Wall clock time and date at job start Sat Apr 11 2020 05:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47126 * 2 1 4 4 C 1.34783 * 119.99687 * 251.10555 * 3 2 1 5 5 O 1.21563 * 119.99800 * 184.25023 * 4 3 2 6 6 C 1.47776 * 120.00061 * 4.24230 * 4 3 2 7 7 C 1.40649 * 119.69377 * 28.48143 * 6 4 3 8 8 C 1.35844 * 120.87236 * 179.70375 * 7 6 4 9 9 C 1.40397 * 119.84387 * 0.55841 * 8 7 6 10 10 C 1.40644 * 121.96950 * 179.71614 * 9 8 7 11 11 C 1.36215 * 118.72681 * 180.02562 * 10 9 8 12 12 N 1.32591 * 121.90318 * 359.96364 * 11 10 9 13 13 C 1.31239 * 122.74089 * 0.02562 * 12 11 10 14 14 C 1.40545 * 119.89127 * 0.02562 * 13 12 11 15 15 C 1.38561 * 119.70154 * 208.74760 * 6 4 3 16 16 C 1.46496 * 120.00637 * 71.10692 * 3 2 1 17 17 H 1.09006 * 110.77846 * 17.60978 * 16 3 2 18 18 C 1.55152 * 110.72348 * 254.36865 * 16 3 2 19 19 C 1.54909 * 101.58094 * 277.13899 * 18 16 3 20 20 N 1.47424 * 104.82931 * 322.98332 * 19 18 16 21 21 C 1.36938 * 125.64732 * 204.16221 * 20 19 18 22 22 H 1.08006 * 119.99767 * 179.97438 * 21 20 19 23 23 C 1.38811 * 120.00032 * 359.96828 * 21 20 19 24 24 N 1.31618 * 120.00248 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99744 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47284 * 90.00070 * 25 23 21 27 27 H 1.48498 * 109.47040 * 209.99717 * 25 23 21 28 28 H 1.48498 * 109.47604 * 330.00013 * 25 23 21 29 29 C 1.47026 * 108.70394 * 24.13500 * 20 19 18 30 30 H 1.08995 * 109.46675 * 60.00612 * 1 2 3 31 31 H 1.08996 * 109.47016 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46853 * 300.00639 * 1 2 3 33 33 H 1.09000 * 109.47242 * 239.99005 * 2 1 3 34 34 H 1.09003 * 109.46954 * 119.99544 * 2 1 3 35 35 H 1.07999 * 119.56595 * 359.97287 * 7 6 4 36 36 H 1.08005 * 120.08172 * 180.28426 * 8 7 6 37 37 H 1.07996 * 120.63629 * 0.02562 * 10 9 8 38 38 H 1.08002 * 119.04638 * 179.97438 * 11 10 9 39 39 H 1.07998 * 120.05362 * 180.02562 * 13 12 11 40 40 H 1.08005 * 120.34600 * 0.02927 * 15 6 4 41 41 H 1.08992 * 111.00752 * 159.05647 * 18 16 3 42 42 H 1.09004 * 111.03237 * 35.22133 * 18 16 3 43 43 H 1.09001 * 110.36335 * 204.15192 * 19 18 16 44 44 H 1.08999 * 110.46521 * 81.87312 * 19 18 16 45 45 H 0.96995 * 120.00003 * 179.97438 * 24 23 21 46 46 H 1.08999 * 109.88417 * 118.35395 * 29 20 19 47 47 H 1.08995 * 109.87814 * 239.51915 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5993 1.8905 -1.1044 5 8 3.0738 3.0095 -1.0805 6 6 2.6598 1.0886 -2.3442 7 6 1.6666 0.1262 -2.6006 8 6 1.6955 -0.6200 -3.7354 9 6 2.7341 -0.4411 -4.6629 10 6 2.8111 -1.1932 -5.8489 11 6 3.8480 -0.9656 -6.7024 12 7 4.7806 -0.0586 -6.4458 13 6 4.7734 0.6795 -5.3607 14 6 3.7468 0.5226 -4.4137 15 6 3.6973 1.2877 -3.2407 16 6 1.8753 2.2088 1.2003 17 1 1.6838 1.5894 2.0766 18 6 0.7476 3.2578 1.0126 19 6 1.4914 4.3801 0.2464 20 7 2.8448 4.4028 0.8304 21 6 3.6961 5.4754 0.8305 22 1 4.6714 5.3907 1.2868 23 6 3.3057 6.6714 0.2440 24 7 2.1175 6.7744 -0.3127 25 14 4.4668 8.1347 0.2448 26 1 5.3102 8.0981 -0.9770 27 1 3.6778 9.3926 0.2641 28 1 5.3355 8.0768 1.4478 29 6 3.1289 3.0832 1.4133 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.8681 -0.0185 -1.8879 36 1 0.9238 -1.3523 -3.9215 37 1 2.0624 -1.9368 -6.0786 38 1 3.9124 -1.5404 -7.6144 39 1 5.5551 1.4061 -5.1956 40 1 4.4603 2.0245 -3.0374 41 1 0.3838 3.6168 1.9752 42 1 -0.0688 2.8519 0.4153 43 1 0.9953 5.3382 0.4014 44 1 1.5410 4.1471 -0.8173 45 1 1.8446 7.6102 -0.7222 46 1 3.9849 2.6326 0.9110 47 1 3.3332 3.1851 2.4790 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034014251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:37 Heat of formation + Delta-G solvation = 107.288417 kcal Electronic energy + Delta-G solvation = -30222.401215 eV Core-core repulsion = 26373.285819 eV Total energy + Delta-G solvation = -3849.115397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.14457 -40.03827 -37.50491 -36.20012 -35.47023 -33.08912 -32.40281 -31.14878 -30.38017 -29.68689 -28.90366 -27.15521 -24.97686 -24.19656 -24.05463 -23.03707 -22.46161 -21.09563 -19.96454 -19.10117 -18.13594 -17.23856 -16.91405 -16.58910 -15.97228 -15.47072 -15.38440 -15.06097 -14.64523 -14.38910 -14.29076 -13.87778 -13.74078 -13.63713 -13.48573 -13.19085 -13.04139 -12.70130 -12.39847 -11.96318 -11.86453 -11.81006 -11.54529 -11.42768 -11.31817 -11.07932 -10.85108 -10.72035 -10.68397 -10.33920 -9.97107 -9.93903 -9.69377 -9.64269 -9.38188 -9.14581 -8.93237 -8.47341 -8.20221 -7.97367 -6.48683 -5.39760 -2.75828 0.14229 0.61712 1.71541 2.62105 3.26252 3.51427 3.52985 3.57459 3.58982 3.97227 4.23523 4.36873 4.53008 4.55336 4.68764 4.69796 4.80944 4.93135 5.00464 5.08301 5.10270 5.30869 5.40343 5.45111 5.55770 5.57213 5.60117 5.63162 5.70158 5.72241 5.77708 5.82528 5.86797 6.03133 6.10402 6.19020 6.23425 6.34993 6.45698 6.54369 6.60354 6.65168 6.76217 6.86065 7.23712 7.78036 7.79221 7.82324 7.92549 8.10042 8.61398 8.78816 9.48387 10.10403 10.77606 11.64428 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011764 B = 0.003862 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.615535 B = 7247.796211 C = 9075.158752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.083 3.917 3 N -0.603 5.603 4 C 0.521 3.479 5 O -0.438 6.438 6 C -0.119 4.119 7 C -0.094 4.094 8 C -0.127 4.127 9 C -0.013 4.013 10 C -0.162 4.162 11 C 0.078 3.922 12 N -0.495 5.495 13 C 0.158 3.842 14 C -0.120 4.120 15 C -0.025 4.025 16 C 0.137 3.863 17 H 0.082 0.918 18 C -0.160 4.160 19 C 0.160 3.840 20 N -0.577 5.577 21 C -0.199 4.199 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.907 3.093 26 H -0.293 1.293 27 H -0.293 1.293 28 H -0.284 1.284 29 C 0.141 3.859 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.155 0.845 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.151 0.849 39 H 0.167 0.833 40 H 0.146 0.854 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.095 0.905 44 H 0.027 0.973 45 H 0.246 0.754 46 H 0.023 0.977 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.851 -21.210 -5.543 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.040 4.040 3 N -0.339 5.339 4 C 0.307 3.693 5 O -0.308 6.308 6 C -0.123 4.123 7 C -0.113 4.113 8 C -0.145 4.145 9 C -0.018 4.018 10 C -0.182 4.182 11 C -0.065 4.065 12 N -0.203 5.203 13 C -0.013 4.013 14 C -0.122 4.122 15 C -0.046 4.046 16 C 0.033 3.967 17 H 0.100 0.900 18 C -0.200 4.200 19 C 0.035 3.965 20 N -0.302 5.302 21 C -0.329 4.329 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.573 5.573 25 Si 0.739 3.261 26 H -0.220 1.220 27 H -0.220 1.220 28 H -0.210 1.210 29 C 0.014 3.986 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.172 0.828 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.169 0.831 39 H 0.184 0.816 40 H 0.164 0.836 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.113 0.887 44 H 0.044 0.956 45 H 0.057 0.943 46 H 0.041 0.959 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -2.940 -20.345 -6.292 21.498 hybrid contribution -0.230 0.418 0.453 0.658 sum -3.170 -19.927 -5.839 21.006 Atomic orbital electron populations 1.22327 0.96122 1.02042 1.03177 1.22146 0.94379 0.83836 1.03607 1.47721 1.60710 1.12505 1.13012 1.18309 0.81158 0.87049 0.82823 1.91247 1.40951 1.16236 1.82350 1.20235 0.96849 0.98262 0.96940 1.21949 0.98756 0.93405 0.97144 1.20844 0.98259 1.01554 0.93855 1.18277 0.94278 0.94519 0.94720 1.21888 1.00487 1.01087 0.94704 1.22206 0.90310 0.94889 0.99077 1.67475 1.26446 1.06030 1.20344 1.23345 0.95224 0.94995 0.87727 1.18999 0.97429 0.98600 0.97137 1.21462 0.97052 0.95561 0.90534 1.22060 0.97913 0.91534 0.85158 0.89985 1.23539 0.96748 0.98444 1.01248 1.21950 0.84385 0.96195 0.93942 1.44133 1.14469 1.06196 1.65367 1.18973 0.95888 0.88360 1.29632 0.91170 1.24652 0.97237 0.97809 1.01250 1.69819 1.18762 1.24804 1.43880 0.86163 0.79794 0.82660 0.77468 1.22028 1.21998 1.21016 1.21354 0.93995 0.87864 0.95386 0.91844 0.91630 0.91364 0.88483 0.91280 0.82764 0.84896 0.84530 0.83134 0.81619 0.83581 0.91694 0.92540 0.88736 0.95580 0.94314 0.95909 0.96311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 9.07 37.16 0.34 -1.23 16 2 C 0.08 0.87 5.57 -4.04 -0.02 0.85 16 3 N -0.60 -9.25 2.58 -165.16 -0.43 -9.68 16 4 C 0.52 9.45 6.48 -12.36 -0.08 9.37 16 5 O -0.44 -10.39 10.20 5.31 0.05 -10.34 16 6 C -0.12 -1.77 5.47 -104.97 -0.57 -2.34 16 7 C -0.09 -1.07 7.28 -39.53 -0.29 -1.36 16 8 C -0.13 -1.28 9.77 -39.63 -0.39 -1.66 16 9 C -0.01 -0.15 5.75 -106.73 -0.61 -0.76 16 10 C -0.16 -1.54 9.87 -39.40 -0.39 -1.93 16 11 C 0.08 0.80 11.07 -17.95 -0.20 0.60 16 12 N -0.50 -6.13 10.30 -13.12 -0.14 -6.26 16 13 C 0.16 1.92 11.05 -16.94 -0.19 1.73 16 14 C -0.12 -1.53 5.74 -106.88 -0.61 -2.15 16 15 C -0.03 -0.37 9.37 -38.75 -0.36 -0.73 16 16 C 0.14 2.36 3.35 -66.10 -0.22 2.14 16 17 H 0.08 1.16 8.04 -51.93 -0.42 0.75 16 18 C -0.16 -3.08 6.72 -24.59 -0.17 -3.24 16 19 C 0.16 4.09 4.94 -2.53 -0.01 4.07 16 20 N -0.58 -15.44 2.19 -170.07 -0.37 -15.81 16 21 C -0.20 -5.88 10.27 -15.06 -0.15 -6.03 16 22 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 23 C -0.01 -0.45 5.49 -17.43 -0.10 -0.54 16 24 N -0.92 -28.43 10.09 55.49 0.56 -27.87 16 25 Si 0.91 23.37 29.55 -169.99 -5.02 18.35 16 26 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16 27 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 28 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 29 C 0.14 3.09 5.97 -3.06 -0.02 3.08 16 30 H 0.06 0.61 6.81 -51.93 -0.35 0.25 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.65 7.97 -51.93 -0.41 0.24 16 33 H 0.10 0.93 4.12 -51.93 -0.21 0.72 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.16 1.50 2.89 -52.49 -0.15 1.35 16 36 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.15 2.18 7.87 -52.48 -0.41 1.76 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 43 H 0.09 2.75 5.87 -51.93 -0.31 2.44 16 44 H 0.03 0.74 5.79 -51.93 -0.30 0.44 16 45 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.02 0.53 6.94 -51.93 -0.36 0.17 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -35.96 364.77 -10.17 -46.13 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.28 Total: 0.11 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -4.05 Total: -0.14 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.37 Total: -59.61 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.05 Total: -10.34 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.96 -10.17 -46.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034014251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.419 kcal (2) G-P(sol) polarization free energy of solvation -35.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds