Wall clock time and date at job start Sat Apr 11 2020 05:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46992 * 2 1 4 4 C 1.34775 * 120.00195 * 95.70491 * 3 2 1 5 5 O 1.21566 * 120.00076 * 54.54281 * 4 3 2 6 6 C 1.47757 * 120.00020 * 234.54582 * 4 3 2 7 7 C 1.40599 * 120.27228 * 310.45662 * 6 4 3 8 8 N 1.30799 * 121.54381 * 179.97438 * 7 6 4 9 9 C 1.33815 * 121.72193 * 359.97438 * 8 7 6 10 10 C 1.40526 * 120.83540 * 179.97438 * 9 8 7 11 11 C 1.36137 * 119.81617 * 180.02562 * 10 9 8 12 12 C 1.39341 * 121.09171 * 359.97438 * 11 10 9 13 13 C 1.36136 * 120.82817 * 0.02562 * 12 11 10 14 14 C 1.40538 * 119.62257 * 359.97438 * 13 12 11 15 15 C 1.39010 * 120.27177 * 130.43702 * 6 4 3 16 16 C 1.46507 * 119.99925 * 275.70117 * 3 2 1 17 17 H 1.09000 * 110.88533 * 335.67301 * 16 3 2 18 18 C 1.55157 * 111.00104 * 99.54578 * 16 3 2 19 19 C 1.54325 * 102.94269 * 153.57735 * 18 16 3 20 20 N 1.47021 * 107.26852 * 337.80689 * 19 18 16 21 21 C 1.36939 * 125.64610 * 178.98409 * 20 19 18 22 22 H 1.08001 * 119.99513 * 179.97438 * 21 20 19 23 23 C 1.38804 * 120.00105 * 359.97438 * 21 20 19 24 24 N 1.31613 * 120.00044 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99988 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47151 * 89.99394 * 25 23 21 27 27 H 1.48504 * 109.47112 * 209.99578 * 25 23 21 28 28 H 1.48504 * 109.47086 * 329.99365 * 25 23 21 29 29 C 1.47430 * 108.70656 * 358.94053 * 20 19 18 30 30 H 1.08998 * 109.47225 * 299.99732 * 1 2 3 31 31 H 1.09001 * 109.47160 * 60.00372 * 1 2 3 32 32 H 1.09001 * 109.47121 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46843 * 240.00162 * 2 1 3 34 34 H 1.08998 * 109.47445 * 120.00341 * 2 1 3 35 35 H 1.08009 * 119.22852 * 359.95533 * 7 6 4 36 36 H 1.07998 * 120.08978 * 0.03158 * 10 9 8 37 37 H 1.08005 * 119.45245 * 180.28097 * 11 10 9 38 38 H 1.08000 * 119.58082 * 179.97438 * 12 11 10 39 39 H 1.07999 * 120.18674 * 180.02562 * 13 12 11 40 40 H 1.08007 * 121.01467 * 359.97438 * 15 6 4 41 41 H 1.09005 * 110.72230 * 271.94337 * 18 16 3 42 42 H 1.09003 * 110.71790 * 35.21427 * 18 16 3 43 43 H 1.08998 * 109.88397 * 97.22431 * 19 18 16 44 44 H 1.08994 * 109.88278 * 218.39294 * 19 18 16 45 45 H 0.97009 * 120.00372 * 180.02562 * 24 23 21 46 46 H 1.08999 * 110.36386 * 265.29102 * 29 20 19 47 47 H 1.08994 * 110.36898 * 142.96460 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3523 1.9780 1.1614 5 8 3.1598 1.4539 1.9038 6 6 1.7370 3.2691 1.5323 7 6 1.7117 4.3323 0.6127 8 7 1.1731 5.4854 0.9146 9 6 0.6193 5.7115 2.1116 10 6 0.0463 6.9579 2.4163 11 6 -0.5110 7.1655 3.6409 12 6 -0.5252 6.1595 4.6049 13 6 0.0198 4.9388 4.3475 14 6 0.6039 4.6892 3.0938 15 6 1.1780 3.4424 2.7932 16 6 2.1436 2.1139 -1.2625 17 1 2.2591 1.4267 -2.1007 18 6 0.9317 3.0579 -1.4803 19 6 1.5145 4.1662 -2.3822 20 7 2.9727 4.1600 -2.1943 21 6 3.8631 4.9819 -2.8322 22 1 4.9195 4.8987 -2.6239 23 6 3.4078 5.9218 -3.7465 24 7 2.1204 6.0228 -4.0007 25 14 4.6225 7.0425 -4.6172 26 1 5.0730 6.3999 -5.8779 27 1 3.9656 8.3374 -4.9290 28 1 5.7944 7.2813 -3.7370 29 6 3.3175 3.1230 -1.2047 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.1474 4.1938 -0.3658 36 1 0.0480 7.7489 1.6810 37 1 -0.9538 8.1243 3.8673 38 1 -0.9735 6.3508 5.5687 39 1 0.0027 4.1664 5.1021 40 1 1.1830 2.6424 3.5189 41 1 0.1212 2.5343 -1.9875 42 1 0.5903 3.4723 -0.5317 43 1 1.2742 3.9601 -3.4252 44 1 1.1074 5.1342 -2.0901 45 1 1.8022 6.6794 -4.6400 46 1 3.3938 3.5595 -0.2089 47 1 4.2522 2.6336 -1.4780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033975671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:10 Heat of formation + Delta-G solvation = 95.180817 kcal Electronic energy + Delta-G solvation = -30609.659383 eV Core-core repulsion = 26760.018961 eV Total energy + Delta-G solvation = -3849.640421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.66364 -41.00857 -39.50628 -37.81993 -36.64692 -34.51489 -34.36304 -32.27835 -31.30138 -31.19299 -30.78952 -28.77383 -26.65436 -26.15049 -25.17926 -23.74729 -23.10013 -22.76081 -22.04444 -20.80981 -19.16085 -18.83117 -18.78348 -18.38141 -17.31379 -16.86775 -16.58674 -16.41852 -16.26317 -15.74241 -15.42923 -15.22964 -14.98716 -14.66553 -14.48436 -14.39563 -14.27739 -14.12229 -13.90512 -13.67990 -13.42113 -12.95997 -12.92240 -12.75863 -12.70593 -12.63521 -12.42949 -12.32127 -12.18942 -12.04920 -11.90385 -11.71368 -11.59144 -11.37955 -11.34453 -10.72933 -10.37381 -9.76405 -9.44990 -9.26689 -8.96900 -7.86130 -5.24801 -0.74765 -0.36062 0.77683 1.11366 1.46399 1.48350 1.56525 1.81347 1.98223 2.48082 3.04952 3.17125 3.31272 3.44039 3.54839 3.56497 3.66964 3.79926 3.82936 3.89736 3.93574 4.07295 4.19559 4.24051 4.33106 4.37908 4.41270 4.56134 4.57085 4.59623 4.69825 4.73045 4.80418 4.86659 4.93110 4.97215 5.03027 5.06183 5.15740 5.36269 5.37149 5.44100 5.44329 5.52143 5.58958 5.73752 5.79356 5.88280 6.13001 6.21838 6.67522 6.95674 7.05650 7.69078 8.29963 9.22890 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009129 B = 0.004937 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.269311 B = 5669.941411 C = 7838.971163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.121 3.879 3 N -0.652 5.652 4 C 0.614 3.386 5 O -0.521 6.521 6 C -0.227 4.227 7 C 0.116 3.884 8 N -0.512 5.512 9 C 0.111 3.889 10 C -0.130 4.130 11 C -0.077 4.077 12 C -0.117 4.117 13 C -0.085 4.085 14 C -0.131 4.131 15 C 0.000 4.000 16 C 0.158 3.842 17 H 0.125 0.875 18 C -0.165 4.165 19 C 0.184 3.816 20 N -0.610 5.610 21 C -0.251 4.251 22 H 0.081 0.919 23 C -0.051 4.051 24 N -0.941 5.941 25 Si 0.975 3.025 26 H -0.281 1.281 27 H -0.294 1.294 28 H -0.274 1.274 29 C 0.095 3.905 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.210 0.790 36 H 0.126 0.874 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.165 0.835 40 H 0.171 0.829 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.027 0.973 44 H 0.016 0.984 45 H 0.249 0.751 46 H 0.025 0.975 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.142 -8.334 16.365 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.000 4.000 3 N -0.389 5.389 4 C 0.404 3.596 5 O -0.396 6.396 6 C -0.233 4.233 7 C -0.055 4.055 8 N -0.220 5.220 9 C -0.009 4.009 10 C -0.149 4.149 11 C -0.096 4.096 12 C -0.134 4.134 13 C -0.104 4.104 14 C -0.133 4.133 15 C -0.026 4.026 16 C 0.053 3.947 17 H 0.142 0.858 18 C -0.205 4.205 19 C 0.059 3.941 20 N -0.337 5.337 21 C -0.380 4.380 22 H 0.099 0.901 23 C -0.245 4.245 24 N -0.589 5.589 25 Si 0.804 3.196 26 H -0.207 1.207 27 H -0.221 1.221 28 H -0.199 1.199 29 C -0.031 4.031 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.225 0.775 36 H 0.144 0.856 37 H 0.180 0.820 38 H 0.188 0.812 39 H 0.182 0.818 40 H 0.188 0.812 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.045 0.955 44 H 0.034 0.966 45 H 0.058 0.942 46 H 0.042 0.958 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.747 -7.729 16.084 19.873 hybrid contribution 0.692 0.527 -0.596 1.054 sum -8.055 -7.202 15.488 18.885 Atomic orbital electron populations 1.22224 0.94959 1.03283 1.01929 1.21610 0.94671 0.79501 1.04216 1.47237 1.72195 1.15343 1.04086 1.17995 0.78006 0.82968 0.80656 1.90703 1.28043 1.66335 1.54481 1.21442 1.07006 0.97313 0.97549 1.25467 0.91579 0.87027 1.01407 1.68213 1.11113 1.23135 1.19518 1.19676 0.96041 0.95606 0.89619 1.21024 0.99807 0.94989 0.99077 1.21389 0.95684 1.01074 0.91489 1.21392 0.98904 0.92266 1.00879 1.21407 0.95717 0.99253 0.93999 1.19014 1.02983 0.94099 0.97219 1.22038 0.90328 0.96665 0.93548 1.22126 0.93664 0.92979 0.85884 0.85767 1.23859 0.98764 0.97466 1.00394 1.20977 0.82368 0.94627 0.96109 1.44658 1.03362 1.39110 1.46564 1.19359 0.89353 1.11606 1.17658 0.90111 1.25568 0.97805 1.00694 1.00431 1.70155 1.13186 1.37812 1.37742 0.85139 0.78035 0.77884 0.78589 1.20706 1.22080 1.19874 1.22418 0.97827 0.90043 0.92786 0.93744 0.92411 0.89133 0.88639 0.90220 0.77463 0.85643 0.81970 0.81220 0.81780 0.81195 0.88902 0.90924 0.95477 0.96610 0.94182 0.95844 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 10.23 71.98 0.74 -2.24 16 2 C 0.12 2.55 6.38 86.38 0.55 3.10 16 3 N -0.65 -19.26 2.52 -793.58 -2.00 -21.27 16 4 C 0.61 20.80 5.06 86.76 0.44 21.24 16 5 O -0.52 -19.39 17.49 -3.92 -0.07 -19.46 16 6 C -0.23 -7.95 5.25 -20.00 -0.11 -8.06 16 7 C 0.12 4.81 6.10 85.42 0.52 5.33 16 8 N -0.51 -22.00 10.30 -187.69 -1.93 -23.93 16 9 C 0.11 3.91 6.61 40.27 0.27 4.17 16 10 C -0.13 -3.78 9.97 22.34 0.22 -3.55 16 11 C -0.08 -1.48 9.94 22.05 0.22 -1.26 16 12 C -0.12 -1.82 9.96 22.05 0.22 -1.60 16 13 C -0.09 -1.61 9.77 22.34 0.22 -1.39 16 14 C -0.13 -3.72 5.74 -21.29 -0.12 -3.85 16 15 C 0.00 0.01 9.62 23.01 0.22 0.23 16 16 C 0.16 5.31 3.51 46.38 0.16 5.47 16 17 H 0.12 3.70 7.97 -2.39 -0.02 3.68 16 18 C -0.17 -6.11 5.88 31.78 0.19 -5.92 16 19 C 0.18 9.02 4.48 86.73 0.39 9.40 16 20 N -0.61 -31.15 2.97 -693.78 -2.06 -33.20 16 21 C -0.25 -14.16 10.28 84.03 0.86 -13.29 16 22 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 23 C -0.05 -2.89 5.49 84.86 0.47 -2.43 16 24 N -0.94 -56.30 10.31 21.65 0.22 -56.07 16 25 Si 0.98 46.19 29.55 68.60 2.03 48.22 16 26 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 27 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 28 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 29 C 0.10 4.02 5.70 86.85 0.50 4.52 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 1.12 7.95 -2.39 -0.02 1.10 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.10 1.67 8.00 -2.38 -0.02 1.65 16 34 H 0.08 1.66 7.73 -2.39 -0.02 1.64 16 35 H 0.21 9.30 0.95 -3.60 0.00 9.30 16 36 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 37 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 39 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.17 3.68 8.06 -2.91 -0.02 3.66 16 41 H 0.09 2.94 7.95 -2.38 -0.02 2.92 16 42 H 0.07 2.82 4.11 -2.40 -0.01 2.81 16 43 H 0.03 1.45 7.38 -2.39 -0.02 1.43 16 44 H 0.02 0.90 7.51 -2.39 -0.02 0.88 16 45 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 46 H 0.02 1.10 4.17 -2.39 -0.01 1.09 16 47 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -75.01 369.00 3.14 -71.88 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 1.00 Total: 23.96 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 5.95 Total: 9.88 kcal Atomic # 7 Polarization: -128.70 SS G_CDS: -5.77 Total: -134.48 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.07 Total: -19.46 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -75.01 3.14 -71.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033975671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.059 kcal (2) G-P(sol) polarization free energy of solvation -75.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds