753 26 6 1.3958 -0.8486 -5.6144 27 6 2.4428 -1.6179 -5.0785 28 6 2.2796 -2.3377 -3.8825 29 6 1.8299 -2.0774 -1.2420 30 1 -0.3634 0.0958 -1.0232 31 1 -0.3634 -0.9340 0.4286 32 1 -0.3633 0.8382 0.5945 33 1 -0.1215 3.1478 -1.1787 34 1 2.0607 -1.4854 2.1454 35 1 0.7552 -2.2878 1.2403 36 1 3.6800 -3.1617 1.2705 37 1 2.3623 -3.9383 2.1821 38 1 2.8799 -5.1004 0.0064 39 1 1.2015 -4.5078 0.1001 40 1 5.4039 -3.6452 -3.7669 41 1 4.7911 -0.9792 -7.4752 42 1 2.9433 0.3361 -8.3580 43 1 0.7843 0.4259 -7.1870 44 1 0.4427 -0.8013 -5.1086 45 1 1.3432 -2.3184 -3.3447 46 1 0.7479 -2.1988 -1.2933 47 1 2.1838 -1.5569 -2.1319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027595004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:21 Heat of formation + Delta-G solvation = 44.870938 kcal Electronic energy + Delta-G solvation = -30042.892939 eV Core-core repulsion = 26191.070918 eV Total energy + Delta-G solvation = -3851.822021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.24206 -40.96653 -39.04128 -37.89815 -36.68278 -35.11219 -33.78821 -33.03156 -31.67693 -31.07418 -30.29161 -28.03592 -27.01377 -25.59266 -25.21052 -24.84608 -23.39447 -22.75522 -21.54179 -20.32909 -19.47189 -18.79215 -18.38826 -17.98772 -17.38882 -16.98218 -16.72187 -16.25315 -15.83363 -15.57907 -15.43984 -15.32214 -15.24076 -15.01881 -14.86205 -14.41655 -14.37846 -14.25307 -13.97109 -13.72335 -13.47479 -12.95286 -12.84228 -12.78441 -12.73593 -12.49622 -12.45118 -12.21701 -12.15707 -12.08464 -11.87795 -11.57509 -11.53899 -11.44887 -11.16094 -10.63840 -10.54120 -9.92655 -9.72501 -9.29258 -8.80864 -7.83459 -5.23225 -0.83970 -0.41597 0.81426 1.42303 1.44142 1.47406 1.55055 1.79319 2.10774 2.50068 3.01683 3.09360 3.29511 3.31442 3.48327 3.63064 3.64527 3.80011 3.89666 3.93780 4.00632 4.11496 4.20049 4.24057 4.30050 4.34592 4.44244 4.55563 4.63668 4.64839 4.68997 4.75764 4.84474 4.92073 4.98159 5.01447 5.03645 5.09621 5.31602 5.31930 5.38225 5.40429 5.44527 5.47615 5.55333 5.62390 5.77604 5.83034 6.18999 6.31903 6.73267 6.94831 7.16112 7.88100 8.27613 9.19385 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007793 B = 0.005257 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3592.067890 B = 5325.284524 C = 7935.282755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.605 5.605 3 C -0.259 4.259 4 H 0.063 0.937 5 C -0.044 4.044 6 N -0.928 5.928 7 Si 0.954 3.046 8 H -0.274 1.274 9 H -0.294 1.294 10 H -0.290 1.290 11 C 0.165 3.835 12 H 0.045 0.955 13 C -0.124 4.124 14 C -0.120 4.120 15 C 0.110 3.890 16 N -0.595 5.595 17 C 0.569 3.431 18 O -0.567 6.567 19 C -0.205 4.205 20 C 0.171 3.829 21 N -0.494 5.494 22 C 0.119 3.881 23 C -0.118 4.118 24 C -0.077 4.077 25 C -0.118 4.118 26 C -0.095 4.095 27 C -0.128 4.128 28 C -0.008 4.008 29 C 0.090 3.910 30 H 0.008 0.992 31 H 0.034 0.966 32 H 0.018 0.982 33 H 0.248 0.752 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.174 0.826 41 H 0.149 0.851 42 H 0.168 0.832 43 H 0.159 0.841 44 H 0.143 0.857 45 H 0.160 0.840 46 H 0.078 0.922 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.147 -9.554 -7.382 12.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.327 5.327 3 C -0.389 4.389 4 H 0.081 0.919 5 C -0.240 4.240 6 N -0.575 5.575 7 Si 0.783 3.217 8 H -0.199 1.199 9 H -0.222 1.222 10 H -0.217 1.217 11 C 0.057 3.943 12 H 0.063 0.937 13 C -0.163 4.163 14 C -0.158 4.158 15 C -0.011 4.011 16 N -0.327 5.327 17 C 0.357 3.643 18 O -0.448 6.448 19 C -0.210 4.210 20 C -0.003 4.003 21 N -0.201 5.201 22 C -0.002 4.002 23 C -0.137 4.137 24 C -0.097 4.097 25 C -0.135 4.135 26 C -0.114 4.114 27 C -0.130 4.130 28 C -0.034 4.034 29 C -0.034 4.034 30 H 0.026 0.974 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.191 0.809 41 H 0.167 0.833 42 H 0.185 0.815 43 H 0.177 0.823 44 H 0.161 0.839 45 H 0.177 0.823 46 H 0.096 0.904 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.110 -9.905 -7.878 12.705 hybrid contribution -0.442 1.303 0.804 1.594 sum 0.667 -8.603 -7.073 11.157 Atomic orbital electron populations 1.20564 0.82063 0.96189 0.97884 1.44110 1.02268 1.00585 1.85769 1.19469 0.94644 0.85590 1.39190 0.91900 1.25422 0.98255 1.00467 0.99809 1.70231 1.17813 1.26307 1.43114 0.85407 0.77940 0.81104 0.77228 1.19894 1.22160 1.21652 1.20743 0.95006 0.85290 0.93278 0.93708 1.21953 1.00596 0.95784 0.97985 1.21839 0.99996 0.95734 0.98265 1.21831 1.02644 0.94018 0.82616 1.48142 1.47938 1.18415 1.18164 1.18117 0.78441 0.84508 0.83197 1.90721 1.46968 1.24909 1.82177 1.20862 0.97592 1.03905 0.98673 1.23075 0.95738 0.92759 0.88679 1.68015 1.31085 1.08420 1.12611 1.19444 0.88948 0.95664 0.96103 1.21066 1.01333 0.97292 0.93999 1.21426 0.91731 0.96085 1.00409 1.21376 0.98814 0.98571 0.94763 1.21351 0.98155 0.95362 0.96525 1.19022 0.96369 1.01169 0.96436 1.22450 0.99076 0.89227 0.92683 1.22885 0.97748 0.81662 1.01120 0.97413 0.94765 0.96302 0.94273 0.92597 0.91275 0.92639 0.87930 0.89076 0.89333 0.80873 0.83316 0.81460 0.82339 0.83935 0.82294 0.90373 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 7.89 7.92 127.77 1.01 8.90 16 2 N -0.60 -27.69 2.82 -702.35 -1.98 -29.67 16 3 C -0.26 -13.59 9.67 84.03 0.81 -12.77 16 4 H 0.06 3.33 7.78 -2.91 -0.02 3.30 16 5 C -0.04 -2.35 5.05 84.86 0.43 -1.92 16 6 N -0.93 -51.38 10.52 21.65 0.23 -51.16 16 7 Si 0.95 44.00 29.59 68.60 2.03 46.03 16 8 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 9 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 10 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 11 C 0.16 6.11 2.74 45.07 0.12 6.23 16 12 H 0.04 1.83 7.82 -2.39 -0.02 1.82 16 13 C -0.12 -3.69 5.13 30.62 0.16 -3.53 16 14 C -0.12 -2.83 6.08 30.67 0.19 -2.65 16 15 C 0.11 2.67 6.44 86.36 0.56 3.23 16 16 N -0.60 -17.54 2.97 -822.43 -2.44 -19.99 16 17 C 0.57 18.45 7.41 86.76 0.64 19.09 16 18 O -0.57 -20.50 16.21 -3.89 -0.06 -20.57 16 19 C -0.21 -6.50 5.38 -20.00 -0.11 -6.61 16 20 C 0.17 5.37 10.74 85.42 0.92 6.29 16 21 N -0.49 -15.84 10.30 -187.69 -1.93 -17.77 16 22 C 0.12 3.61 6.61 40.27 0.27 3.88 16 23 C -0.12 -2.84 9.97 22.34 0.22 -2.61 16 24 C -0.08 -1.46 9.94 22.05 0.22 -1.24 16 25 C -0.12 -2.39 9.96 22.05 0.22 -2.17 16 26 C -0.10 -2.41 9.77 22.34 0.22 -2.20 16 27 C -0.13 -3.82 5.74 -21.28 -0.12 -3.94 16 28 C -0.01 -0.25 7.23 23.02 0.17 -0.08 16 29 C 0.09 2.92 4.12 86.36 0.36 3.27 16 30 H 0.01 0.36 7.51 -2.39 -0.02 0.35 16 31 H 0.03 1.26 6.45 -2.39 -0.02 1.24 16 32 H 0.02 0.93 6.96 -2.39 -0.02 0.91 16 33 H 0.25 13.42 8.31 -92.70 -0.77 12.65 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 1.95 6.71 -2.39 -0.02 1.93 16 36 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.09 2.26 7.00 -2.39 -0.02 2.25 16 39 H 0.09 1.80 8.14 -2.39 -0.02 1.79 16 40 H 0.17 4.91 7.96 -2.91 -0.02 4.89 16 41 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 42 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 43 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 44 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 45 H 0.16 4.42 5.85 -2.91 -0.02 4.40 16 46 H 0.08 2.40 7.42 -2.39 -0.02 2.38 16 47 H 0.08 2.88 4.30 -2.39 -0.01 2.87 16 Total: -1.00 -66.05 372.49 3.09 -62.95 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.99 Total: 19.00 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 6.28 Total: 11.16 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -6.13 Total: -118.58 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.06 Total: -20.57 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -66.05 3.09 -62.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027595004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.826 kcal (2) G-P(sol) polarization free energy of solvation -66.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds