Wall clock time and date at job start Sat Apr 11 2020 05:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00100 * 2 1 4 4 C 1.52999 * 109.47362 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47165 * 179.97438 * 4 3 2 6 6 C 1.34814 * 126.59446 * 124.99463 * 5 4 3 7 7 C 1.36595 * 106.83867 * 179.97438 * 6 5 4 8 8 C 1.47525 * 125.77209 * 180.02562 * 7 6 5 9 9 O 1.21601 * 119.99687 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00424 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00258 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47286 * 179.97438 * 11 10 8 13 13 H 1.09009 * 109.51189 * 305.00512 * 12 11 10 14 14 C 1.53288 * 109.51698 * 184.90004 * 12 11 10 15 15 N 1.47148 * 108.38952 * 187.77212 * 14 12 11 16 16 C 1.36936 * 120.98549 * 230.55903 * 15 14 12 17 17 H 1.07996 * 119.99964 * 26.23522 * 16 15 14 18 18 C 1.38816 * 119.99638 * 206.24437 * 16 15 14 19 19 N 1.31612 * 120.00381 * 16.89889 * 18 16 15 20 20 Si 1.86805 * 119.99505 * 196.90379 * 18 16 15 21 21 H 1.48502 * 109.46816 * 59.99963 * 20 18 16 22 22 H 1.48498 * 109.46723 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47387 * 299.99919 * 20 18 16 24 24 C 1.47155 * 118.03150 * 50.53478 * 15 14 12 25 25 C 1.53288 * 108.38704 * 309.46686 * 24 15 14 26 26 O 1.42959 * 109.26878 * 52.27541 * 25 24 15 27 27 N 1.34398 * 108.45796 * 359.97438 * 7 6 5 28 28 N 1.28755 * 109.52558 * 359.75441 * 27 7 6 29 29 H 1.09007 * 109.46500 * 60.00968 * 1 2 3 30 30 H 1.08998 * 109.46815 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47401 * 300.00672 * 1 2 3 32 32 H 1.08997 * 109.47017 * 299.99541 * 3 2 1 33 33 H 1.09001 * 109.47357 * 59.99166 * 3 2 1 34 34 H 1.08998 * 109.46904 * 299.99314 * 4 3 2 35 35 H 1.09001 * 109.47365 * 59.99416 * 4 3 2 36 36 H 1.08003 * 126.58081 * 359.95282 * 6 5 4 37 37 H 0.97005 * 119.99415 * 359.97438 * 10 8 7 38 38 H 1.08994 * 109.47067 * 300.00004 * 11 10 8 39 39 H 1.09006 * 109.46805 * 60.00130 * 11 10 8 40 40 H 1.09000 * 109.68349 * 307.50358 * 14 12 11 41 41 H 1.09004 * 109.68214 * 68.01447 * 14 12 11 42 42 H 0.97001 * 120.00219 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.68147 * 69.19014 * 24 15 14 44 44 H 1.09000 * 109.68251 * 189.70363 * 24 15 14 45 45 H 1.09004 * 109.51383 * 172.22379 * 25 24 15 46 46 H 1.09001 * 109.51147 * 292.38070 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0250 3.0053 0.8868 7 6 5.3065 4.2870 0.5075 8 6 6.2389 5.2035 1.1909 9 8 6.8349 4.8348 2.1846 10 7 6.4295 6.4497 0.7144 11 6 7.3550 7.3600 1.3934 12 6 7.3871 8.6994 0.6546 13 1 7.6342 8.5311 -0.3937 14 6 8.4442 9.6096 1.2900 15 7 8.3267 10.9475 0.6888 16 6 9.4241 11.5921 0.1835 17 1 10.2697 11.0216 -0.1713 18 6 9.4498 12.9789 0.1276 19 7 8.5981 13.6823 0.8433 20 14 10.6930 13.8468 -0.9636 21 1 10.4855 13.4345 -2.3751 22 1 10.5139 15.3162 -0.8462 23 1 12.0673 13.4795 -0.5375 24 6 6.9950 11.5720 0.6460 25 6 6.0084 10.5662 0.0420 26 8 6.1061 9.3272 0.7483 27 7 4.5913 4.5716 -0.5942 28 7 3.8869 3.5464 -0.9267 29 1 -0.3632 0.5137 -0.8902 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 1.6885 1.8465 0.8899 34 1 3.8567 0.6441 0.8909 35 1 3.8575 0.6435 -0.8890 36 1 5.4386 2.4794 1.7345 37 1 5.9538 6.7439 -0.0781 38 1 7.0220 7.5183 2.4190 39 1 8.3543 6.9245 1.3989 40 1 8.2750 9.6739 2.3649 41 1 9.4387 9.2065 1.0985 42 1 8.6163 14.6513 0.8045 43 1 6.6798 11.8340 1.6561 44 1 7.0299 12.4692 0.0281 45 1 4.9937 10.9551 0.1277 46 1 6.2501 10.4054 -1.0087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035367356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:58 Heat of formation + Delta-G solvation = 2.506633 kcal Electronic energy + Delta-G solvation = -28598.330970 eV Core-core repulsion = 24333.822631 eV Total energy + Delta-G solvation = -4264.508339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.52758 -39.47420 -38.67793 -38.33231 -35.37610 -34.88575 -34.24816 -31.70676 -31.41698 -30.82196 -30.07410 -27.55789 -27.04208 -25.66690 -24.56447 -23.55229 -23.06980 -22.17895 -21.69183 -20.52495 -19.61949 -18.40076 -17.30690 -17.03981 -16.84249 -16.34452 -16.10718 -16.08272 -15.82530 -15.47347 -14.99246 -14.82874 -14.73585 -14.34739 -14.22539 -14.07686 -13.73112 -13.19272 -13.03422 -12.96780 -12.69581 -12.67426 -12.33153 -12.25815 -12.03485 -11.59505 -11.46641 -11.10452 -10.82813 -10.78117 -10.71709 -10.41831 -10.38804 -10.28011 -10.19280 -9.95358 -9.63263 -9.61351 -9.03929 -8.94717 -8.52773 -6.74246 -5.83216 -3.26776 0.78496 1.47820 1.51113 3.05681 3.13529 3.23227 3.36380 3.42157 3.43214 3.87882 3.97194 4.13643 4.26950 4.43755 4.45637 4.49478 4.62316 4.70095 4.71987 4.80174 4.93204 5.07776 5.10483 5.16069 5.34203 5.47668 5.52658 5.55896 5.82985 5.87521 5.91891 6.06275 6.19092 6.31066 6.34083 6.40028 6.50909 6.52212 6.77215 7.12531 7.44177 7.53667 7.71387 7.72167 7.89138 8.17963 8.34515 9.12424 9.75247 10.32142 11.24872 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029694 B = 0.001737 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.725809 B =16112.957818 C =16426.556200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.049 3.951 4 C 0.126 3.874 5 N -0.364 5.364 6 C 0.098 3.902 7 C -0.096 4.096 8 C 0.601 3.399 9 O -0.544 6.544 10 N -0.702 5.702 11 C 0.130 3.870 12 C 0.064 3.936 13 H 0.060 0.940 14 C 0.122 3.878 15 N -0.593 5.593 16 C -0.256 4.256 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.903 5.903 20 Si 0.906 3.094 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.389 6.389 27 N -0.198 5.198 28 N -0.064 5.064 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.207 0.793 37 H 0.411 0.589 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.030 0.970 41 H 0.064 0.936 42 H 0.255 0.745 43 H 0.028 0.972 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.050 -26.546 -1.360 30.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.029 4.029 4 C 0.004 3.996 5 N -0.150 5.150 6 C -0.059 4.059 7 C -0.235 4.235 8 C 0.385 3.615 9 O -0.421 6.421 10 N -0.352 5.352 11 C 0.007 3.993 12 C 0.004 3.996 13 H 0.078 0.922 14 C -0.005 4.005 15 N -0.317 5.317 16 C -0.386 4.386 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.735 3.265 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.014 3.986 25 C -0.038 4.038 26 O -0.308 6.308 27 N -0.072 5.072 28 N -0.045 5.045 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.224 0.776 37 H 0.247 0.753 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.048 0.952 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.112 0.888 45 H 0.100 0.900 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.447 -26.460 -1.780 30.200 hybrid contribution 0.786 0.657 -0.169 1.038 sum -13.662 -25.804 -1.949 29.262 Atomic orbital electron populations 1.22817 0.79550 1.03327 1.00610 1.87776 1.20885 1.26426 1.95646 1.22628 0.91862 0.85836 1.02529 1.21687 0.93236 0.77991 1.06649 1.50295 1.30762 1.13656 1.20296 1.23403 0.91908 0.94877 0.95672 1.21550 1.07160 0.95591 0.99174 1.16715 0.80422 0.81256 0.83122 1.90812 1.49324 1.76399 1.25556 1.45759 1.45359 1.12325 1.31761 1.21493 0.93356 0.87294 0.97165 1.22813 0.86588 0.91127 0.99065 0.92222 1.21437 0.96151 0.87226 0.95692 1.44048 1.04362 1.14687 1.68624 1.19161 0.96398 0.88930 1.34069 0.91369 1.25038 0.98725 0.96751 0.99061 1.70021 1.39149 1.05633 1.39890 0.86321 0.81003 0.78462 0.80695 1.20985 1.21565 1.20796 1.21450 0.83090 0.94819 0.99282 1.23323 1.00281 0.85197 0.94998 1.87795 1.31275 1.36968 1.74774 1.74681 1.03699 1.18679 1.10142 1.82012 1.20428 0.90528 1.11496 0.93488 0.88979 0.93629 0.91179 0.92230 0.86657 0.87300 0.77599 0.75287 0.90331 0.89802 0.95184 0.91733 0.93452 0.95375 0.88778 0.90046 0.94051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.39 -2.30 10.70 -35.23 -0.38 -2.68 16 3 C 0.05 0.26 6.15 37.16 0.23 0.49 16 4 C 0.13 0.57 6.91 -4.04 -0.03 0.55 16 5 N -0.36 -2.92 3.69 -61.06 -0.23 -3.15 16 6 C 0.10 0.84 11.27 -16.84 -0.19 0.65 16 7 C -0.10 -1.16 6.99 -83.55 -0.58 -1.74 16 8 C 0.60 8.54 7.82 -12.47 -0.10 8.44 16 9 O -0.54 -8.82 16.86 5.28 0.09 -8.73 16 10 N -0.70 -10.03 5.50 -61.35 -0.34 -10.37 16 11 C 0.13 1.99 5.34 -4.05 -0.02 1.96 16 12 C 0.06 1.13 2.81 -26.58 -0.07 1.06 16 13 H 0.06 1.06 8.14 -51.92 -0.42 0.63 16 14 C 0.12 2.54 6.02 -3.54 -0.02 2.52 16 15 N -0.59 -14.86 3.05 -171.84 -0.52 -15.38 16 16 C -0.26 -6.97 9.65 -15.06 -0.15 -7.12 16 17 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 18 C 0.00 0.08 4.95 -17.43 -0.09 0.00 16 19 N -0.90 -25.98 11.14 55.49 0.62 -25.36 16 20 Si 0.91 21.46 29.59 -169.99 -5.03 16.43 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.14 3.33 5.45 -3.54 -0.02 3.31 16 25 C 0.04 0.78 6.98 37.31 0.26 1.04 16 26 O -0.39 -7.45 10.33 -35.23 -0.36 -7.81 16 27 N -0.20 -2.56 12.04 32.85 0.40 -2.16 16 28 N -0.06 -0.73 13.65 60.35 0.82 0.09 16 29 H 0.05 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.12 0.25 8.08 -51.93 -0.42 -0.17 16 35 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.21 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.41 5.72 8.16 -40.82 -0.33 5.38 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 1.27 7.96 -51.93 -0.41 0.85 16 42 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 2.46 6.14 -51.93 -0.32 2.14 16 45 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -33.82 389.67 -5.68 -39.50 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.95 Total: 1.36 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: 0.33 Total: 12.40 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.75 Total: -56.33 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.65 Total: -19.23 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.82 -5.68 -39.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035367356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.003 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds