Wall clock time and date at job start Sat Apr 11 2020 05:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36551 * 125.07455 * 2 1 4 4 C 1.34548 * 109.89733 * 180.02562 * 3 2 1 5 5 C 1.45994 * 107.01019 * 359.97438 * 4 3 2 6 6 C 1.37807 * 125.07491 * 180.02562 * 2 1 3 7 7 C 1.38975 * 133.37005 * 359.94878 * 6 2 1 8 8 C 1.38054 * 120.26991 * 180.02562 * 7 6 2 9 9 C 1.38277 * 120.88097 * 359.72219 * 8 7 6 10 10 C 1.39323 * 120.19679 * 0.55441 * 9 8 7 11 11 C 1.47375 * 120.34007 * 179.72299 * 10 9 8 12 12 O 1.21610 * 120.00231 * 129.03520 * 11 10 9 13 13 N 1.34776 * 120.00145 * 309.04031 * 11 10 9 14 14 C 1.47166 * 120.71164 * 184.13692 * 13 11 10 15 15 C 1.53884 * 108.03506 * 132.74840 * 14 13 11 16 16 H 1.08997 * 112.58105 * 182.22385 * 15 14 13 17 17 C 1.54135 * 107.70752 * 306.32384 * 15 14 13 18 18 C 1.54277 * 104.89216 * 89.41160 * 17 15 14 19 19 C 1.54547 * 104.84848 * 359.80509 * 18 17 15 20 20 H 1.08997 * 112.17874 * 146.40862 * 19 18 17 21 21 C 1.49248 * 120.77129 * 4.20845 * 13 11 10 22 22 N 1.48307 * 104.35442 * 24.70546 * 19 18 17 23 23 C 1.36933 * 128.07862 * 139.07705 * 22 19 18 24 24 H 1.08004 * 120.00123 * 340.40171 * 23 22 19 25 25 C 1.38811 * 120.00400 * 160.39563 * 23 22 19 26 26 N 1.31627 * 119.99797 * 353.32671 * 25 23 22 27 27 Si 1.86803 * 120.00360 * 173.32292 * 25 23 22 28 28 H 1.48506 * 109.46784 * 270.00270 * 27 25 23 29 29 H 1.48493 * 109.46961 * 30.00135 * 27 25 23 30 30 H 1.48496 * 109.47106 * 150.00218 * 27 25 23 31 31 H 1.09001 * 109.46690 * 89.97546 * 1 2 3 32 32 H 1.08995 * 109.47149 * 209.97834 * 1 2 3 33 33 H 1.09004 * 109.46847 * 329.98183 * 1 2 3 34 34 H 1.07994 * 125.05436 * 0.02562 * 3 2 1 35 35 H 1.08003 * 126.49729 * 180.02562 * 4 3 2 36 36 H 1.08001 * 119.86528 * 359.97438 * 7 6 2 37 37 H 1.07998 * 119.55981 * 179.97438 * 8 7 6 38 38 H 1.08000 * 119.90013 * 180.28504 * 9 8 7 39 39 H 1.09002 * 109.75020 * 13.10872 * 14 13 11 40 40 H 1.08999 * 109.74734 * 252.37856 * 14 13 11 41 41 H 1.09001 * 110.50501 * 330.47356 * 17 15 14 42 42 H 1.09001 * 110.27552 * 208.23330 * 17 15 14 43 43 H 1.09006 * 110.36583 * 240.96698 * 18 17 15 44 44 H 1.09000 * 110.36450 * 118.65327 * 18 17 15 45 45 H 1.08994 * 110.51778 * 107.82532 * 21 13 11 46 46 H 1.09002 * 109.74588 * 346.60483 * 21 13 11 47 47 H 0.96997 * 119.99875 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2497 1.1175 0.0000 4 6 3.5482 0.7653 -0.0006 5 6 3.5949 -0.6939 -0.0003 6 6 2.2569 -1.1278 -0.0005 7 6 1.9785 -2.4894 -0.0002 8 6 3.0073 -3.4100 -0.0004 9 6 4.3275 -2.9990 -0.0066 10 6 4.6387 -1.6409 -0.0011 11 6 6.0447 -1.1994 -0.0016 12 8 6.4247 -0.3808 -0.8167 13 7 6.9094 -1.7028 0.9013 14 6 8.2933 -1.2073 0.9741 15 6 8.6228 -0.9295 2.4513 16 1 9.6239 -0.5203 2.5871 17 6 7.5327 0.0083 3.0064 18 6 6.4331 -0.9336 3.5393 19 6 6.9587 -2.3583 3.2520 20 1 6.6523 -3.0718 4.0169 21 6 6.4860 -2.7758 1.8483 22 7 8.4321 -2.2012 3.1902 23 6 9.3923 -3.0330 3.7011 24 1 9.1373 -3.7396 4.4771 25 6 10.6934 -2.9682 3.2217 26 7 10.9768 -2.2033 2.1887 27 14 12.0421 -3.9665 4.0427 28 1 12.6647 -3.1618 5.1245 29 1 11.4601 -5.2049 4.6192 30 1 13.0738 -4.3260 3.0369 31 1 -0.3633 0.0004 -1.0277 32 1 -0.3633 -0.8901 0.5135 33 1 -0.3633 0.8899 0.5141 34 1 1.8826 2.1332 0.0004 35 1 4.3955 1.4350 -0.0003 36 1 0.9532 -2.8287 0.0010 37 1 2.7778 -4.4653 0.0003 38 1 5.1198 -3.7328 -0.0113 39 1 8.3861 -0.2875 0.3966 40 1 8.9754 -1.9607 0.5801 41 1 7.1365 0.6441 2.2146 42 1 7.9350 0.6178 3.8156 43 1 5.4963 -0.7610 3.0094 44 1 6.2961 -0.7886 4.6109 45 1 6.9405 -3.7280 1.5747 46 1 5.4000 -2.8687 1.8379 47 1 11.8860 -2.1578 1.8539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029517521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:14 Heat of formation + Delta-G solvation = 79.408296 kcal Electronic energy + Delta-G solvation = -30522.354662 eV Core-core repulsion = 26672.030293 eV Total energy + Delta-G solvation = -3850.324369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.37998 -39.79432 -37.79253 -36.65595 -33.55110 -32.91409 -32.31311 -31.02462 -29.99319 -29.17868 -29.00674 -26.37072 -26.18695 -24.04806 -23.78764 -22.76777 -21.57458 -20.99840 -19.59389 -19.37219 -18.50404 -17.27571 -16.82760 -16.39593 -15.66897 -15.53661 -15.27630 -15.19997 -14.89195 -14.59893 -14.11566 -13.66720 -13.45012 -13.29894 -12.96103 -12.89402 -12.83822 -12.69237 -12.62674 -12.42228 -11.80327 -11.74832 -11.58822 -11.43193 -11.32842 -11.22347 -10.94162 -10.81759 -10.74600 -10.26831 -9.98619 -9.79866 -9.70264 -9.59709 -9.48402 -9.11282 -8.69362 -8.19961 -7.96103 -7.58588 -6.74156 -5.81994 -3.19305 0.91338 1.59227 2.69109 2.71269 3.25935 3.37361 3.42999 3.44787 3.65219 4.01797 4.44112 4.51336 4.62448 4.76857 4.88557 4.91530 5.06487 5.15318 5.20241 5.31201 5.37260 5.46165 5.58826 5.67726 5.74181 5.78855 5.83769 5.93001 5.98151 6.04060 6.10911 6.30264 6.41235 6.41994 6.49937 6.51642 6.61124 6.67782 6.72686 6.74284 6.81096 6.87931 6.94638 7.08236 7.15567 7.23133 7.38209 7.55676 7.74017 8.16251 8.18963 8.81467 9.08738 9.70421 10.50025 11.31624 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022065 B = 0.003274 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.644764 B = 8550.986780 C = 8809.108435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.492 5.492 3 C 0.045 3.955 4 C -0.186 4.186 5 C -0.067 4.067 6 C 0.091 3.909 7 C -0.119 4.119 8 C -0.103 4.103 9 C -0.117 4.117 10 C -0.063 4.063 11 C 0.551 3.449 12 O -0.552 6.552 13 N -0.585 5.585 14 C 0.113 3.887 15 C 0.172 3.828 16 H 0.111 0.889 17 C -0.136 4.136 18 C -0.121 4.121 19 C 0.133 3.867 20 H 0.076 0.924 21 C 0.091 3.909 22 N -0.584 5.584 23 C -0.229 4.229 24 H 0.074 0.926 25 C 0.000 4.000 26 N -0.910 5.910 27 Si 0.911 3.089 28 H -0.289 1.289 29 H -0.281 1.281 30 H -0.291 1.291 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.168 0.832 35 H 0.149 0.851 36 H 0.118 0.882 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.118 2.491 -2.664 21.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.176 5.176 3 C -0.080 4.080 4 C -0.211 4.211 5 C -0.073 4.073 6 C -0.014 4.014 7 C -0.140 4.140 8 C -0.122 4.122 9 C -0.136 4.136 10 C -0.067 4.067 11 C 0.338 3.662 12 O -0.432 6.432 13 N -0.317 5.317 14 C -0.009 4.009 15 C 0.064 3.936 16 H 0.129 0.871 17 C -0.175 4.175 18 C -0.160 4.160 19 C 0.024 3.976 20 H 0.094 0.906 21 C -0.034 4.034 22 N -0.305 5.305 23 C -0.357 4.357 24 H 0.092 0.908 25 C -0.198 4.198 26 N -0.556 5.556 27 Si 0.742 3.258 28 H -0.216 1.216 29 H -0.207 1.207 30 H -0.217 1.217 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.185 0.815 35 H 0.166 0.834 36 H 0.136 0.864 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.951 2.871 -3.083 21.370 hybrid contribution 0.605 -0.556 0.323 0.883 sum -20.345 2.315 -2.760 20.661 Atomic orbital electron populations 1.21883 0.77376 1.04003 1.02735 1.43704 1.05656 1.04276 1.64007 1.21809 0.90368 0.90992 1.04784 1.21761 0.95952 0.93051 1.10353 1.18903 0.90855 0.93373 1.04138 1.18127 0.89820 0.88334 1.05168 1.20016 0.99388 0.89074 1.05543 1.20677 0.91730 0.98984 1.00820 1.21146 0.96926 0.94201 1.01362 1.19428 0.92695 0.92890 1.01668 1.18157 0.84930 0.81684 0.81414 1.90739 1.78787 1.34914 1.38802 1.48673 1.12410 1.37470 1.33116 1.22448 0.79272 0.99480 0.99735 1.21678 0.97610 0.85830 0.88459 0.87123 1.22566 0.97538 0.97938 0.99467 1.22443 0.97613 0.96527 0.99431 1.21958 0.87083 0.95075 0.93441 0.90610 1.23096 0.98695 0.90092 0.91491 1.45125 0.98744 1.21720 1.64929 1.18961 0.88259 1.14397 1.14061 0.90798 1.24927 0.98135 0.99791 0.96929 1.69856 1.19181 1.41859 1.24662 0.86145 0.81769 0.79615 0.78311 1.21607 1.20652 1.21723 0.91528 0.90276 0.90036 0.81464 0.83352 0.86437 0.85308 0.85193 0.91499 0.89904 0.92874 0.92981 0.92873 0.92839 0.91329 0.90705 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.50 11.02 59.85 0.66 1.16 16 2 N -0.49 -5.32 3.17 -121.82 -0.39 -5.70 16 3 C 0.04 0.50 11.29 -16.76 -0.19 0.31 16 4 C -0.19 -2.74 10.89 -37.78 -0.41 -3.15 16 5 C -0.07 -1.08 6.14 -104.86 -0.64 -1.72 16 6 C 0.09 1.20 6.80 -83.99 -0.57 0.63 16 7 C -0.12 -1.35 9.93 -39.38 -0.39 -1.74 16 8 C -0.10 -1.19 9.99 -39.63 -0.40 -1.59 16 9 C -0.12 -1.66 7.42 -39.16 -0.29 -1.95 16 10 C -0.06 -1.08 4.98 -104.76 -0.52 -1.60 16 11 C 0.55 11.11 7.15 -12.54 -0.09 11.02 16 12 O -0.55 -12.79 16.49 5.27 0.09 -12.71 16 13 N -0.59 -11.84 2.28 -171.09 -0.39 -12.23 16 14 C 0.11 2.59 5.75 -3.22 -0.02 2.57 16 15 C 0.17 3.97 3.07 -65.88 -0.20 3.77 16 16 H 0.11 2.88 6.63 -51.93 -0.34 2.54 16 17 C -0.14 -2.72 6.16 -25.47 -0.16 -2.88 16 18 C -0.12 -2.23 6.19 -25.25 -0.16 -2.38 16 19 C 0.13 2.63 4.27 -65.66 -0.28 2.35 16 20 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 21 C 0.09 1.66 4.81 -2.06 -0.01 1.65 16 22 N -0.58 -13.97 2.79 -152.85 -0.43 -14.39 16 23 C -0.23 -5.99 10.36 -15.06 -0.16 -6.14 16 24 H 0.07 1.89 7.84 -52.48 -0.41 1.48 16 25 C 0.00 0.00 5.43 -17.43 -0.09 -0.09 16 26 N -0.91 -25.16 10.27 55.49 0.57 -24.59 16 27 Si 0.91 21.28 29.56 -169.99 -5.02 16.25 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 29 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 30 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.41 8.09 -51.93 -0.42 -0.02 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.15 2.27 8.06 -52.48 -0.42 1.85 16 36 H 0.12 0.98 8.05 -52.49 -0.42 0.56 16 37 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.13 1.79 7.10 -52.49 -0.37 1.41 16 39 H 0.07 1.55 7.15 -51.93 -0.37 1.18 16 40 H 0.08 2.14 7.53 -51.93 -0.39 1.75 16 41 H 0.05 1.05 7.83 -51.93 -0.41 0.65 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.94 7.86 -51.93 -0.41 0.53 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.07 1.19 5.04 -51.93 -0.26 0.93 16 47 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 371.99 15.07 5.61 5.61 Total: -1.00 -32.12 371.99 -10.64 -42.76 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.75 Total: 4.81 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -3.92 Total: 0.20 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.63 Total: -56.92 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.12 -10.64 -42.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029517521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.167 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds