Wall clock time and date at job start Sat Apr 11 2020 05:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36933 * 120.00099 * 2 1 4 4 H 1.08006 * 119.99694 * 144.64564 * 3 2 1 5 5 C 1.38805 * 120.00181 * 324.64922 * 3 2 1 6 6 N 1.31617 * 120.00169 * 156.42877 * 5 3 2 7 7 Si 1.86799 * 119.99833 * 336.42157 * 5 3 2 8 8 H 1.48508 * 109.46896 * 95.35060 * 7 5 3 9 9 H 1.48503 * 109.47182 * 215.34589 * 7 5 3 10 10 H 1.48499 * 109.47271 * 335.35114 * 7 5 3 11 11 C 1.46502 * 119.99734 * 180.02562 * 2 1 3 12 12 H 1.09003 * 109.49819 * 180.02562 * 11 2 1 13 13 C 1.53037 * 109.49778 * 60.00012 * 11 2 1 14 14 C 1.53044 * 109.53688 * 178.68381 * 13 11 2 15 15 C 1.53186 * 109.31210 * 61.36720 * 14 13 11 16 16 N 1.46924 * 108.77746 * 305.36008 * 15 14 13 17 17 C 1.34780 * 120.63735 * 233.58872 * 16 15 14 18 18 O 1.21563 * 120.00064 * 174.59733 * 17 16 15 19 19 C 1.47757 * 119.99464 * 354.60196 * 17 16 15 20 20 C 1.40606 * 120.26521 * 146.88146 * 19 17 16 21 21 N 1.30801 * 121.53392 * 180.02562 * 20 19 17 22 22 C 1.33817 * 121.72330 * 359.97241 * 21 20 19 23 23 C 1.40518 * 120.82035 * 179.97438 * 22 21 20 24 24 C 1.36133 * 119.81867 * 180.08790 * 23 22 21 25 25 C 1.39347 * 121.08552 * 359.90774 * 24 23 22 26 26 C 1.36142 * 120.83191 * 0.07091 * 25 24 23 27 27 C 1.40538 * 119.61871 * 359.97438 * 26 25 24 28 28 C 1.39011 * 120.27034 * 326.59818 * 19 17 16 29 29 C 1.46933 * 118.73522 * 53.86237 * 16 15 14 30 30 H 1.09007 * 109.47154 * 265.49394 * 1 2 3 31 31 H 1.09001 * 109.46977 * 25.48845 * 1 2 3 32 32 H 1.08998 * 109.47819 * 145.49031 * 1 2 3 33 33 H 0.97005 * 120.00325 * 180.02562 * 6 5 3 34 34 H 1.08997 * 109.46083 * 58.66229 * 13 11 2 35 35 H 1.09000 * 109.45798 * 298.70288 * 13 11 2 36 36 H 1.08999 * 109.49342 * 301.41104 * 14 13 11 37 37 H 1.09003 * 109.52038 * 181.33569 * 14 13 11 38 38 H 1.09008 * 109.58524 * 185.58006 * 15 14 13 39 39 H 1.09001 * 109.59081 * 65.15473 * 15 14 13 40 40 H 1.07998 * 119.22995 * 359.96884 * 20 19 17 41 41 H 1.08006 * 120.09710 * 0.02562 * 23 22 21 42 42 H 1.07997 * 119.45896 * 179.97438 * 24 23 22 43 43 H 1.07997 * 119.58361 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.18541 * 179.97438 * 26 25 24 45 45 H 1.07994 * 121.01467 * 0.02962 * 28 19 17 46 46 H 1.09001 * 109.58376 * 65.92795 * 29 16 15 47 47 H 1.09001 * 109.58731 * 186.34783 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0803 1.2720 0.5412 5 6 1.6476 2.2772 -0.6955 6 7 2.0026 3.4969 -0.3512 7 14 0.4684 2.0146 -2.1202 8 1 -0.9297 2.1393 -1.6350 9 1 0.7218 3.0366 -3.1674 10 1 0.6753 0.6593 -2.6908 11 6 2.1974 -1.2688 -0.0006 12 1 3.2692 -1.0702 0.0000 13 6 1.8281 -2.0712 -1.2503 14 6 2.6174 -3.3823 -1.2684 15 6 2.2494 -4.2123 -0.0347 16 7 2.4652 -3.3948 1.1669 17 6 3.2356 -3.8471 2.1761 18 8 3.4867 -3.1238 3.1203 19 6 3.7749 -5.2221 2.1347 20 6 5.0316 -5.5076 2.6970 21 7 5.5330 -6.7154 2.6738 22 6 4.8766 -7.7391 2.1153 23 6 5.4334 -9.0292 2.1005 24 6 4.7486 -10.0555 1.5252 25 6 3.4968 -9.8511 0.9483 26 6 2.9240 -8.6160 0.9432 27 6 3.6031 -7.5331 1.5274 28 6 3.0415 -6.2450 1.5447 29 6 1.8202 -2.0772 1.2501 30 1 -0.3634 -0.0807 1.0245 31 1 -0.3633 0.9277 -0.4422 32 1 -0.3635 -0.8468 -0.5822 33 1 1.6515 4.2596 -0.8370 34 1 2.0697 -1.4895 -2.1398 35 1 0.7604 -2.2903 -1.2387 36 1 3.6853 -3.1642 -1.2550 37 1 2.3719 -3.9427 -2.1705 38 1 2.8800 -5.1004 0.0096 39 1 1.2018 -4.5080 -0.0923 40 1 5.5964 -4.7108 3.1580 41 1 6.4025 -9.2060 2.5434 42 1 5.1822 -11.0446 1.5167 43 1 2.9746 -10.6828 0.4989 44 1 1.9535 -8.4694 0.4928 45 1 2.0719 -6.0546 1.1089 46 1 0.7383 -2.2023 1.2951 47 1 2.1672 -1.5561 2.1423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027595005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:28 Heat of formation + Delta-G solvation = 65.646497 kcal Electronic energy + Delta-G solvation = -29221.777153 eV Core-core repulsion = 25370.856027 eV Total energy + Delta-G solvation = -3850.921126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.40243 -39.94108 -37.80882 -37.06515 -35.49800 -33.97302 -32.39282 -31.61344 -31.06896 -30.55509 -29.26920 -26.21687 -25.99989 -24.67222 -24.25991 -23.51599 -22.46494 -21.82558 -20.34555 -19.07422 -18.64802 -17.60183 -17.16837 -16.81922 -16.34971 -15.90383 -15.40243 -15.31838 -14.91176 -14.58755 -14.54157 -14.23158 -14.07238 -13.96708 -13.73073 -13.48826 -13.37473 -12.86292 -12.59530 -12.51556 -12.31209 -12.23877 -12.13561 -12.09380 -11.86099 -11.39323 -11.12720 -10.95098 -10.57908 -10.53550 -10.39641 -10.24002 -10.13268 -9.98724 -9.62789 -9.57171 -9.15048 -8.75416 -8.63871 -8.39859 -6.90378 -6.01582 -3.41388 -0.12113 0.32633 1.50017 2.32060 2.83566 3.04476 3.28160 3.43821 3.48041 3.74129 3.91463 4.13814 4.22039 4.40949 4.42244 4.49216 4.60377 4.70609 4.72130 4.84366 4.98073 5.05601 5.10034 5.16747 5.28200 5.32181 5.36999 5.42972 5.50379 5.57509 5.68381 5.71381 5.78183 5.89752 5.93769 5.99795 6.04416 6.10767 6.17319 6.26977 6.31594 6.41284 6.47764 6.50611 6.68070 6.79342 6.83464 7.38492 7.57169 7.99578 8.12705 8.34923 8.93899 9.67689 10.05477 11.13913 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024856 B = 0.002584 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.215459 B =10834.505424 C =11459.984753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.601 5.601 3 C -0.270 4.270 4 H 0.081 0.919 5 C 0.034 3.966 6 N -0.897 5.897 7 Si 0.882 3.118 8 H -0.287 1.287 9 H -0.303 1.303 10 H -0.270 1.270 11 C 0.168 3.832 12 H 0.076 0.924 13 C -0.139 4.139 14 C -0.132 4.132 15 C 0.091 3.909 16 N -0.598 5.598 17 C 0.560 3.440 18 O -0.527 6.527 19 C -0.177 4.177 20 C 0.184 3.816 21 N -0.477 5.477 22 C 0.140 3.860 23 C -0.097 4.097 24 C -0.094 4.094 25 C -0.121 4.121 26 C -0.088 4.088 27 C -0.112 4.112 28 C -0.026 4.026 29 C 0.100 3.900 30 H 0.016 0.984 31 H 0.049 0.951 32 H 0.029 0.971 33 H 0.263 0.737 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.171 0.829 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.153 0.847 46 H 0.064 0.936 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.026 -28.825 -0.108 28.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.324 5.324 3 C -0.398 4.398 4 H 0.099 0.901 5 C -0.167 4.167 6 N -0.538 5.538 7 Si 0.712 3.288 8 H -0.216 1.216 9 H -0.231 1.231 10 H -0.194 1.194 11 C 0.059 3.941 12 H 0.094 0.906 13 C -0.178 4.178 14 C -0.171 4.171 15 C -0.032 4.032 16 N -0.331 5.331 17 C 0.346 3.654 18 O -0.404 6.404 19 C -0.182 4.182 20 C 0.010 3.990 21 N -0.184 5.184 22 C 0.019 3.981 23 C -0.116 4.116 24 C -0.114 4.114 25 C -0.139 4.139 26 C -0.107 4.107 27 C -0.114 4.114 28 C -0.052 4.052 29 C -0.024 4.024 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.188 0.812 41 H 0.155 0.845 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.151 0.849 45 H 0.171 0.829 46 H 0.083 0.917 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.973 -28.470 0.723 28.548 hybrid contribution -1.657 0.197 -1.376 2.163 sum 0.315 -28.274 -0.652 28.283 Atomic orbital electron populations 1.21352 0.84899 0.99308 0.98163 1.44043 1.00494 1.01518 1.86351 1.18814 1.08099 0.86220 1.26680 0.90139 1.25429 0.98204 0.95130 0.97913 1.69889 1.46264 0.97637 1.40047 0.86894 0.80271 0.77602 0.84010 1.21570 1.23100 1.19437 1.20816 0.97189 0.85611 0.90453 0.90557 1.22159 0.99430 0.95173 1.01074 1.21924 1.01414 0.97135 0.96579 1.22312 1.01279 0.94491 0.85090 1.48061 1.48603 1.19309 1.17130 1.18018 0.78629 0.85881 0.82832 1.90825 1.58375 1.57245 1.33965 1.21050 0.98333 0.94992 1.03826 1.23078 0.90957 0.93814 0.91130 1.68065 1.34247 0.99437 1.16668 1.19059 0.90698 0.93723 0.94666 1.20849 1.00670 0.90279 0.99773 1.20987 0.94681 0.99270 0.96500 1.20946 0.95755 0.97385 0.99795 1.21052 0.99597 0.91987 0.98061 1.18799 0.96208 0.94445 1.01976 1.22280 0.99520 0.90916 0.92494 1.22485 0.96466 0.81075 1.02328 0.96554 0.93280 0.95265 0.92667 0.91291 0.92439 0.91377 0.91076 0.89309 0.91096 0.81193 0.84501 0.85133 0.85299 0.84931 0.82924 0.91745 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.27 8.38 59.85 0.50 2.77 16 2 N -0.60 -13.90 2.41 -173.09 -0.42 -14.32 16 3 C -0.27 -7.49 9.84 -15.06 -0.15 -7.64 16 4 H 0.08 2.44 8.06 -52.48 -0.42 2.01 16 5 C 0.03 0.97 5.27 -17.43 -0.09 0.88 16 6 N -0.90 -27.37 13.97 55.49 0.78 -26.60 16 7 Si 0.88 21.90 25.03 -169.99 -4.26 17.64 16 8 H -0.29 -6.95 6.65 56.52 0.38 -6.58 16 9 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 C 0.17 3.19 2.76 -67.59 -0.19 3.00 16 12 H 0.08 1.59 7.89 -51.93 -0.41 1.18 16 13 C -0.14 -2.19 5.10 -26.69 -0.14 -2.32 16 14 C -0.13 -1.56 6.08 -26.61 -0.16 -1.72 16 15 C 0.09 0.95 4.76 -3.72 -0.02 0.94 16 16 N -0.60 -8.42 2.97 -173.64 -0.52 -8.93 16 17 C 0.56 8.42 7.41 -12.37 -0.09 8.33 16 18 O -0.53 -9.95 16.20 5.31 0.09 -9.86 16 19 C -0.18 -2.16 5.37 -104.83 -0.56 -2.72 16 20 C 0.18 2.28 10.74 -17.10 -0.18 2.10 16 21 N -0.48 -5.92 10.30 -10.67 -0.11 -6.03 16 22 C 0.14 1.52 6.61 -84.79 -0.56 0.96 16 23 C -0.10 -0.83 9.97 -39.48 -0.39 -1.22 16 24 C -0.09 -0.60 9.94 -39.93 -0.40 -0.99 16 25 C -0.12 -0.72 9.96 -39.92 -0.40 -1.11 16 26 C -0.09 -0.61 9.77 -39.47 -0.39 -1.00 16 27 C -0.11 -1.07 5.74 -106.81 -0.61 -1.68 16 28 C -0.03 -0.25 7.23 -38.43 -0.28 -0.53 16 29 C 0.10 1.69 5.82 -3.48 -0.02 1.67 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 1.14 3.29 -51.93 -0.17 0.97 16 32 H 0.03 0.53 6.47 -51.93 -0.34 0.19 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.86 6.75 -51.93 -0.35 0.51 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.79 4.31 -51.92 -0.22 0.57 16 39 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 40 H 0.17 2.01 7.96 -52.49 -0.42 1.59 16 41 H 0.14 1.01 8.06 -52.48 -0.42 0.58 16 42 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 43 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 44 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 45 H 0.15 1.13 5.87 -52.49 -0.31 0.82 16 46 H 0.06 1.03 7.53 -51.93 -0.39 0.64 16 47 H 0.10 1.90 7.00 -51.93 -0.36 1.54 16 LS Contribution 368.78 15.07 5.56 5.56 Total: -1.00 -33.66 368.78 -9.36 -43.02 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.36 Total: -0.19 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -4.13 Total: -0.29 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.27 Total: -55.88 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.26 Total: 17.64 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.66 -9.36 -43.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027595005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.665 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds