Wall clock time and date at job start Sat Apr 11 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46866 * 2 1 4 4 C 1.34773 * 120.00323 * 92.19718 * 3 2 1 5 5 O 1.21598 * 120.00359 * 186.11365 * 4 3 2 6 6 C 1.47452 * 119.99878 * 6.12070 * 4 3 2 7 7 C 1.38859 * 120.46339 * 54.33617 * 6 4 3 8 8 C 1.38900 * 120.68227 * 179.97438 * 7 6 4 9 9 C 1.36378 * 121.26704 * 0.05078 * 8 7 6 10 10 C 1.40404 * 119.98343 * 359.95240 * 9 8 7 11 11 C 1.40475 * 121.94777 * 180.02562 * 10 9 8 12 12 N 1.31274 * 119.87960 * 180.23657 * 11 10 9 13 13 C 1.32549 * 122.73399 * 359.46946 * 12 11 10 14 14 C 1.36336 * 121.81761 * 0.54228 * 13 12 11 15 15 C 1.40282 * 118.70464 * 359.73829 * 14 13 12 16 16 C 1.46500 * 119.99534 * 272.19525 * 3 2 1 17 17 H 1.08997 * 110.64504 * 10.72858 * 16 3 2 18 18 C 1.55161 * 110.71934 * 247.39338 * 16 3 2 19 19 C 1.54910 * 101.58333 * 277.14445 * 18 16 3 20 20 N 1.47431 * 104.83051 * 322.98901 * 19 18 16 21 21 C 1.36932 * 125.64718 * 204.16561 * 20 19 18 22 22 H 1.07995 * 120.00426 * 336.84247 * 21 20 19 23 23 C 1.38815 * 119.99719 * 156.84205 * 21 20 19 24 24 N 1.31620 * 120.00004 * 157.06966 * 23 21 20 25 25 Si 1.86795 * 120.00110 * 337.06339 * 23 21 20 26 26 H 1.48506 * 109.47069 * 90.97897 * 25 23 21 27 27 H 1.48503 * 109.47110 * 210.97490 * 25 23 21 28 28 H 1.48497 * 109.47282 * 330.97913 * 25 23 21 29 29 C 1.47023 * 108.70197 * 24.12690 * 20 19 18 30 30 H 1.09000 * 109.47292 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47296 * 300.00433 * 1 2 3 32 32 H 1.08996 * 109.47233 * 60.00354 * 1 2 3 33 33 H 1.08997 * 109.46734 * 239.99861 * 2 1 3 34 34 H 1.08998 * 109.46759 * 119.99457 * 2 1 3 35 35 H 1.07999 * 119.66385 * 359.97438 * 7 6 4 36 36 H 1.07999 * 119.36830 * 180.02562 * 8 7 6 37 37 H 1.08000 * 120.00677 * 179.97438 * 9 8 7 38 38 H 1.07999 * 120.05790 * 359.95579 * 11 10 9 39 39 H 1.07995 * 119.09209 * 180.26246 * 13 12 11 40 40 H 1.08007 * 120.64528 * 179.71874 * 14 13 12 41 41 H 1.09003 * 111.00415 * 35.21801 * 18 16 3 42 42 H 1.08999 * 111.00718 * 159.06460 * 18 16 3 43 43 H 1.09003 * 110.36264 * 204.15659 * 19 18 16 44 44 H 1.08993 * 110.36644 * 81.82799 * 19 18 16 45 45 H 0.96993 * 120.00697 * 180.02562 * 24 23 21 46 46 H 1.09001 * 109.88578 * 239.52190 * 29 20 19 47 47 H 1.09003 * 109.87617 * 118.35871 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2851 2.0018 1.1663 5 8 2.5831 3.1806 1.1736 6 6 2.2158 1.2510 2.4335 7 6 2.9433 0.0798 2.5986 8 6 2.8818 -0.6307 3.7905 9 6 2.1089 -0.2039 4.8299 10 6 1.3566 0.9752 4.7070 11 6 0.5474 1.4529 5.7512 12 7 -0.1429 2.5579 5.5905 13 6 -0.1079 3.2687 4.4723 14 6 0.6464 2.8884 3.4022 15 6 1.4077 1.7140 3.4978 16 6 2.2166 2.0880 -1.2679 17 1 1.7823 1.5247 -2.0938 18 6 3.7242 2.3586 -1.5156 19 6 3.9495 3.6469 -0.6854 20 7 2.7114 4.4285 -0.8581 21 6 2.5996 5.7865 -0.7228 22 1 3.3173 6.3308 -0.1271 23 6 1.5635 6.4636 -1.3513 24 7 1.1706 7.6343 -0.8959 25 14 0.7269 5.7133 -2.8434 26 1 -0.4330 4.8975 -2.4026 27 1 0.2566 6.7964 -3.7440 28 1 1.6920 4.8496 -3.5699 29 6 1.6170 3.5084 -1.2008 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 3.5633 -0.2825 1.7919 36 1 3.4567 -1.5388 3.8960 37 1 2.0759 -0.7725 5.7475 38 1 0.4897 0.9096 6.6827 39 1 -0.6966 4.1716 4.4054 40 1 0.6574 3.4797 2.4984 41 1 4.3354 1.5387 -1.1382 42 1 3.9208 2.5357 -2.5729 43 1 4.8051 4.2016 -1.0706 44 1 4.0985 3.3997 0.3656 45 1 0.4464 8.1074 -1.3347 46 1 1.1947 3.7787 -2.1686 47 1 0.8447 3.5489 -0.4326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034046405.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:48 Heat of formation + Delta-G solvation = 73.375704 kcal Electronic energy + Delta-G solvation = -30960.357091 eV Core-core repulsion = 27109.771129 eV Total energy + Delta-G solvation = -3850.585962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.27497 -41.18774 -38.67836 -37.82986 -36.81274 -34.53639 -33.84485 -32.32044 -31.95929 -31.02586 -30.51916 -29.30852 -26.37459 -25.65974 -24.81447 -24.61124 -23.78814 -22.60756 -21.90506 -20.00270 -19.15589 -18.93823 -18.37830 -17.79636 -17.66524 -17.48554 -16.93579 -16.28856 -15.95766 -15.71739 -15.32122 -15.21401 -15.11875 -14.99688 -14.74876 -14.67379 -14.59035 -13.97897 -13.77891 -13.62634 -13.38464 -13.09302 -13.04378 -12.95628 -12.92336 -12.76558 -12.45496 -12.35036 -12.26472 -12.09187 -11.84399 -11.76314 -11.28778 -11.22110 -10.78246 -10.62624 -10.42745 -10.06626 -9.57077 -9.07467 -8.77251 -8.18617 -5.38002 -0.78179 -0.15037 0.70407 1.22056 1.30306 1.42891 1.70068 1.91911 2.15430 2.40519 3.00740 3.03003 3.35712 3.42402 3.51404 3.65938 3.73179 3.79000 3.82257 3.91079 3.96370 4.05230 4.18030 4.21624 4.33598 4.37699 4.40500 4.50374 4.58114 4.65734 4.70817 4.72213 4.77452 4.83397 4.91666 4.91812 4.96632 4.98588 5.08716 5.08876 5.29532 5.32244 5.37113 5.49353 5.59712 5.72646 5.76058 5.82723 6.11268 6.46527 6.84451 6.90477 7.33832 7.60568 8.23104 9.04255 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.004647 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.672284 B = 6024.262858 C = 7070.491282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.095 3.905 3 N -0.599 5.599 4 C 0.526 3.474 5 O -0.512 6.512 6 C -0.140 4.140 7 C -0.050 4.050 8 C -0.118 4.118 9 C -0.053 4.053 10 C -0.129 4.129 11 C 0.154 3.846 12 N -0.512 5.512 13 C 0.069 3.931 14 C -0.172 4.172 15 C -0.010 4.010 16 C 0.144 3.856 17 H 0.134 0.866 18 C -0.127 4.127 19 C 0.124 3.876 20 N -0.597 5.597 21 C -0.214 4.214 22 H 0.035 0.965 23 C -0.047 4.047 24 N -0.964 5.964 25 Si 0.959 3.041 26 H -0.288 1.288 27 H -0.306 1.306 28 H -0.255 1.255 29 C 0.124 3.876 30 H 0.095 0.905 31 H 0.025 0.975 32 H 0.046 0.954 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.159 0.841 36 H 0.180 0.820 37 H 0.183 0.817 38 H 0.211 0.789 39 H 0.149 0.851 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.020 0.980 44 H 0.047 0.953 45 H 0.259 0.741 46 H 0.015 0.985 47 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.389 -30.884 8.181 32.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.025 4.025 3 N -0.332 5.332 4 C 0.314 3.686 5 O -0.387 6.387 6 C -0.143 4.143 7 C -0.069 4.069 8 C -0.136 4.136 9 C -0.072 4.072 10 C -0.131 4.131 11 C -0.018 4.018 12 N -0.220 5.220 13 C -0.073 4.073 14 C -0.192 4.192 15 C -0.016 4.016 16 C 0.040 3.960 17 H 0.151 0.849 18 C -0.165 4.165 19 C 0.000 4.000 20 N -0.323 5.323 21 C -0.344 4.344 22 H 0.052 0.948 23 C -0.241 4.241 24 N -0.612 5.612 25 Si 0.790 3.210 26 H -0.215 1.215 27 H -0.235 1.235 28 H -0.180 1.180 29 C -0.001 4.001 30 H 0.114 0.886 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.176 0.824 36 H 0.197 0.803 37 H 0.200 0.800 38 H 0.228 0.772 39 H 0.166 0.834 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.038 0.962 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.032 0.968 47 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 1.888 -29.612 8.745 30.934 hybrid contribution -0.451 1.416 -1.476 2.095 sum 1.437 -28.195 7.269 29.153 Atomic orbital electron populations 1.22187 0.96601 1.03165 1.00717 1.22098 0.94091 0.80427 1.05920 1.47970 1.65835 1.15356 1.04087 1.18696 0.78280 0.87048 0.84585 1.91109 1.44719 1.16274 1.86601 1.19890 1.02638 0.98292 0.93515 1.21778 0.95021 0.90500 0.99611 1.21332 0.99305 1.01431 0.91493 1.21641 0.92194 0.92402 1.00969 1.19291 1.01671 0.98362 0.93732 1.24041 0.88473 0.90740 0.98533 1.67483 1.22345 1.08079 1.24118 1.22192 0.97255 0.99139 0.88689 1.21857 0.99075 0.97795 1.00515 1.18076 0.95262 0.93970 0.94251 1.22045 0.96590 0.90893 0.86485 0.84875 1.23193 0.95002 0.97400 1.00955 1.22150 0.87728 0.91852 0.98293 1.44319 1.04941 1.01060 1.81933 1.18454 1.11438 0.82167 1.22319 0.94756 1.25725 0.99649 0.96546 1.02143 1.70028 1.30677 1.18536 1.41979 0.85651 0.78102 0.76125 0.81170 1.21509 1.23518 1.17973 1.21765 0.91663 0.91288 0.95417 0.88603 0.95550 0.93440 0.86804 0.87859 0.82386 0.80299 0.79979 0.77214 0.83368 0.88194 0.87769 0.89445 0.96163 0.93586 0.93199 0.96762 0.98342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 10.24 71.98 0.74 -2.37 16 2 C 0.10 1.55 5.89 86.38 0.51 2.06 16 3 N -0.60 -16.47 2.50 -795.06 -1.99 -18.46 16 4 C 0.53 18.16 5.59 86.67 0.48 18.65 16 5 O -0.51 -24.20 9.18 -4.02 -0.04 -24.24 16 6 C -0.14 -3.82 4.96 -19.92 -0.10 -3.92 16 7 C -0.05 -0.79 7.48 22.58 0.17 -0.62 16 8 C -0.12 -1.12 9.92 21.99 0.22 -0.90 16 9 C -0.05 -0.58 9.79 22.36 0.22 -0.36 16 10 C -0.13 -2.72 5.74 -21.33 -0.12 -2.84 16 11 C 0.15 3.18 11.05 85.32 0.94 4.12 16 12 N -0.51 -14.84 10.30 -195.40 -2.01 -16.85 16 13 C 0.07 2.33 11.07 84.14 0.93 3.26 16 14 C -0.17 -6.43 9.29 22.32 0.21 -6.22 16 15 C -0.01 -0.30 5.77 -21.12 -0.12 -0.42 16 16 C 0.14 4.53 3.69 46.18 0.17 4.70 16 17 H 0.13 3.13 7.99 -2.39 -0.02 3.11 16 18 C -0.13 -3.86 6.66 31.99 0.21 -3.64 16 19 C 0.12 5.48 6.24 86.85 0.54 6.02 16 20 N -0.60 -32.29 2.04 -691.97 -1.41 -33.70 16 21 C -0.21 -13.99 10.54 84.04 0.89 -13.10 16 22 H 0.03 2.50 8.06 -2.91 -0.02 2.48 16 23 C -0.05 -3.10 5.43 84.86 0.46 -2.64 16 24 N -0.96 -66.95 13.97 21.65 0.30 -66.64 16 25 Si 0.96 51.47 24.50 68.60 1.68 53.15 16 26 H -0.29 -15.02 7.06 99.48 0.70 -14.32 16 27 H -0.31 -16.31 7.11 99.48 0.71 -15.60 16 28 H -0.25 -12.58 6.81 99.48 0.68 -11.90 16 29 C 0.12 5.82 4.44 86.73 0.39 6.21 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.11 1.11 8.08 -2.39 -0.02 1.09 16 34 H 0.10 1.29 4.41 -2.39 -0.01 1.28 16 35 H 0.16 1.68 7.48 -2.91 -0.02 1.66 16 36 H 0.18 0.15 8.06 -2.91 -0.02 0.13 16 37 H 0.18 0.34 8.06 -2.91 -0.02 0.31 16 38 H 0.21 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.15 4.87 8.06 -2.91 -0.02 4.85 16 40 H 0.10 4.62 6.59 -2.91 -0.02 4.60 16 41 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.05 2.20 5.20 -21.88 -0.11 2.08 16 45 H 0.26 16.98 8.31 -92.71 -0.77 16.21 16 46 H 0.02 0.73 3.28 -2.39 -0.01 0.72 16 47 H 0.00 -0.08 7.39 -2.39 -0.02 -0.10 16 Total: -1.00 -95.78 365.14 4.12 -91.66 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 0.85 Total: 7.12 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 6.73 Total: 7.97 kcal Atomic # 7 Polarization: -130.55 SS G_CDS: -5.11 Total: -135.66 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.04 Total: -24.24 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 1.68 Total: 53.15 kcal Total: -95.78 4.12 -91.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034046405.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.038 kcal (2) G-P(sol) polarization free energy of solvation -95.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds