Wall clock time and date at job start Sat Apr 11 2020 05:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47324 * 2 1 4 4 C 1.34771 * 120.00245 * 249.58102 * 3 2 1 5 5 O 1.21565 * 120.00280 * 178.78121 * 4 3 2 6 6 C 1.47771 * 120.00083 * 358.78532 * 4 3 2 7 7 C 1.40654 * 119.69959 * 35.78978 * 6 4 3 8 8 C 1.35841 * 120.87846 * 179.70968 * 7 6 4 9 9 C 1.40400 * 119.84339 * 0.55950 * 8 7 6 10 10 C 1.40633 * 121.97467 * 179.71998 * 9 8 7 11 11 C 1.36214 * 118.73492 * 180.02562 * 10 9 8 12 12 N 1.32597 * 121.89727 * 359.95477 * 11 10 9 13 13 C 1.31233 * 122.74497 * 0.02562 * 12 11 10 14 14 C 1.40553 * 119.88828 * 0.02562 * 13 12 11 15 15 C 1.38572 * 119.69872 * 216.06574 * 6 4 3 16 16 C 1.46506 * 119.99673 * 69.58375 * 3 2 1 17 17 H 1.09000 * 110.88556 * 349.28407 * 16 3 2 18 18 C 1.55156 * 111.00360 * 113.17037 * 16 3 2 19 19 C 1.54320 * 102.94157 * 82.57226 * 18 16 3 20 20 N 1.47019 * 107.27567 * 22.18960 * 19 18 16 21 21 C 1.36939 * 125.65117 * 181.02432 * 20 19 18 22 22 H 1.08000 * 120.00265 * 180.02562 * 21 20 19 23 23 C 1.38806 * 119.99800 * 359.74800 * 21 20 19 24 24 N 1.31625 * 120.00101 * 0.27774 * 23 21 20 25 25 Si 1.86793 * 120.00097 * 180.27479 * 23 21 20 26 26 H 1.48498 * 109.47139 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47179 * 120.00250 * 25 23 21 28 28 H 1.48500 * 109.47658 * 240.00119 * 25 23 21 29 29 C 1.47430 * 108.70086 * 1.29069 * 20 19 18 30 30 H 1.09005 * 109.47257 * 299.99537 * 1 2 3 31 31 H 1.08999 * 109.47304 * 60.00013 * 1 2 3 32 32 H 1.09002 * 109.47033 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47194 * 239.99680 * 2 1 3 34 34 H 1.09005 * 109.46995 * 120.00824 * 2 1 3 35 35 H 1.08000 * 119.55699 * 359.97438 * 7 6 4 36 36 H 1.08001 * 120.07913 * 180.28291 * 8 7 6 37 37 H 1.08005 * 120.63000 * 0.02562 * 10 9 8 38 38 H 1.08006 * 119.04968 * 179.97438 * 11 10 9 39 39 H 1.08001 * 120.05772 * 179.97438 * 13 12 11 40 40 H 1.07998 * 120.34434 * 359.97140 * 15 6 4 41 41 H 1.09000 * 110.72056 * 324.20291 * 18 16 3 42 42 H 1.09005 * 110.86879 * 200.99952 * 18 16 3 43 43 H 1.09000 * 109.87886 * 262.76752 * 19 18 16 44 44 H 1.09006 * 109.88227 * 141.61190 * 19 18 16 45 45 H 0.97002 * 119.99700 * 179.97438 * 24 23 21 46 46 H 1.08989 * 110.36701 * 94.48338 * 29 20 19 47 47 H 1.09003 * 110.36405 * 216.80848 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.6269 1.8808 -1.0938 5 8 3.0124 3.0337 -1.1017 6 6 2.8256 1.0272 -2.2836 7 6 1.8464 0.0798 -2.6329 8 6 2.0017 -0.7131 -3.7249 9 6 3.1581 -0.5985 -4.5128 10 6 3.3677 -1.4004 -5.6489 11 6 4.5142 -1.2340 -6.3654 12 7 5.4316 -0.3404 -6.0220 13 6 5.3041 0.4418 -4.9761 14 6 4.1576 0.3497 -4.1682 15 6 3.9775 1.1634 -3.0416 16 6 1.8452 2.2193 1.1891 17 1 1.1786 1.7419 1.9073 18 6 3.2144 2.5536 1.8380 19 6 3.7126 3.7481 0.9976 20 7 2.5331 4.3648 0.3731 21 6 2.5487 5.4444 -0.4692 22 1 1.6238 5.8243 -0.8773 23 6 3.7527 6.0540 -0.7939 24 7 4.8800 5.5910 -0.2966 25 14 3.7732 7.5313 -1.9368 26 1 2.3852 7.8525 -2.3556 27 1 4.3583 8.6976 -1.2278 28 1 4.5925 7.2188 -3.1353 29 6 1.3302 3.6324 0.8090 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5140 0.8900 35 1 0.9573 -0.0155 -2.0273 36 1 1.2396 -1.4332 -3.9838 37 1 2.6336 -2.1342 -5.9475 38 1 4.6805 -1.8475 -7.2387 39 1 6.0791 1.1547 -4.7360 40 1 4.7285 1.8894 -2.7673 41 1 3.8984 1.7093 1.7518 42 1 3.0893 2.8419 2.8817 43 1 4.3998 3.3983 0.2271 44 1 4.2121 4.4719 1.6417 45 1 5.7214 6.0168 -0.5239 46 1 0.8816 4.1205 1.6741 47 1 0.6099 3.5665 -0.0065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034014245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:34 Heat of formation + Delta-G solvation = 120.742176 kcal Electronic energy + Delta-G solvation = -30631.565026 eV Core-core repulsion = 26783.033028 eV Total energy + Delta-G solvation = -3848.531998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.97976 -39.84294 -37.43553 -35.84783 -35.39317 -32.95920 -32.29956 -31.08558 -30.19571 -29.56559 -28.79274 -27.19396 -24.93105 -24.08316 -23.95902 -22.85417 -22.37353 -21.15592 -19.82737 -18.87179 -17.98682 -17.22889 -16.76970 -16.41489 -15.97089 -15.43399 -15.20116 -14.70929 -14.61511 -14.34992 -14.21834 -13.79759 -13.59153 -13.55231 -13.47708 -13.29992 -12.91544 -12.31299 -12.27971 -11.88631 -11.77558 -11.65388 -11.63633 -11.48903 -11.24581 -11.01468 -10.70388 -10.69625 -10.62778 -10.24352 -9.97295 -9.90462 -9.66267 -9.57372 -9.40081 -9.03346 -8.64145 -8.38706 -8.05212 -7.80966 -6.22801 -5.39360 -2.63984 0.26906 0.74548 1.84224 2.78407 3.42767 3.54889 3.60341 3.62037 3.70994 4.10191 4.33831 4.47869 4.64853 4.70542 4.74566 4.80844 4.92690 5.04411 5.13525 5.16889 5.19076 5.40985 5.45397 5.52113 5.57502 5.67766 5.70356 5.72332 5.73909 5.78182 5.89051 5.92990 6.01048 6.06422 6.14617 6.27546 6.29396 6.39906 6.54746 6.57290 6.62468 6.65746 6.73185 6.79763 7.30684 7.79887 7.89285 7.91798 8.01699 8.14303 8.57264 9.12503 9.53405 10.15373 10.81425 11.73984 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010196 B = 0.004711 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.565178 B = 5941.543363 C = 7917.212352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.085 3.915 3 N -0.606 5.606 4 C 0.493 3.507 5 O -0.387 6.387 6 C -0.113 4.113 7 C -0.086 4.086 8 C -0.129 4.129 9 C -0.015 4.015 10 C -0.162 4.162 11 C 0.076 3.924 12 N -0.496 5.496 13 C 0.158 3.842 14 C -0.117 4.117 15 C -0.029 4.029 16 C 0.135 3.865 17 H 0.081 0.919 18 C -0.161 4.161 19 C 0.192 3.808 20 N -0.567 5.567 21 C -0.189 4.189 22 H 0.066 0.934 23 C -0.007 4.007 24 N -0.921 5.921 25 Si 0.897 3.103 26 H -0.285 1.285 27 H -0.296 1.296 28 H -0.295 1.295 29 C 0.130 3.870 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.150 0.850 39 H 0.167 0.833 40 H 0.147 0.853 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.029 0.971 45 H 0.243 0.757 46 H 0.022 0.978 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.599 -18.826 -3.249 20.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.038 4.038 3 N -0.344 5.344 4 C 0.277 3.723 5 O -0.251 6.251 6 C -0.116 4.116 7 C -0.105 4.105 8 C -0.147 4.147 9 C -0.021 4.021 10 C -0.182 4.182 11 C -0.067 4.067 12 N -0.204 5.204 13 C -0.013 4.013 14 C -0.119 4.119 15 C -0.050 4.050 16 C 0.031 3.969 17 H 0.099 0.901 18 C -0.200 4.200 19 C 0.068 3.932 20 N -0.292 5.292 21 C -0.318 4.318 22 H 0.084 0.916 23 C -0.202 4.202 24 N -0.571 5.571 25 Si 0.730 3.270 26 H -0.211 1.211 27 H -0.224 1.224 28 H -0.223 1.223 29 C 0.003 3.997 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.167 0.833 39 H 0.184 0.816 40 H 0.165 0.835 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.047 0.953 45 H 0.054 0.946 46 H 0.040 0.960 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.513 -18.022 -3.990 19.264 hybrid contribution -0.876 0.457 -0.180 1.004 sum -6.389 -17.565 -4.170 19.151 Atomic orbital electron populations 1.22256 0.96385 1.01744 1.02820 1.22034 0.94091 0.84333 1.03358 1.47674 1.60569 1.12047 1.14083 1.18592 0.82218 0.88673 0.82817 1.91688 1.41828 1.12745 1.78862 1.20411 0.95529 0.97530 0.98160 1.21615 0.99392 0.93510 0.96005 1.20811 0.97060 1.01448 0.95424 1.18240 0.94214 0.94678 0.94936 1.21862 0.99565 1.00811 0.95963 1.22178 0.90054 0.95457 0.99042 1.67466 1.30844 1.05519 1.16587 1.23354 0.94713 0.94673 0.88575 1.19016 0.96619 0.98410 0.97885 1.21470 0.96814 0.95510 0.91175 1.22272 0.97096 0.91866 0.85699 0.90101 1.23386 0.96343 1.00851 0.99466 1.21092 0.89713 0.89321 0.93060 1.44129 0.99575 1.32753 1.52735 1.18817 0.92580 1.01629 1.18735 0.91586 1.24529 0.95499 0.99299 1.00829 1.69960 0.96637 1.42055 1.48459 0.86239 0.76881 0.83069 0.80807 1.21066 1.22365 1.22273 1.21795 0.91688 0.89501 0.96736 0.91864 0.92191 0.91886 0.88623 0.91829 0.83781 0.85106 0.84680 0.83260 0.81638 0.83548 0.92518 0.92070 0.92429 0.95255 0.94639 0.96034 0.94817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 9.27 37.16 0.34 -1.25 16 2 C 0.09 0.94 5.59 -4.05 -0.02 0.92 16 3 N -0.61 -9.51 2.63 -164.67 -0.43 -9.95 16 4 C 0.49 9.30 6.87 -12.37 -0.08 9.21 16 5 O -0.39 -9.35 8.71 5.31 0.05 -9.31 16 6 C -0.11 -1.78 5.39 -104.97 -0.57 -2.35 16 7 C -0.09 -1.06 7.22 -39.53 -0.29 -1.35 16 8 C -0.13 -1.42 9.77 -39.63 -0.39 -1.81 16 9 C -0.02 -0.19 5.75 -106.74 -0.61 -0.81 16 10 C -0.16 -1.70 9.87 -39.41 -0.39 -2.09 16 11 C 0.08 0.84 11.07 -17.95 -0.20 0.65 16 12 N -0.50 -6.69 10.30 -13.12 -0.14 -6.83 16 13 C 0.16 2.12 11.05 -16.94 -0.19 1.94 16 14 C -0.12 -1.65 5.74 -106.87 -0.61 -2.27 16 15 C -0.03 -0.46 9.38 -38.75 -0.36 -0.82 16 16 C 0.13 2.28 3.54 -65.66 -0.23 2.04 16 17 H 0.08 1.11 7.39 -51.93 -0.38 0.72 16 18 C -0.16 -3.03 6.53 -24.90 -0.16 -3.19 16 19 C 0.19 4.79 4.21 -3.07 -0.01 4.77 16 20 N -0.57 -14.62 1.73 -169.93 -0.29 -14.92 16 21 C -0.19 -5.44 8.79 -15.06 -0.13 -5.58 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 24 N -0.92 -28.00 10.31 55.49 0.57 -27.43 16 25 Si 0.90 23.41 29.55 -169.99 -5.02 18.39 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 27 H -0.30 -7.75 7.11 56.52 0.40 -7.34 16 28 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 29 C 0.13 2.72 6.23 -2.41 -0.01 2.71 16 30 H 0.06 0.60 7.44 -51.93 -0.39 0.22 16 31 H 0.06 0.60 7.01 -51.93 -0.36 0.23 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 1.01 3.93 -51.93 -0.20 0.81 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.14 1.52 3.79 -52.49 -0.20 1.32 16 36 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 38 H 0.15 1.22 8.06 -52.48 -0.42 0.80 16 39 H 0.17 1.92 8.06 -52.49 -0.42 1.50 16 40 H 0.15 2.50 7.99 -52.49 -0.42 2.08 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 1.61 5.76 -51.93 -0.30 1.31 16 44 H 0.03 0.82 7.50 -51.93 -0.39 0.44 16 45 H 0.24 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -34.72 364.34 -10.21 -44.94 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.42 Total: -0.84 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -4.02 Total: 0.45 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.29 Total: -59.12 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.05 Total: -9.31 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -5.02 Total: 18.39 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.72 -10.21 -44.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034014245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.680 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds