Wall clock time and date at job start Sat Apr 11 2020 05:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00375 * 2 1 4 4 C 1.52999 * 109.47077 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47303 * 179.97438 * 4 3 2 6 6 C 1.34811 * 126.59345 * 125.27038 * 5 4 3 7 7 C 1.36604 * 106.83847 * 180.15274 * 6 5 4 8 8 C 1.47519 * 125.77078 * 179.89740 * 7 6 5 9 9 O 1.21602 * 119.99889 * 359.72206 * 8 7 6 10 10 N 1.34771 * 120.00201 * 179.71698 * 8 7 6 11 11 C 1.46503 * 120.00194 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46847 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.50946 * 60.10345 * 12 11 10 14 14 C 1.53717 * 109.48148 * 180.36236 * 12 11 10 15 15 N 1.47154 * 108.16009 * 172.39943 * 14 12 11 16 16 C 1.36931 * 120.97887 * 129.43492 * 15 14 12 17 17 H 1.08005 * 120.00440 * 333.49504 * 16 15 14 18 18 C 1.38821 * 119.99883 * 153.49763 * 16 15 14 19 19 N 1.31619 * 119.99631 * 343.07823 * 18 16 15 20 20 Si 1.86796 * 119.99899 * 162.80446 * 18 16 15 21 21 H 1.48494 * 109.47313 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47337 * 119.99994 * 20 18 16 23 23 H 1.48503 * 109.46949 * 240.00023 * 20 18 16 24 24 C 1.47149 * 118.03579 * 309.15864 * 15 14 12 25 25 C 1.53296 * 108.38694 * 50.78628 * 24 15 14 26 26 O 1.42963 * 109.22250 * 307.69880 * 25 24 15 27 27 N 1.34399 * 108.45692 * 359.63885 * 7 6 5 28 28 N 1.28763 * 109.52479 * 0.22494 * 27 7 6 29 29 H 1.09007 * 109.46608 * 300.00572 * 1 2 3 30 30 H 1.09006 * 109.46690 * 59.99575 * 1 2 3 31 31 H 1.08997 * 109.47548 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47296 * 60.00316 * 3 2 1 33 33 H 1.08998 * 109.47517 * 300.00236 * 3 2 1 34 34 H 1.09007 * 109.47163 * 60.00671 * 4 3 2 35 35 H 1.08989 * 109.47417 * 300.00343 * 4 3 2 36 36 H 1.07998 * 126.58661 * 0.02562 * 6 5 4 37 37 H 0.97001 * 119.99690 * 0.02562 * 10 8 7 38 38 H 1.08999 * 109.46958 * 60.00489 * 11 10 8 39 39 H 1.08997 * 109.46760 * 300.00352 * 11 10 8 40 40 H 1.08999 * 109.83737 * 52.72102 * 14 12 11 41 41 H 1.09001 * 109.74797 * 292.02541 * 14 12 11 42 42 H 0.97003 * 119.99304 * 179.97438 * 19 18 16 43 43 H 1.08993 * 109.68413 * 170.50997 * 24 15 14 44 44 H 1.08997 * 109.68203 * 291.02940 * 24 15 14 45 45 H 1.09004 * 109.50741 * 67.61742 * 25 24 15 46 46 H 1.08993 * 109.51437 * 187.72356 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 0.0006 5 7 4.1315 2.5228 0.0000 6 6 5.0291 3.0032 0.8838 7 6 5.3061 4.2870 0.5081 8 6 6.2385 5.2033 1.1916 9 8 6.8353 4.8341 2.1847 10 7 6.4290 6.4496 0.7153 11 6 7.3555 7.3594 1.3938 12 6 7.3862 8.6995 0.6560 13 1 6.3876 9.1364 0.6530 14 6 8.3650 9.6513 1.3623 15 7 8.5119 10.8572 0.5319 16 6 8.3648 12.1069 1.0717 17 1 7.7473 12.2481 1.9465 18 6 9.0094 13.1926 0.4946 19 7 10.0060 12.9972 -0.3426 20 14 8.4572 14.9303 0.9004 21 1 7.3210 14.8785 1.8550 22 1 9.5849 15.6778 1.5125 23 1 8.0264 15.6161 -0.3443 24 6 8.8277 10.6805 -0.8944 25 6 7.8317 9.6787 -1.4897 26 8 7.8214 8.4936 -0.6902 27 7 4.5899 4.5722 -0.5928 28 7 3.8816 3.5486 -0.9225 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6888 1.8463 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8575 0.6434 -0.8892 35 1 3.8568 0.6437 0.8907 36 1 5.4472 2.4752 1.7280 37 1 5.9528 6.7442 -0.0767 38 1 8.3546 6.9237 1.3983 39 1 7.0233 7.5175 2.4198 40 1 9.3338 9.1657 1.4791 41 1 7.9708 9.9252 2.3409 42 1 10.4561 13.7559 -0.7461 43 1 8.7400 11.6362 -1.4110 44 1 9.8425 10.2973 -1.0010 45 1 6.8347 10.1192 -1.5004 46 1 8.1306 9.4293 -2.5078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035367361.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:01 Heat of formation + Delta-G solvation = 2.448333 kcal Electronic energy + Delta-G solvation = -28602.868599 eV Core-core repulsion = 24338.357732 eV Total energy + Delta-G solvation = -4264.510867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.52120 -39.46743 -38.68150 -38.32055 -35.37235 -34.88272 -34.23807 -31.69652 -31.41199 -30.81960 -30.06627 -27.56248 -27.04555 -25.66089 -24.56580 -23.55608 -23.06208 -22.17461 -21.68195 -20.49988 -19.63573 -18.40073 -17.30914 -17.04162 -16.84304 -16.36278 -16.12137 -16.01935 -15.84519 -15.48029 -14.99081 -14.84548 -14.64088 -14.42754 -14.28328 -13.98757 -13.72918 -13.20820 -13.08693 -12.91437 -12.72453 -12.65305 -12.32720 -12.25489 -12.03757 -11.58836 -11.45947 -11.11654 -10.86064 -10.77678 -10.69017 -10.42219 -10.38893 -10.25212 -10.18600 -9.96431 -9.62781 -9.60875 -9.03821 -8.93356 -8.53579 -6.74423 -5.83751 -3.27312 0.78965 1.48322 1.51464 3.05521 3.13621 3.24263 3.34418 3.42436 3.44598 3.88026 3.97648 4.13377 4.26781 4.43508 4.45703 4.50064 4.62459 4.69939 4.71862 4.79947 4.92897 5.07226 5.10831 5.16765 5.33838 5.47746 5.51912 5.55947 5.82384 5.87396 5.92270 6.06833 6.19282 6.31666 6.33762 6.40172 6.51045 6.52473 6.77098 7.12526 7.45198 7.53797 7.71842 7.73020 7.88920 8.18944 8.34101 9.12060 9.74834 10.31823 11.24246 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027881 B = 0.001733 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.034680 B =16148.631077 C =16336.671272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.050 3.950 4 C 0.126 3.874 5 N -0.364 5.364 6 C 0.098 3.902 7 C -0.095 4.095 8 C 0.601 3.399 9 O -0.544 6.544 10 N -0.701 5.701 11 C 0.131 3.869 12 C 0.064 3.936 13 H 0.060 0.940 14 C 0.122 3.878 15 N -0.594 5.594 16 C -0.255 4.255 17 H 0.070 0.930 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.905 3.095 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.288 1.288 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.389 6.389 27 N -0.198 5.198 28 N -0.064 5.064 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.207 0.793 37 H 0.412 0.588 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.031 0.969 41 H 0.064 0.936 42 H 0.254 0.746 43 H 0.094 0.906 44 H 0.028 0.972 45 H 0.041 0.959 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.320 -25.494 0.518 30.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.150 5.150 6 C -0.059 4.059 7 C -0.235 4.235 8 C 0.385 3.615 9 O -0.422 6.422 10 N -0.351 5.351 11 C 0.007 3.993 12 C 0.004 3.996 13 H 0.078 0.922 14 C -0.005 4.005 15 N -0.318 5.318 16 C -0.384 4.384 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.734 3.266 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.215 1.215 24 C 0.013 3.987 25 C -0.038 4.038 26 O -0.308 6.308 27 N -0.072 5.072 28 N -0.045 5.045 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.224 0.776 37 H 0.248 0.752 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.112 0.888 44 H 0.046 0.954 45 H 0.060 0.940 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.420 -25.565 -0.166 30.384 hybrid contribution -0.179 1.148 0.652 1.332 sum -16.599 -24.417 0.486 29.529 Atomic orbital electron populations 1.22818 0.79560 1.03330 1.00592 1.87776 1.20873 1.26430 1.95641 1.22623 0.91867 0.85833 1.02503 1.21688 0.93221 0.78007 1.06662 1.50295 1.30547 1.13591 1.20578 1.23402 0.91927 0.94852 0.95692 1.21552 1.07201 0.95585 0.99126 1.16717 0.80427 0.81240 0.83160 1.90811 1.49305 1.76244 1.25790 1.45732 1.45086 1.12557 1.31733 1.21508 0.93858 0.88252 0.95686 1.22905 0.98595 0.93913 0.84205 0.92204 1.21531 0.96059 0.88556 0.94376 1.44085 1.83032 1.00759 1.03879 1.19248 1.23069 0.83433 1.12654 0.91273 1.25053 0.95823 0.98558 1.00232 1.70047 1.21285 1.29754 1.33579 0.86185 0.78100 0.84560 0.77708 1.20213 1.21647 1.21499 1.21448 0.94208 0.98055 0.84941 1.23319 0.99988 0.86743 0.93710 1.87787 1.88314 1.33106 1.21594 1.74685 1.03687 1.18851 1.09945 1.82014 1.20312 0.90523 1.11632 0.93642 0.93497 0.88973 0.92260 0.91174 0.87295 0.86659 0.77606 0.75204 0.90388 0.89871 0.95143 0.91730 0.93559 0.88796 0.95369 0.94047 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 11.01 101.05 1.11 1.24 16 2 O -0.39 -2.29 10.70 -35.23 -0.38 -2.66 16 3 C 0.05 0.26 6.14 37.16 0.23 0.49 16 4 C 0.13 0.58 6.91 -4.04 -0.03 0.55 16 5 N -0.36 -2.93 3.69 -61.06 -0.23 -3.16 16 6 C 0.10 0.85 11.27 -16.83 -0.19 0.66 16 7 C -0.10 -1.16 6.99 -83.55 -0.58 -1.74 16 8 C 0.60 8.56 7.82 -12.48 -0.10 8.46 16 9 O -0.54 -8.84 16.86 5.28 0.09 -8.76 16 10 N -0.70 -10.06 5.45 -61.35 -0.33 -10.40 16 11 C 0.13 1.98 5.37 -4.04 -0.02 1.96 16 12 C 0.06 1.13 2.88 -26.36 -0.08 1.05 16 13 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 14 C 0.12 2.54 6.05 -3.31 -0.02 2.52 16 15 N -0.59 -14.85 3.04 -171.57 -0.52 -15.37 16 16 C -0.25 -6.92 9.65 -15.06 -0.15 -7.06 16 17 H 0.07 1.83 7.89 -52.48 -0.41 1.42 16 18 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 19 N -0.90 -25.98 11.14 55.49 0.62 -25.37 16 20 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 C 0.14 3.33 5.44 -3.53 -0.02 3.31 16 25 C 0.04 0.78 6.99 37.31 0.26 1.05 16 26 O -0.39 -7.43 10.13 -35.23 -0.36 -7.79 16 27 N -0.20 -2.57 12.04 32.85 0.40 -2.17 16 28 N -0.06 -0.74 13.65 60.35 0.82 0.09 16 29 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.12 0.25 8.08 -51.94 -0.42 -0.17 16 36 H 0.21 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.41 5.78 8.03 -40.82 -0.33 5.46 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.09 2.46 6.14 -51.93 -0.32 2.14 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 389.39 15.07 5.87 5.87 Total: -1.00 -33.85 389.39 -5.67 -39.51 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.95 Total: 1.34 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 0.33 Total: 12.43 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.76 Total: -56.37 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.64 Total: -19.20 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.85 -5.67 -39.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035367361.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.962 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds