Wall clock time and date at job start Sat Apr 11 2020 05:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.46896 * 2 1 4 4 C 1.34776 * 120.00034 * 94.97035 * 3 2 1 5 5 O 1.21606 * 120.00154 * 185.35686 * 4 3 2 6 6 C 1.47445 * 119.99993 * 5.34932 * 4 3 2 7 7 C 1.38948 * 121.16890 * 55.00579 * 6 4 3 8 8 N 1.32200 * 121.31758 * 180.27387 * 7 6 4 9 9 C 1.31202 * 123.69448 * 359.45793 * 8 7 6 10 10 C 1.40383 * 120.91360 * 0.53911 * 9 8 7 11 11 C 1.40400 * 122.14721 * 179.71999 * 10 9 8 12 12 C 1.36234 * 119.48373 * 180.02562 * 11 10 9 13 13 C 1.39287 * 121.11108 * 0.02562 * 12 11 10 14 14 C 1.36441 * 120.94592 * 359.97438 * 13 12 11 15 15 C 1.39693 * 119.43496 * 0.02562 * 14 13 12 16 16 C 1.46501 * 120.00292 * 274.95913 * 3 2 1 17 17 H 1.08998 * 110.63930 * 1.69618 * 16 3 2 18 18 C 1.55163 * 110.71782 * 125.02462 * 16 3 2 19 19 C 1.54914 * 101.57930 * 153.87040 * 18 16 3 20 20 N 1.47421 * 104.83121 * 322.99373 * 19 18 16 21 21 C 1.36942 * 125.64903 * 204.16832 * 20 19 18 22 22 H 1.07996 * 120.00404 * 179.97438 * 21 20 19 23 23 C 1.38809 * 119.99692 * 359.94937 * 21 20 19 24 24 N 1.31623 * 119.99979 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99796 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47242 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46939 * 120.00870 * 25 23 21 28 28 H 1.48504 * 109.47155 * 240.00151 * 25 23 21 29 29 C 1.47019 * 108.70576 * 24.12684 * 20 19 18 30 30 H 1.08995 * 109.47691 * 59.99878 * 1 2 3 31 31 H 1.09004 * 109.47530 * 180.02562 * 1 2 3 32 32 H 1.09011 * 109.46992 * 299.99499 * 1 2 3 33 33 H 1.08996 * 109.46809 * 240.00052 * 2 1 3 34 34 H 1.08999 * 109.46982 * 120.00172 * 2 1 3 35 35 H 1.07997 * 119.34028 * 359.97438 * 7 6 4 36 36 H 1.08001 * 119.54359 * 180.28678 * 9 8 7 37 37 H 1.07996 * 120.25605 * 0.04504 * 11 10 9 38 38 H 1.08001 * 119.44171 * 180.02562 * 12 11 10 39 39 H 1.08005 * 119.52895 * 180.02562 * 13 12 11 40 40 H 1.07998 * 120.28717 * 180.02562 * 14 13 12 41 41 H 1.08995 * 111.00613 * 271.94584 * 18 16 3 42 42 H 1.09000 * 111.00204 * 35.80144 * 18 16 3 43 43 H 1.08998 * 110.36504 * 204.15402 * 19 18 16 44 44 H 1.08996 * 110.36668 * 81.83074 * 19 18 16 45 45 H 0.97002 * 119.99604 * 179.97438 * 24 23 21 46 46 H 1.09006 * 109.88375 * 239.52184 * 29 20 19 47 47 H 1.09004 * 109.88592 * 118.35663 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3382 1.9828 1.1628 5 8 2.6500 3.1582 1.1736 6 6 2.3100 1.2160 2.4218 7 6 3.0351 0.0392 2.5635 8 7 3.0077 -0.6535 3.6892 9 6 2.3202 -0.2953 4.7477 10 6 1.5424 0.8733 4.7410 11 6 0.7922 1.2778 5.8567 12 6 0.0558 2.4221 5.7904 13 6 0.0338 3.1979 4.6338 14 6 0.7509 2.8343 3.5314 15 6 1.5170 1.6667 3.5652 16 6 2.1590 2.1084 -1.2639 17 1 1.8317 1.4914 -2.1007 18 6 1.3698 3.4436 -1.2198 19 6 2.1543 4.3025 -2.2429 20 7 3.5658 3.9228 -2.0507 21 6 4.6505 4.6980 -2.3637 22 1 5.6488 4.3278 -2.1833 23 6 4.4667 5.9593 -2.9132 24 7 3.2499 6.4105 -3.1330 25 14 5.9463 7.0164 -3.3408 26 1 7.1926 6.2846 -2.9997 27 1 5.9336 7.3210 -4.7941 28 1 5.8889 8.2838 -2.5689 29 6 3.6161 2.5747 -1.4664 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.6292 -0.3192 1.7359 36 1 2.3497 -0.9103 5.6350 37 1 0.7992 0.6867 6.7605 38 1 -0.5207 2.7328 6.6492 39 1 -0.5586 4.1006 4.6095 40 1 0.7265 3.4440 2.6404 41 1 0.3384 3.2986 -1.5409 42 1 1.4090 3.8879 -0.2253 43 1 2.0148 5.3631 -2.0339 44 1 1.8338 4.0698 -3.2584 45 1 3.1216 7.2922 -3.5167 46 1 4.1322 2.6055 -0.5068 47 1 4.1316 1.8954 -2.1453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034046910.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:51 Heat of formation + Delta-G solvation = 45.450737 kcal Electronic energy + Delta-G solvation = -29984.754974 eV Core-core repulsion = 26132.958094 eV Total energy + Delta-G solvation = -3851.796880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.12815 -40.90518 -38.54980 -38.32777 -36.83533 -34.52828 -33.64061 -32.19701 -31.68338 -31.11153 -30.55911 -28.77909 -26.72597 -25.77253 -24.73565 -24.26642 -23.61424 -22.35593 -22.11802 -20.20030 -19.17957 -18.96090 -18.48641 -18.15340 -17.30935 -16.99440 -16.75454 -16.12296 -15.96467 -15.63664 -15.61602 -15.17005 -15.07480 -14.84458 -14.68526 -14.50289 -14.35523 -13.97281 -13.72346 -13.46508 -13.31303 -13.17564 -13.09688 -12.94459 -12.81048 -12.77835 -12.43292 -12.26632 -12.16507 -12.10408 -12.01100 -11.86367 -11.46997 -11.12729 -10.91001 -10.75831 -10.34322 -10.10049 -9.72709 -9.10884 -8.89430 -7.79106 -5.23203 -0.86498 -0.15918 0.68848 1.41462 1.44276 1.54255 1.56201 1.82723 2.05845 2.47770 2.98155 3.21027 3.30235 3.41958 3.52538 3.68649 3.70884 3.84266 3.85422 3.89713 3.97995 4.06494 4.21543 4.24768 4.27991 4.33566 4.47369 4.51143 4.60655 4.62219 4.69461 4.72953 4.79258 4.87851 4.95708 4.96801 4.99426 5.03963 5.07643 5.28218 5.38022 5.40493 5.45394 5.51180 5.59002 5.71692 5.77177 5.85239 6.28056 6.35026 6.83455 7.08261 7.10579 7.75567 8.39696 9.22929 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014858 B = 0.003243 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.059546 B = 8632.336468 C = 9119.868352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.091 3.909 3 N -0.592 5.592 4 C 0.559 3.441 5 O -0.554 6.554 6 C -0.182 4.182 7 C 0.117 3.883 8 N -0.510 5.510 9 C 0.182 3.818 10 C -0.131 4.131 11 C -0.068 4.068 12 C -0.122 4.122 13 C -0.085 4.085 14 C -0.143 4.143 15 C -0.010 4.010 16 C 0.153 3.847 17 H 0.123 0.877 18 C -0.143 4.143 19 C 0.163 3.837 20 N -0.618 5.618 21 C -0.238 4.238 22 H 0.074 0.926 23 C -0.068 4.068 24 N -0.948 5.948 25 Si 0.982 3.018 26 H -0.269 1.269 27 H -0.285 1.285 28 H -0.292 1.292 29 C 0.132 3.868 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.038 0.962 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.166 0.834 36 H 0.212 0.788 37 H 0.182 0.818 38 H 0.165 0.835 39 H 0.143 0.857 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.066 0.934 44 H -0.002 1.002 45 H 0.247 0.753 46 H 0.010 0.990 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.837 -19.013 19.309 29.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.031 4.031 3 N -0.323 5.323 4 C 0.347 3.653 5 O -0.432 6.432 6 C -0.188 4.188 7 C -0.026 4.026 8 N -0.217 5.217 9 C 0.010 3.990 10 C -0.133 4.133 11 C -0.087 4.087 12 C -0.140 4.140 13 C -0.104 4.104 14 C -0.161 4.161 15 C -0.016 4.016 16 C 0.049 3.951 17 H 0.141 0.859 18 C -0.182 4.182 19 C 0.038 3.962 20 N -0.344 5.344 21 C -0.367 4.367 22 H 0.092 0.908 23 C -0.260 4.260 24 N -0.598 5.598 25 Si 0.810 3.190 26 H -0.193 1.193 27 H -0.211 1.211 28 H -0.219 1.219 29 C 0.006 3.994 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.057 0.943 33 H 0.122 0.878 34 H 0.110 0.890 35 H 0.183 0.817 36 H 0.228 0.772 37 H 0.199 0.801 38 H 0.183 0.817 39 H 0.160 0.840 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.015 0.985 45 H 0.057 0.943 46 H 0.028 0.972 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -10.071 -18.986 19.075 28.736 hybrid contribution 0.413 2.119 -1.018 2.387 sum -9.658 -16.867 18.057 26.530 Atomic orbital electron populations 1.22116 0.94790 1.03372 1.01650 1.22096 0.95565 0.80338 1.05062 1.47958 1.64279 1.15314 1.04753 1.18358 0.76755 0.86233 0.83951 1.90884 1.48018 1.17415 1.86929 1.21849 1.04055 0.98482 0.94391 1.22744 0.95077 0.88752 0.96037 1.67234 1.21056 1.33231 1.00224 1.23990 0.86749 0.91587 0.96626 1.19276 1.01913 0.97572 0.94513 1.21511 0.93291 0.96586 0.97332 1.21371 0.99603 0.94734 0.98288 1.21408 0.96461 1.00005 0.92516 1.20928 0.98620 0.96312 1.00227 1.19064 0.95064 0.94987 0.92437 1.21970 0.94453 0.93074 0.85560 0.85909 1.23237 0.98394 0.95967 1.00601 1.21581 0.82267 0.99241 0.93129 1.44593 1.02759 1.14112 1.72980 1.19443 0.86572 0.96888 1.33770 0.90804 1.25654 0.99745 0.98723 1.01916 1.70079 1.20333 1.18599 1.50815 0.84953 0.78566 0.78220 0.77241 1.19346 1.21150 1.21928 1.21595 0.95847 0.86727 0.95225 0.92388 0.88958 0.94278 0.87826 0.89032 0.81668 0.77194 0.80084 0.81716 0.83951 0.88089 0.90138 0.91905 0.91634 0.98459 0.94333 0.97213 0.95228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 10.24 71.98 0.74 -2.22 16 2 C 0.09 1.86 5.92 86.38 0.51 2.37 16 3 N -0.59 -18.26 2.54 -795.09 -2.02 -20.28 16 4 C 0.56 20.20 5.65 86.67 0.49 20.69 16 5 O -0.55 -26.18 12.48 -4.05 -0.05 -26.23 16 6 C -0.18 -5.37 5.08 -18.60 -0.09 -5.47 16 7 C 0.12 2.87 8.69 84.81 0.74 3.61 16 8 N -0.51 -10.84 10.22 -193.72 -1.98 -12.82 16 9 C 0.18 2.85 11.00 85.31 0.94 3.79 16 10 C -0.13 -2.44 5.74 -21.33 -0.12 -2.56 16 11 C -0.07 -0.79 9.82 22.33 0.22 -0.57 16 12 C -0.12 -1.56 9.94 22.06 0.22 -1.34 16 13 C -0.08 -1.66 9.96 22.10 0.22 -1.44 16 14 C -0.14 -3.98 9.37 22.20 0.21 -3.77 16 15 C -0.01 -0.28 5.91 -19.94 -0.12 -0.40 16 16 C 0.15 5.64 3.45 46.18 0.16 5.80 16 17 H 0.12 3.76 7.94 -2.39 -0.02 3.74 16 18 C -0.14 -6.15 6.40 31.99 0.20 -5.95 16 19 C 0.16 8.84 5.89 86.86 0.51 9.36 16 20 N -0.62 -35.34 3.39 -692.00 -2.35 -37.69 16 21 C -0.24 -14.63 10.27 84.03 0.86 -13.76 16 22 H 0.07 4.42 7.83 -2.91 -0.02 4.40 16 23 C -0.07 -4.16 5.49 84.86 0.47 -3.69 16 24 N -0.95 -60.15 10.09 21.65 0.22 -59.93 16 25 Si 0.98 48.89 29.55 68.60 2.03 50.91 16 26 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 27 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 28 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 29 C 0.13 6.18 6.52 86.73 0.57 6.75 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.10 1.69 8.07 -2.39 -0.02 1.67 16 34 H 0.09 1.73 4.43 -2.39 -0.01 1.72 16 35 H 0.17 3.65 7.55 -2.91 -0.02 3.63 16 36 H 0.21 1.19 8.06 -2.91 -0.02 1.17 16 37 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 38 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 39 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.10 3.48 6.81 -2.91 -0.02 3.46 16 41 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 42 H 0.06 3.05 5.62 -2.39 -0.01 3.04 16 43 H 0.07 4.09 5.87 -2.39 -0.01 4.08 16 44 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 45 H 0.25 15.06 8.31 -92.71 -0.77 14.28 16 46 H 0.01 0.50 6.44 -2.38 -0.02 0.49 16 47 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -84.93 374.87 3.55 -81.38 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.98 Total: 13.45 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 6.71 Total: 11.21 kcal Atomic # 7 Polarization: -124.59 SS G_CDS: -6.13 Total: -130.72 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.05 Total: -26.23 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.03 Total: 50.91 kcal Total: -84.93 3.55 -81.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034046910.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.830 kcal (2) G-P(sol) polarization free energy of solvation -84.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds