Wall clock time and date at job start Sat Apr 11 2020 05:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47334 * 2 1 4 4 C 1.34780 * 120.00004 * 274.76955 * 3 2 1 5 5 O 1.21537 * 119.99836 * 175.40274 * 4 3 2 6 6 C 1.47952 * 119.99841 * 355.40157 * 4 3 2 7 7 N 1.32201 * 120.15559 * 285.59569 * 6 4 3 8 8 C 1.32026 * 122.67496 * 180.02562 * 7 6 4 9 9 C 1.36692 * 122.03310 * 359.97438 * 8 7 6 10 10 C 1.40527 * 118.84775 * 359.97438 * 9 8 7 11 11 C 1.40314 * 122.22752 * 180.02562 * 10 9 8 12 12 C 1.36209 * 119.45352 * 179.11921 * 11 10 9 13 13 C 1.39385 * 120.99856 * 0.88240 * 12 11 10 14 14 C 1.36253 * 121.08172 * 359.38851 * 13 12 11 15 15 C 1.40093 * 119.53852 * 0.02580 * 14 13 12 16 16 C 1.46497 * 120.00214 * 94.76865 * 3 2 1 17 17 H 1.09006 * 110.91280 * 356.09859 * 16 3 2 18 18 C 1.55155 * 111.00609 * 119.99728 * 16 3 2 19 19 C 1.54321 * 102.94333 * 153.57698 * 18 16 3 20 20 N 1.47032 * 107.27253 * 337.81310 * 19 18 16 21 21 C 1.36935 * 125.64722 * 178.98768 * 20 19 18 22 22 H 1.08000 * 119.99499 * 179.97438 * 21 20 19 23 23 C 1.38805 * 120.00421 * 359.96941 * 21 20 19 24 24 N 1.31622 * 119.99828 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00301 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46848 * 60.00150 * 25 23 21 27 27 H 1.48500 * 109.47488 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47064 * 300.00322 * 25 23 21 29 29 C 1.47428 * 108.69998 * 358.93458 * 20 19 18 30 30 H 1.08995 * 109.47157 * 59.99821 * 1 2 3 31 31 H 1.08995 * 109.47150 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46713 * 300.00060 * 1 2 3 33 33 H 1.09007 * 109.47210 * 240.00099 * 2 1 3 34 34 H 1.08995 * 109.47157 * 120.00179 * 2 1 3 35 35 H 1.07997 * 118.98614 * 180.02562 * 8 7 6 36 36 H 1.08000 * 120.57643 * 179.97438 * 9 8 7 37 37 H 1.08008 * 120.27077 * 359.95298 * 11 10 9 38 38 H 1.08004 * 119.50125 * 180.28920 * 12 11 10 39 39 H 1.08003 * 119.45533 * 179.40784 * 13 12 11 40 40 H 1.07998 * 120.22975 * 179.97438 * 14 13 12 41 41 H 1.08996 * 110.72566 * 271.94382 * 18 16 3 42 42 H 1.09004 * 110.71828 * 35.21566 * 18 16 3 43 43 H 1.09001 * 109.88386 * 97.22646 * 19 18 16 44 44 H 1.08997 * 109.88534 * 218.39398 * 19 18 16 45 45 H 0.96999 * 119.99816 * 180.02562 * 24 23 21 46 46 H 1.08992 * 110.36751 * 265.29203 * 29 20 19 47 47 H 1.08999 * 110.36330 * 142.96666 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1515 2.0489 -1.1632 5 8 2.4763 3.2201 -1.1578 6 6 1.9023 1.3562 -2.4465 7 7 2.7856 0.4926 -2.9175 8 6 2.6142 -0.1527 -4.0565 9 6 1.5035 0.0285 -4.8324 10 6 0.5152 0.9298 -4.4017 11 6 -0.6525 1.1697 -5.1417 12 6 -1.5822 2.0421 -4.6620 13 6 -1.3824 2.7131 -3.4568 14 6 -0.2575 2.5081 -2.7156 15 6 0.7154 1.6090 -3.1712 16 6 2.3620 2.0367 1.2643 17 1 2.1347 1.3903 2.1121 18 6 3.8517 2.4701 1.2791 19 6 3.8557 3.6602 2.2616 20 7 2.4841 4.1871 2.3146 21 6 2.0612 5.2354 3.0875 22 1 1.0280 5.5480 3.0547 23 6 2.9604 5.8962 3.9130 24 7 4.2198 5.5155 3.9525 25 14 2.3834 7.3258 4.9678 26 1 1.3211 6.8597 5.8949 27 1 3.5276 7.8560 5.7519 28 1 1.8428 8.3985 4.0948 29 6 1.6398 3.4007 1.3968 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.3745 -0.8458 -4.3849 36 1 1.3876 -0.5115 -5.7605 37 1 -0.8191 0.6567 -6.0775 38 1 -2.4834 2.2237 -5.2288 39 1 -2.1316 3.4066 -3.1045 40 1 -0.1167 3.0358 -1.7839 41 1 4.4845 1.6631 1.6483 42 1 4.1706 2.7884 0.2866 43 1 4.1615 3.3224 3.2518 44 1 4.5363 4.4332 1.9048 45 1 4.8481 5.9770 4.5297 46 1 1.5755 3.8918 0.4259 47 1 0.6449 3.2636 1.8203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033941406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:05 Heat of formation + Delta-G solvation = 65.676120 kcal Electronic energy + Delta-G solvation = -30035.710137 eV Core-core repulsion = 26184.790296 eV Total energy + Delta-G solvation = -3850.919841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.38000 -39.70936 -37.60675 -36.73597 -35.49540 -33.28909 -32.24590 -31.48584 -30.36752 -29.98904 -28.84807 -27.23070 -25.26567 -24.22353 -23.86739 -23.54294 -22.63071 -21.02789 -19.99047 -19.37615 -17.97410 -17.68097 -17.08487 -16.77082 -16.18045 -15.92528 -15.19715 -14.84469 -14.51505 -14.46471 -14.31722 -14.05077 -13.99153 -13.82496 -13.61544 -13.14658 -13.03647 -12.71132 -12.42820 -12.23467 -12.13493 -12.04821 -11.79898 -11.67579 -11.47008 -11.18825 -10.84758 -10.78174 -10.64574 -10.45682 -10.31460 -10.05840 -9.95302 -9.77736 -9.57136 -9.38011 -9.14120 -8.52942 -8.35089 -8.30353 -6.66269 -5.59407 -2.91756 -0.02681 0.62936 1.57269 2.55627 2.77119 2.99661 3.47612 3.51501 3.53062 3.74989 4.06193 4.25904 4.43099 4.52282 4.60512 4.63021 4.83944 4.86775 4.91332 5.05988 5.10104 5.14619 5.33704 5.43445 5.48188 5.52537 5.53915 5.63781 5.68731 5.71129 5.72974 5.78781 5.86783 5.93751 6.08962 6.11721 6.16679 6.25641 6.31152 6.53434 6.54975 6.64862 6.69921 6.79164 7.26444 7.54327 7.63817 7.67391 7.78367 7.94285 8.26416 8.38475 9.33641 9.94230 10.61476 11.52306 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.003154 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.056967 B = 8875.206280 C = 9555.974094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.103 3.897 3 N -0.587 5.587 4 C 0.572 3.428 5 O -0.495 6.495 6 C 0.152 3.848 7 N -0.460 5.460 8 C 0.080 3.920 9 C -0.149 4.149 10 C -0.024 4.024 11 C -0.116 4.116 12 C -0.093 4.093 13 C -0.116 4.116 14 C -0.079 4.079 15 C -0.083 4.083 16 C 0.130 3.870 17 H 0.095 0.905 18 C -0.153 4.153 19 C 0.185 3.815 20 N -0.602 5.602 21 C -0.223 4.223 22 H 0.076 0.924 23 C -0.010 4.010 24 N -0.923 5.923 25 Si 0.911 3.089 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.122 3.878 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.159 0.841 36 H 0.141 0.859 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.136 0.864 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.045 0.955 44 H 0.043 0.957 45 H 0.251 0.749 46 H 0.053 0.947 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.486 -16.506 -18.438 26.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.020 4.020 3 N -0.319 5.319 4 C 0.356 3.644 5 O -0.368 6.368 6 C -0.001 4.001 7 N -0.170 5.170 8 C -0.065 4.065 9 C -0.168 4.168 10 C -0.029 4.029 11 C -0.134 4.134 12 C -0.112 4.112 13 C -0.134 4.134 14 C -0.099 4.099 15 C -0.085 4.085 16 C 0.027 3.973 17 H 0.113 0.887 18 C -0.192 4.192 19 C 0.060 3.940 20 N -0.328 5.328 21 C -0.351 4.351 22 H 0.094 0.906 23 C -0.206 4.206 24 N -0.571 5.571 25 Si 0.742 3.258 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.005 4.005 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.176 0.824 36 H 0.159 0.841 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.154 0.846 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.390 -15.956 -17.855 25.721 hybrid contribution -0.953 0.766 -0.033 1.223 sum -10.343 -15.190 -17.888 25.646 Atomic orbital electron populations 1.22267 0.95897 1.02139 1.02877 1.21611 0.94328 0.82603 1.03485 1.47872 1.64341 1.13662 1.06072 1.17746 0.78040 0.86129 0.82503 1.90894 1.45158 1.14725 1.86052 1.21560 0.90069 0.93068 0.95407 1.67407 1.29706 1.05656 1.14276 1.22241 0.96761 0.97551 0.89970 1.22054 0.94704 0.98825 1.01256 1.18125 0.95390 0.95853 0.93504 1.20951 0.93087 0.99529 0.99836 1.21041 0.99012 0.95439 0.95751 1.21006 0.97816 0.99746 0.94856 1.21121 0.92790 0.95716 1.00248 1.18678 0.95416 0.99034 0.95418 1.22537 0.96995 0.95003 0.82762 0.88706 1.23230 0.94222 0.99808 1.01910 1.21061 0.86924 0.90925 0.95090 1.44311 1.04904 1.35795 1.47829 1.18993 0.94415 1.05756 1.15969 0.90620 1.24783 0.95714 0.99777 1.00320 1.69961 1.02223 1.42752 1.42127 0.86203 0.77174 0.82311 0.80097 1.21279 1.21666 1.21256 1.22001 0.93201 0.89719 0.95600 0.92645 0.91659 0.91598 0.90574 0.89713 0.82371 0.84140 0.84939 0.85357 0.85139 0.84641 0.92375 0.91193 0.93680 0.93914 0.93818 0.92962 0.95075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 10.21 37.16 0.38 -1.43 16 2 C 0.10 1.23 5.93 -4.04 -0.02 1.21 16 3 N -0.59 -9.31 2.57 -164.73 -0.42 -9.73 16 4 C 0.57 10.00 5.30 -12.28 -0.07 9.93 16 5 O -0.50 -10.71 13.14 5.33 0.07 -10.64 16 6 C 0.15 2.27 4.96 -82.55 -0.41 1.86 16 7 N -0.46 -6.38 9.48 -9.81 -0.09 -6.47 16 8 C 0.08 0.82 11.06 -18.03 -0.20 0.62 16 9 C -0.15 -1.31 9.88 -39.28 -0.39 -1.70 16 10 C -0.02 -0.25 5.75 -106.83 -0.61 -0.86 16 11 C -0.12 -0.95 9.82 -39.53 -0.39 -1.34 16 12 C -0.09 -0.74 9.95 -39.88 -0.40 -1.14 16 13 C -0.12 -1.12 9.95 -39.87 -0.40 -1.52 16 14 C -0.08 -0.98 8.67 -39.60 -0.34 -1.33 16 15 C -0.08 -1.08 5.24 -106.59 -0.56 -1.64 16 16 C 0.13 2.44 3.54 -65.78 -0.23 2.20 16 17 H 0.09 1.63 7.86 -51.93 -0.41 1.23 16 18 C -0.15 -3.21 6.34 -24.90 -0.16 -3.37 16 19 C 0.19 4.83 5.37 -3.06 -0.02 4.81 16 20 N -0.60 -16.36 3.39 -170.07 -0.58 -16.93 16 21 C -0.22 -6.51 10.28 -15.06 -0.15 -6.66 16 22 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 23 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 24 N -0.92 -28.17 10.31 55.49 0.57 -27.60 16 25 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 C 0.12 2.74 6.58 -2.53 -0.02 2.72 16 30 H 0.05 0.62 6.70 -51.93 -0.35 0.27 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.90 6.42 -51.92 -0.33 0.56 16 34 H 0.08 0.89 7.89 -51.93 -0.41 0.48 16 35 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 37 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 38 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 39 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.14 1.88 7.21 -52.49 -0.38 1.50 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.07 1.57 6.41 -51.93 -0.33 1.24 16 43 H 0.05 1.26 7.38 -51.93 -0.38 0.87 16 44 H 0.04 1.25 7.50 -51.93 -0.39 0.86 16 45 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.05 1.27 5.37 -51.93 -0.28 0.99 16 47 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 375.82 15.07 5.66 5.66 Total: -1.00 -35.34 375.82 -10.50 -45.84 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.61 Total: 0.05 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -4.08 Total: 1.99 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.52 Total: -60.74 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.07 Total: -10.64 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.34 -10.50 -45.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033941406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.518 kcal (2) G-P(sol) polarization free energy of solvation -35.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds