Wall clock time and date at job start Sat Apr 11 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 120.00509 * 2 1 4 4 O 1.21709 * 120.00511 * 186.35502 * 3 2 1 5 5 C 1.46586 * 119.99526 * 6.35216 * 3 2 1 6 6 C 1.38057 * 126.00499 * 187.62861 * 5 3 2 7 7 C 1.39370 * 107.43712 * 179.84599 * 6 5 3 8 8 C 1.37820 * 107.65435 * 0.42034 * 7 6 5 9 9 C 1.47808 * 125.81846 * 179.70470 * 8 7 6 10 10 C 1.39600 * 120.14323 * 179.77029 * 9 8 7 11 11 C 1.37948 * 119.85226 * 179.76662 * 10 9 8 12 12 C 1.38369 * 120.14555 * 0.48143 * 11 10 9 13 13 C 1.38355 * 120.29393 * 359.77007 * 12 11 10 14 14 C 1.37955 * 120.15227 * 0.02562 * 13 12 11 15 15 N 1.36401 * 108.35234 * 359.73972 * 8 7 6 16 16 H 0.97006 * 125.71534 * 180.02562 * 15 8 7 17 17 C 1.46499 * 119.99921 * 179.97438 * 2 1 3 18 18 H 1.08999 * 110.88837 * 183.88200 * 17 2 1 19 19 C 1.55161 * 111.00581 * 60.00093 * 17 2 1 20 20 C 1.54322 * 102.94210 * 206.42311 * 19 17 2 21 21 N 1.47023 * 107.27248 * 22.19461 * 20 19 17 22 22 C 1.36939 * 125.65036 * 181.02585 * 21 20 19 23 23 H 1.07996 * 120.00233 * 175.09486 * 22 21 20 24 24 C 1.38813 * 119.99937 * 355.08975 * 22 21 20 25 25 N 1.31619 * 119.99719 * 155.97396 * 24 22 21 26 26 Si 1.86803 * 119.99966 * 335.70283 * 24 22 21 27 27 H 1.48494 * 109.47121 * 185.79243 * 26 24 22 28 28 H 1.48497 * 109.47122 * 305.79365 * 26 24 22 29 29 H 1.48501 * 109.46975 * 65.79319 * 26 24 22 30 30 C 1.47427 * 108.70506 * 1.28182 * 21 20 19 31 31 H 1.09002 * 109.46814 * 275.77175 * 1 2 3 32 32 H 1.09002 * 109.47010 * 35.76903 * 1 2 3 33 33 H 1.09004 * 109.47285 * 155.77103 * 1 2 3 34 34 H 1.07995 * 126.27947 * 0.02562 * 6 5 3 35 35 H 1.07999 * 126.16848 * 180.18285 * 7 6 5 36 36 H 1.07998 * 120.07365 * 359.96936 * 10 9 8 37 37 H 1.07997 * 119.92885 * 180.23266 * 11 10 9 38 38 H 1.08003 * 119.85152 * 179.74133 * 12 11 10 39 39 H 1.08005 * 119.92916 * 179.97438 * 13 12 11 40 40 H 1.07995 * 120.08060 * 179.97438 * 14 13 12 41 41 H 1.08999 * 110.71782 * 88.06006 * 19 17 2 42 42 H 1.08997 * 110.87103 * 324.85737 * 19 17 2 43 43 H 1.08999 * 109.88663 * 262.77641 * 20 19 17 44 44 H 1.09005 * 110.01350 * 141.68197 * 20 19 17 45 45 H 0.96997 * 120.00584 * 354.72383 * 25 24 22 46 46 H 1.08999 * 110.36408 * 94.48006 * 30 21 20 47 47 H 1.08993 * 110.37039 * 216.80750 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3504 1.1703 -0.1167 5 6 1.4128 2.4327 0.1405 6 6 1.9522 3.6968 0.0096 7 6 0.9229 4.6135 0.2156 8 6 -0.2263 3.8995 0.4782 9 6 -1.5572 4.4764 0.7623 10 6 -2.6464 3.6387 1.0085 11 6 -3.8848 4.1836 1.2777 12 6 -4.0508 5.5572 1.2942 13 6 -2.9766 6.3931 1.0459 14 6 -1.7319 5.8613 0.7794 15 7 0.0741 2.5698 0.4320 16 1 -0.5507 1.8426 0.5794 17 6 2.1975 -1.2687 0.0006 18 1 3.2717 -1.0973 0.0694 19 6 1.8483 -2.1131 -1.2535 20 6 2.1063 -3.5589 -0.7795 21 7 2.0264 -3.5578 0.6885 22 6 2.2161 -4.6452 1.4989 23 1 2.2140 -4.5257 2.5723 24 6 2.4110 -5.9012 0.9409 25 7 3.0436 -6.8330 1.6220 26 14 1.7688 -6.2712 -0.7738 27 1 1.9784 -7.7087 -1.0814 28 1 0.3187 -5.9576 -0.8377 29 1 2.4988 -5.4413 -1.7656 30 6 1.7020 -2.1935 1.1434 31 1 -0.3633 0.1034 1.0225 32 1 -0.3633 0.8338 -0.6007 33 1 -0.3634 -0.9372 -0.4217 34 1 2.9822 3.9320 -0.2143 35 1 1.0109 5.6893 0.1800 36 1 -2.5191 2.5663 0.9915 37 1 -4.7274 3.5367 1.4721 38 1 -5.0234 5.9787 1.5014 39 1 -3.1130 7.4644 1.0598 40 1 -0.8943 6.5148 0.5853 41 1 2.5043 -1.8571 -2.0855 42 1 0.8033 -1.9795 -1.5329 43 1 3.0981 -3.8816 -1.0965 44 1 1.3500 -4.2271 -1.1914 45 1 3.4403 -6.6207 2.4813 46 1 0.6263 -2.0857 1.2822 47 1 2.2296 -1.9670 2.0698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033705021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:22 Heat of formation + Delta-G solvation = 73.019082 kcal Electronic energy + Delta-G solvation = -28608.069307 eV Core-core repulsion = 24757.467881 eV Total energy + Delta-G solvation = -3850.601426 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.62965 -40.87612 -39.65458 -39.07195 -36.64277 -34.53030 -33.02124 -32.65340 -31.69333 -31.29925 -30.11495 -28.97340 -28.20647 -26.00020 -24.47556 -23.67412 -22.91209 -22.50881 -21.78505 -21.10735 -20.65695 -19.61535 -19.03470 -18.15357 -17.63930 -17.04099 -16.75273 -16.60521 -16.03455 -15.80182 -15.57868 -15.45545 -15.16739 -15.06808 -14.65652 -14.46824 -14.33457 -14.28162 -14.08349 -14.05785 -13.64901 -13.59107 -13.43899 -13.20008 -13.11562 -13.08230 -12.53791 -12.29375 -12.21035 -11.89635 -11.79856 -11.57659 -11.31336 -11.01240 -10.66954 -10.46059 -10.12558 -9.88046 -9.87126 -9.19692 -8.70981 -8.67341 -5.47746 -0.23605 0.48699 0.66952 1.41914 1.49878 1.60667 1.73383 1.77170 1.99897 2.23491 2.55722 2.97635 3.01256 3.28709 3.39207 3.59373 3.63152 3.73558 3.84960 3.91657 3.99177 4.05884 4.21914 4.24177 4.25760 4.28741 4.30182 4.39129 4.52178 4.56839 4.60698 4.64354 4.76453 4.83007 4.86406 4.95563 5.04006 5.09364 5.10440 5.12940 5.27287 5.41992 5.51498 5.52645 5.61847 5.76473 5.82903 6.04075 6.04277 6.17213 6.31097 6.76279 6.91232 7.39411 8.03088 8.81038 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018935 B = 0.002379 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.359882 B =11766.853492 C =12647.952871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.599 5.599 3 C 0.585 3.415 4 O -0.571 6.571 5 C -0.061 4.061 6 C -0.112 4.112 7 C -0.190 4.190 8 C 0.089 3.911 9 C -0.042 4.042 10 C -0.131 4.131 11 C -0.122 4.122 12 C -0.121 4.121 13 C -0.119 4.119 14 C -0.104 4.104 15 N -0.528 5.528 16 H 0.428 0.572 17 C 0.139 3.861 18 H 0.088 0.912 19 C -0.124 4.124 20 C 0.110 3.890 21 N -0.629 5.629 22 C -0.321 4.321 23 H 0.046 0.954 24 C -0.075 4.075 25 N -0.953 5.953 26 Si 1.095 2.905 27 H -0.312 1.312 28 H -0.278 1.278 29 H -0.245 1.245 30 C 0.132 3.868 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.148 0.852 35 H 0.170 0.830 36 H 0.125 0.875 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.032 0.968 44 H 0.035 0.965 45 H 0.248 0.752 46 H 0.050 0.950 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.523 30.680 -5.699 35.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.330 5.330 3 C 0.376 3.624 4 O -0.451 6.451 5 C -0.174 4.174 6 C -0.139 4.139 7 C -0.214 4.214 8 C -0.029 4.029 9 C -0.043 4.043 10 C -0.150 4.150 11 C -0.140 4.140 12 C -0.139 4.139 13 C -0.137 4.137 14 C -0.123 4.123 15 N -0.131 5.131 16 H 0.275 0.725 17 C 0.034 3.966 18 H 0.106 0.894 19 C -0.162 4.162 20 C -0.014 4.014 21 N -0.357 5.357 22 C -0.450 4.450 23 H 0.064 0.936 24 C -0.269 4.269 25 N -0.596 5.596 26 Si 0.921 3.079 27 H -0.240 1.240 28 H -0.204 1.204 29 H -0.170 1.170 30 C 0.005 3.995 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.166 0.834 35 H 0.188 0.812 36 H 0.143 0.857 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.161 0.839 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -17.127 29.218 -6.781 34.540 hybrid contribution 0.432 0.088 1.999 2.047 sum -16.695 29.306 -4.782 34.065 Atomic orbital electron populations 1.22422 0.78243 1.05724 1.03014 1.47595 1.07835 1.04638 1.72937 1.17445 0.86331 0.82681 0.75918 1.90819 1.14866 1.87026 1.52345 1.20071 0.84446 0.94354 1.18551 1.21411 1.00276 0.89990 1.02242 1.21373 0.90371 1.00373 1.09267 1.19519 0.94793 0.82790 1.05780 1.18192 0.89294 0.94290 1.02516 1.21350 0.93055 0.99756 1.00799 1.21352 0.97208 0.96132 0.99272 1.21637 1.00133 0.93550 0.98630 1.21438 0.92144 1.01407 0.98690 1.21395 0.98874 0.93122 0.98906 1.43032 1.08412 1.08014 1.53685 0.72460 1.22056 0.96845 0.81903 0.95754 0.89431 1.22905 1.03910 0.92167 0.97247 1.22063 0.98499 0.96944 0.83913 1.44769 1.83805 1.05170 1.01944 1.19963 1.47506 0.87923 0.89562 0.93608 1.27110 0.98862 0.91907 1.09026 1.71013 1.35714 1.37224 1.15689 0.83657 0.77030 0.74171 0.73025 1.24044 1.20442 1.17023 1.21912 0.98250 0.83952 0.95342 0.90540 0.89021 0.87928 0.83413 0.81242 0.85663 0.83994 0.83746 0.83316 0.83916 0.89037 0.88068 0.94997 0.94767 0.94309 0.93257 0.95310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.82 7.37 127.77 0.94 1.76 16 2 N -0.60 -16.05 2.91 -819.18 -2.38 -18.43 16 3 C 0.58 17.72 7.63 86.42 0.66 18.38 16 4 O -0.57 -21.96 16.29 -4.38 -0.07 -22.03 16 5 C -0.06 -1.48 6.62 40.36 0.27 -1.21 16 6 C -0.11 -2.56 10.61 22.50 0.24 -2.32 16 7 C -0.19 -3.35 10.22 22.44 0.23 -3.12 16 8 C 0.09 1.52 6.93 40.87 0.28 1.81 16 9 C -0.04 -0.60 5.87 -20.09 -0.12 -0.72 16 10 C -0.13 -1.61 9.70 22.53 0.22 -1.39 16 11 C -0.12 -1.22 10.03 22.23 0.22 -1.00 16 12 C -0.12 -1.05 10.04 22.33 0.22 -0.82 16 13 C -0.12 -1.04 10.03 22.23 0.22 -0.82 16 14 C -0.10 -1.18 9.57 22.53 0.22 -0.96 16 15 N -0.53 -9.44 4.97 -172.30 -0.86 -10.30 16 16 H 0.43 5.74 3.99 -92.70 -0.37 5.37 16 17 C 0.14 4.67 3.44 46.46 0.16 4.83 16 18 H 0.09 3.44 7.05 -2.39 -0.02 3.42 16 19 C -0.12 -3.80 6.49 31.78 0.21 -3.59 16 20 C 0.11 4.55 4.58 86.73 0.40 4.95 16 21 N -0.63 -30.54 3.34 -691.54 -2.31 -32.85 16 22 C -0.32 -18.89 10.48 84.03 0.88 -18.01 16 23 H 0.05 2.91 8.06 -2.91 -0.02 2.89 16 24 C -0.08 -4.53 5.47 84.86 0.46 -4.06 16 25 N -0.95 -62.05 13.70 21.65 0.30 -61.75 16 26 Si 1.09 52.62 24.76 68.60 1.70 54.31 16 27 H -0.31 -15.52 7.11 99.48 0.71 -14.82 16 28 H -0.28 -12.33 7.10 99.48 0.71 -11.62 16 29 H -0.25 -10.36 5.21 99.48 0.52 -9.84 16 30 C 0.13 5.17 6.79 86.93 0.59 5.76 16 31 H 0.08 1.07 7.42 -2.39 -0.02 1.05 16 32 H 0.09 1.19 5.70 -2.39 -0.01 1.18 16 33 H 0.10 1.63 6.36 -2.38 -0.02 1.62 16 34 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.17 2.01 7.26 -2.91 -0.02 1.98 16 36 H 0.13 1.17 7.14 -2.91 -0.02 1.14 16 37 H 0.14 0.87 8.06 -2.91 -0.02 0.85 16 38 H 0.14 0.59 8.06 -2.91 -0.02 0.56 16 39 H 0.15 0.58 8.06 -2.91 -0.02 0.56 16 40 H 0.14 1.13 6.98 -2.91 -0.02 1.11 16 41 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.10 2.48 6.48 -2.39 -0.02 2.47 16 43 H 0.03 1.42 6.90 -2.39 -0.02 1.41 16 44 H 0.03 1.41 4.24 -2.38 -0.01 1.40 16 45 H 0.25 16.28 8.73 -92.71 -0.81 15.47 16 46 H 0.05 1.72 6.95 -2.39 -0.02 1.70 16 47 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -79.71 369.01 3.09 -76.62 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.41 Total: 14.98 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 6.30 Total: -0.55 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -5.25 Total: -123.33 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.07 Total: -22.03 kcal Atomic # 14 Polarization: 52.62 SS G_CDS: 1.70 Total: 54.31 kcal Total: -79.71 3.09 -76.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033705021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.640 kcal (2) G-P(sol) polarization free energy of solvation -79.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds