Wall clock time and date at job start Sat Apr 11 2020 05:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.46896 * 2 1 4 4 C 1.34776 * 120.00034 * 94.97035 * 3 2 1 5 5 O 1.21606 * 120.00154 * 185.35686 * 4 3 2 6 6 C 1.47445 * 119.99993 * 5.34932 * 4 3 2 7 7 C 1.38948 * 121.16890 * 55.00579 * 6 4 3 8 8 N 1.32200 * 121.31758 * 180.27387 * 7 6 4 9 9 C 1.31202 * 123.69448 * 359.45793 * 8 7 6 10 10 C 1.40383 * 120.91360 * 0.53911 * 9 8 7 11 11 C 1.40400 * 122.14721 * 179.71999 * 10 9 8 12 12 C 1.36234 * 119.48373 * 180.02562 * 11 10 9 13 13 C 1.39287 * 121.11108 * 0.02562 * 12 11 10 14 14 C 1.36441 * 120.94592 * 359.97438 * 13 12 11 15 15 C 1.39693 * 119.43496 * 0.02562 * 14 13 12 16 16 C 1.46501 * 120.00292 * 274.95913 * 3 2 1 17 17 H 1.08998 * 110.63930 * 1.69618 * 16 3 2 18 18 C 1.55163 * 110.71782 * 125.02462 * 16 3 2 19 19 C 1.54914 * 101.57930 * 153.87040 * 18 16 3 20 20 N 1.47421 * 104.83121 * 322.99373 * 19 18 16 21 21 C 1.36942 * 125.64903 * 204.16832 * 20 19 18 22 22 H 1.07996 * 120.00404 * 179.97438 * 21 20 19 23 23 C 1.38809 * 119.99692 * 359.94937 * 21 20 19 24 24 N 1.31623 * 119.99979 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99796 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47242 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46939 * 120.00870 * 25 23 21 28 28 H 1.48504 * 109.47155 * 240.00151 * 25 23 21 29 29 C 1.47019 * 108.70576 * 24.12684 * 20 19 18 30 30 H 1.08995 * 109.47691 * 59.99878 * 1 2 3 31 31 H 1.09004 * 109.47530 * 180.02562 * 1 2 3 32 32 H 1.09011 * 109.46992 * 299.99499 * 1 2 3 33 33 H 1.08996 * 109.46809 * 240.00052 * 2 1 3 34 34 H 1.08999 * 109.46982 * 120.00172 * 2 1 3 35 35 H 1.07997 * 119.34028 * 359.97438 * 7 6 4 36 36 H 1.08001 * 119.54359 * 180.28678 * 9 8 7 37 37 H 1.07996 * 120.25605 * 0.04504 * 11 10 9 38 38 H 1.08001 * 119.44171 * 180.02562 * 12 11 10 39 39 H 1.08005 * 119.52895 * 180.02562 * 13 12 11 40 40 H 1.07998 * 120.28717 * 180.02562 * 14 13 12 41 41 H 1.08995 * 111.00613 * 271.94584 * 18 16 3 42 42 H 1.09000 * 111.00204 * 35.80144 * 18 16 3 43 43 H 1.08998 * 110.36504 * 204.15402 * 19 18 16 44 44 H 1.08996 * 110.36668 * 81.83074 * 19 18 16 45 45 H 0.97002 * 119.99604 * 179.97438 * 24 23 21 46 46 H 1.09006 * 109.88375 * 239.52184 * 29 20 19 47 47 H 1.09004 * 109.88592 * 118.35663 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3382 1.9828 1.1628 5 8 2.6500 3.1582 1.1736 6 6 2.3100 1.2160 2.4218 7 6 3.0351 0.0392 2.5635 8 7 3.0077 -0.6535 3.6892 9 6 2.3202 -0.2953 4.7477 10 6 1.5424 0.8733 4.7410 11 6 0.7922 1.2778 5.8567 12 6 0.0558 2.4221 5.7904 13 6 0.0338 3.1979 4.6338 14 6 0.7509 2.8343 3.5314 15 6 1.5170 1.6667 3.5652 16 6 2.1590 2.1084 -1.2639 17 1 1.8317 1.4914 -2.1007 18 6 1.3698 3.4436 -1.2198 19 6 2.1543 4.3025 -2.2429 20 7 3.5658 3.9228 -2.0507 21 6 4.6505 4.6980 -2.3637 22 1 5.6488 4.3278 -2.1833 23 6 4.4667 5.9593 -2.9132 24 7 3.2499 6.4105 -3.1330 25 14 5.9463 7.0164 -3.3408 26 1 7.1926 6.2846 -2.9997 27 1 5.9336 7.3210 -4.7941 28 1 5.8889 8.2838 -2.5689 29 6 3.6161 2.5747 -1.4664 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.6292 -0.3192 1.7359 36 1 2.3497 -0.9103 5.6350 37 1 0.7992 0.6867 6.7605 38 1 -0.5207 2.7328 6.6492 39 1 -0.5586 4.1006 4.6095 40 1 0.7265 3.4440 2.6404 41 1 0.3384 3.2986 -1.5409 42 1 1.4090 3.8879 -0.2253 43 1 2.0148 5.3631 -2.0339 44 1 1.8338 4.0698 -3.2584 45 1 3.1216 7.2922 -3.5167 46 1 4.1322 2.6055 -0.5068 47 1 4.1316 1.8954 -2.1453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034046910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:52 Heat of formation + Delta-G solvation = 67.364235 kcal Electronic energy + Delta-G solvation = -29983.804733 eV Core-core repulsion = 26132.958094 eV Total energy + Delta-G solvation = -3850.846639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.14246 -39.71065 -37.57142 -36.76629 -35.49924 -33.07292 -32.19432 -31.39058 -30.35775 -30.05031 -28.89609 -27.10565 -25.18886 -24.30454 -23.87072 -23.34885 -22.65824 -20.93421 -20.10189 -19.04120 -18.21734 -17.63598 -17.11059 -16.85938 -16.19206 -15.79763 -15.08977 -14.87713 -14.60326 -14.45799 -14.25038 -14.17258 -13.94142 -13.74851 -13.59295 -13.20147 -13.06623 -12.78296 -12.42184 -12.17819 -12.12681 -11.93093 -11.75714 -11.48054 -11.45005 -11.17216 -10.95881 -10.85693 -10.74527 -10.54876 -10.25338 -10.01340 -9.88573 -9.74253 -9.48179 -9.31165 -9.07622 -8.56206 -8.38809 -8.23150 -6.70911 -5.54844 -2.95281 -0.03197 0.65850 1.52667 2.69493 2.87088 3.09623 3.46414 3.51666 3.54361 3.81061 4.08821 4.28162 4.35060 4.49105 4.58851 4.62949 4.70574 4.85247 4.92004 5.03590 5.10827 5.25536 5.31207 5.38635 5.46885 5.51290 5.56769 5.58392 5.65342 5.69417 5.72281 5.81189 5.82382 5.91565 6.08218 6.12639 6.22037 6.30098 6.32900 6.57180 6.57350 6.61230 6.67266 6.79415 7.19126 7.52159 7.65232 7.68961 7.73725 7.96248 8.35419 8.47698 9.32484 9.93536 10.58328 11.49184 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014858 B = 0.003243 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.059546 B = 8632.336468 C = 9119.868352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.095 3.905 3 N -0.597 5.597 4 C 0.558 3.442 5 O -0.493 6.493 6 C -0.149 4.149 7 C 0.106 3.894 8 N -0.490 5.490 9 C 0.160 3.840 10 C -0.115 4.115 11 C -0.089 4.089 12 C -0.118 4.118 13 C -0.095 4.095 14 C -0.100 4.100 15 C 0.006 3.994 16 C 0.135 3.865 17 H 0.090 0.910 18 C -0.158 4.158 19 C 0.158 3.842 20 N -0.596 5.596 21 C -0.214 4.214 22 H 0.076 0.924 23 C -0.013 4.013 24 N -0.923 5.923 25 Si 0.913 3.087 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.134 3.866 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.009 0.991 45 H 0.250 0.750 46 H 0.032 0.968 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.107 -15.947 16.585 25.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.029 4.029 3 N -0.330 5.330 4 C 0.343 3.657 5 O -0.367 6.367 6 C -0.154 4.154 7 C -0.037 4.037 8 N -0.197 5.197 9 C -0.012 4.012 10 C -0.117 4.117 11 C -0.109 4.109 12 C -0.136 4.136 13 C -0.115 4.115 14 C -0.118 4.118 15 C 0.001 3.999 16 C 0.033 3.967 17 H 0.108 0.892 18 C -0.197 4.197 19 C 0.033 3.967 20 N -0.322 5.322 21 C -0.342 4.342 22 H 0.094 0.906 23 C -0.208 4.208 24 N -0.572 5.572 25 Si 0.744 3.256 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.218 1.218 29 C 0.007 3.993 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.178 0.822 36 H 0.181 0.819 37 H 0.152 0.848 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.156 0.844 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.125 0.875 44 H 0.027 0.973 45 H 0.061 0.939 46 H 0.050 0.950 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -9.323 -15.849 16.346 24.603 hybrid contribution 0.245 1.197 -0.349 1.271 sum -9.078 -14.651 15.997 23.515 Atomic orbital electron populations 1.22167 0.95827 1.01912 1.02675 1.21785 0.94789 0.82859 1.03429 1.47941 1.64809 1.13918 1.06319 1.17861 0.78301 0.86824 0.82665 1.90926 1.45218 1.14612 1.85943 1.22119 1.00987 0.97235 0.95095 1.22664 0.96149 0.89620 0.95289 1.67104 1.19650 1.33104 0.99890 1.23192 0.89505 0.92282 0.96191 1.18955 1.00806 0.97341 0.94640 1.20961 0.95926 0.96945 0.97075 1.20964 0.99318 0.95029 0.98270 1.21101 0.98059 0.99577 0.92723 1.21101 0.95404 0.95295 0.99968 1.18862 0.95013 0.94508 0.91547 1.22240 0.98032 0.93420 0.83029 0.89152 1.23493 0.97266 0.95468 1.03482 1.21843 0.81806 1.00559 0.92485 1.44303 1.02722 1.12320 1.72840 1.19103 0.85743 0.95911 1.33478 0.90637 1.24756 0.96761 0.97557 1.01735 1.69812 1.18450 1.18562 1.50404 0.86007 0.81579 0.80430 0.77569 1.20605 1.21862 1.21811 1.21472 0.92825 0.88426 0.96611 0.91890 0.91745 0.92734 0.90105 0.90105 0.82217 0.81853 0.84752 0.85426 0.85221 0.84364 0.93004 0.89580 0.87547 0.97287 0.93945 0.95038 0.96381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 10.24 37.16 0.38 -1.29 16 2 C 0.09 1.04 5.92 -4.05 -0.02 1.01 16 3 N -0.60 -9.04 2.54 -165.28 -0.42 -9.46 16 4 C 0.56 9.46 5.65 -12.51 -0.07 9.39 16 5 O -0.49 -10.62 12.48 5.27 0.07 -10.56 16 6 C -0.15 -2.12 5.08 -102.66 -0.52 -2.64 16 7 C 0.11 1.33 8.69 -17.13 -0.15 1.18 16 8 N -0.49 -5.77 10.22 -12.58 -0.13 -5.90 16 9 C 0.16 1.55 11.00 -17.01 -0.19 1.37 16 10 C -0.12 -1.23 5.74 -106.89 -0.61 -1.84 16 11 C -0.09 -0.72 9.82 -39.49 -0.39 -1.11 16 12 C -0.12 -0.96 9.94 -39.91 -0.40 -1.36 16 13 C -0.10 -0.96 9.96 -39.84 -0.40 -1.36 16 14 C -0.10 -1.30 9.37 -39.69 -0.37 -1.67 16 15 C 0.01 0.08 5.91 -104.74 -0.62 -0.54 16 16 C 0.14 2.46 3.45 -66.10 -0.23 2.23 16 17 H 0.09 1.45 7.94 -51.93 -0.41 1.04 16 18 C -0.16 -3.24 6.40 -24.58 -0.16 -3.40 16 19 C 0.16 4.05 5.89 -2.53 -0.01 4.04 16 20 N -0.60 -16.21 3.39 -170.08 -0.58 -16.78 16 21 C -0.21 -6.30 10.27 -15.06 -0.15 -6.46 16 22 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 23 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 24 N -0.92 -27.96 10.09 55.49 0.56 -27.40 16 25 Si 0.91 23.08 29.55 -169.99 -5.02 18.05 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 29 C 0.13 3.01 6.52 -3.07 -0.02 2.99 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 33 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 34 H 0.08 0.82 4.43 -51.93 -0.23 0.59 16 35 H 0.16 1.79 7.55 -52.49 -0.40 1.40 16 36 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 40 H 0.14 2.05 6.81 -52.49 -0.36 1.70 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.09 1.93 5.62 -51.93 -0.29 1.64 16 43 H 0.11 3.09 5.87 -51.93 -0.30 2.79 16 44 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.03 0.76 6.44 -51.93 -0.33 0.43 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -35.24 374.87 -10.42 -45.66 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.52 Total: 0.69 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -4.03 Total: 0.06 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.57 Total: -59.55 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.56 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.24 -10.42 -45.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034046910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.026 kcal (2) G-P(sol) polarization free energy of solvation -35.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds