Wall clock time and date at job start Sat Apr 11 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35474 * 124.78713 * 2 1 4 4 C 1.36375 * 109.76923 * 180.14402 * 3 2 1 5 5 C 1.46910 * 126.76898 * 179.82866 * 4 3 2 6 6 O 1.21672 * 120.00026 * 155.87840 * 5 4 3 7 7 N 1.34777 * 119.99953 * 335.88052 * 5 4 3 8 8 C 1.46656 * 125.33783 * 174.26379 * 7 5 4 9 9 C 1.53666 * 107.97437 * 179.29309 * 8 7 5 10 10 H 1.09005 * 113.32206 * 106.33352 * 9 8 7 11 11 C 1.53982 * 109.29973 * 233.06246 * 9 8 7 12 12 N 1.46765 * 106.67802 * 82.33943 * 11 9 8 13 13 C 1.36938 * 125.33468 * 198.43604 * 12 11 9 14 14 H 1.07992 * 119.99726 * 173.88561 * 13 12 11 15 15 C 1.38810 * 120.00020 * 353.87525 * 13 12 11 16 16 N 1.31621 * 120.00221 * 4.74467 * 15 13 12 17 17 Si 1.86796 * 120.00027 * 184.73663 * 15 13 12 18 18 H 1.48510 * 109.47041 * 95.00313 * 17 15 13 19 19 H 1.48499 * 109.47452 * 215.00133 * 17 15 13 20 20 H 1.48497 * 109.47302 * 335.00866 * 17 15 13 21 21 C 1.46661 * 109.32938 * 18.45272 * 12 11 9 22 22 C 1.53683 * 107.96888 * 359.29210 * 21 12 11 23 23 H 1.08996 * 112.77085 * 106.01405 * 22 21 12 24 24 C 1.46757 * 125.33288 * 354.26701 * 7 5 4 25 25 C 1.47440 * 106.46011 * 359.56810 * 4 3 2 26 26 C 1.39283 * 134.00521 * 180.25972 * 25 4 3 27 27 C 1.37750 * 119.67188 * 179.97438 * 26 25 4 28 28 C 1.38754 * 120.30044 * 0.02562 * 27 26 25 29 29 C 1.37762 * 120.63463 * 0.02562 * 28 27 26 30 30 C 1.37961 * 124.78560 * 179.64932 * 2 1 3 31 31 H 1.08997 * 109.47129 * 270.34903 * 1 2 3 32 32 H 1.09001 * 109.47466 * 30.35154 * 1 2 3 33 33 H 1.09006 * 109.47161 * 150.34947 * 1 2 3 34 34 H 1.08001 * 125.11244 * 359.97438 * 3 2 1 35 35 H 1.09004 * 109.76373 * 59.66126 * 8 7 5 36 36 H 1.09005 * 109.76930 * 298.92491 * 8 7 5 37 37 H 1.09007 * 110.01655 * 323.03759 * 11 9 8 38 38 H 1.08992 * 110.02025 * 201.64793 * 11 9 8 39 39 H 0.96997 * 120.00000 * 179.97438 * 16 15 13 40 40 H 1.08993 * 109.76878 * 239.66624 * 21 12 11 41 41 H 1.08997 * 109.76620 * 118.91807 * 21 12 11 42 42 H 1.09003 * 110.02216 * 79.14477 * 24 7 5 43 43 H 1.08998 * 110.02069 * 317.75170 * 24 7 5 44 44 H 1.08004 * 120.16289 * 0.02562 * 26 25 4 45 45 H 1.08004 * 119.85123 * 180.02562 * 27 26 25 46 46 H 1.08010 * 119.68327 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.03420 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2379 1.1126 0.0000 4 6 3.5550 0.7592 -0.0032 5 6 4.7093 1.6680 -0.0078 6 8 5.7834 1.2893 0.4203 7 7 4.5784 2.9212 -0.4862 8 6 5.6129 3.9597 -0.4385 9 6 5.0486 5.2221 -1.1088 10 1 4.7935 6.0099 -0.3999 11 6 6.0233 5.6965 -2.2025 12 7 5.7413 4.8907 -3.3963 13 6 6.5866 4.7309 -4.4617 14 1 6.3344 4.0394 -5.2520 15 6 7.7674 5.4577 -4.5260 16 7 8.1204 6.2300 -3.5203 17 14 8.8556 5.3397 -6.0397 18 1 8.5347 6.4536 -6.9681 19 1 10.2809 5.4295 -5.6330 20 1 8.6161 4.0425 -6.7216 21 6 4.4121 4.2840 -3.2696 22 6 3.8227 4.7117 -1.9163 23 1 3.0368 5.4603 -2.0161 24 6 3.3784 3.4604 -1.1365 25 6 3.5922 -0.7147 0.0052 26 6 4.6181 -1.6567 0.0112 27 6 4.3108 -2.9995 0.0192 28 6 2.9868 -3.4147 0.0209 29 6 1.9623 -2.4937 0.0141 30 6 2.2520 -1.1330 0.0069 31 1 -0.3633 0.0063 1.0276 32 1 -0.3634 0.8868 -0.5193 33 1 -0.3634 -0.8931 -0.5084 34 1 1.8667 2.1268 -0.0004 35 1 6.4993 3.6220 -0.9755 36 1 5.8701 4.1765 0.5983 37 1 7.0523 5.5377 -1.8797 38 1 5.8580 6.7522 -2.4173 39 1 8.9457 6.7376 -3.5651 40 1 4.4974 3.1980 -3.3078 41 1 3.7694 4.6321 -4.0781 42 1 2.6372 3.7328 -0.3851 43 1 2.9617 2.7223 -1.8218 44 1 5.6494 -1.3360 0.0103 45 1 5.1040 -3.7325 0.0243 46 1 2.7572 -4.4701 0.0269 47 1 0.9352 -2.8276 0.0151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048923335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:06 Heat of formation + Delta-G solvation = 70.534779 kcal Electronic energy + Delta-G solvation = -29563.333365 eV Core-core repulsion = 25712.624211 eV Total energy + Delta-G solvation = -3850.709154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.64965 -39.91240 -37.83438 -37.22622 -34.86257 -33.12924 -32.14524 -30.43900 -30.35351 -29.64011 -28.97595 -27.08912 -25.53923 -25.26726 -23.52754 -22.72037 -21.78468 -21.04263 -20.00652 -19.34795 -19.09214 -17.45685 -16.82845 -16.61638 -15.98921 -15.89311 -15.60759 -15.48409 -14.83464 -14.62337 -14.20282 -14.06012 -13.89762 -13.64644 -13.14402 -13.05902 -12.98209 -12.77565 -12.70392 -12.52424 -12.05892 -11.88128 -11.71331 -11.58610 -11.44953 -11.29086 -11.04381 -10.91669 -10.79762 -10.39603 -10.08186 -9.95801 -9.83781 -9.72386 -9.63949 -9.54911 -8.59682 -8.37946 -8.24430 -7.76233 -6.79485 -5.68891 -3.05182 0.92417 1.46793 2.03599 2.47453 3.27441 3.42298 3.47749 3.49870 3.52629 3.91832 4.36223 4.44220 4.50625 4.56537 4.73787 4.78571 4.82070 4.95622 5.01463 5.06382 5.18361 5.23906 5.34380 5.42673 5.50014 5.52199 5.60520 5.60945 5.70945 5.75316 5.82902 5.95795 5.97549 6.17208 6.31331 6.34974 6.44644 6.47086 6.57909 6.58786 6.66600 6.75701 6.79090 6.85543 6.97062 7.04103 7.48956 7.62891 7.83341 7.89321 8.32705 8.56386 9.24148 9.84711 10.48357 11.39883 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.003003 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.574566 B = 9320.938727 C =10011.456537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.476 5.476 3 C 0.097 3.903 4 C -0.213 4.213 5 C 0.601 3.399 6 O -0.542 6.542 7 N -0.605 5.605 8 C 0.124 3.876 9 C -0.124 4.124 10 H 0.088 0.912 11 C 0.176 3.824 12 N -0.599 5.599 13 C -0.226 4.226 14 H 0.077 0.923 15 C -0.007 4.007 16 N -0.921 5.921 17 Si 0.912 3.088 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.145 3.855 22 C -0.110 4.110 23 H 0.097 0.903 24 C 0.110 3.890 25 C -0.063 4.063 26 C -0.060 4.060 27 C -0.145 4.145 28 C -0.101 4.101 29 C -0.129 4.129 30 C 0.087 3.913 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.180 0.820 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.022 0.978 39 H 0.252 0.748 40 H 0.023 0.977 41 H 0.022 0.978 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.132 0.868 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.869 -12.346 9.637 24.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.158 5.158 3 C -0.033 4.033 4 C -0.224 4.224 5 C 0.391 3.609 6 O -0.420 6.420 7 N -0.339 5.339 8 C 0.002 3.998 9 C -0.144 4.144 10 H 0.106 0.894 11 C 0.050 3.950 12 N -0.326 5.326 13 C -0.354 4.354 14 H 0.094 0.906 15 C -0.203 4.203 16 N -0.568 5.568 17 Si 0.743 3.257 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.206 1.206 21 C 0.018 3.982 22 C -0.129 4.129 23 H 0.115 0.885 24 C -0.014 4.014 25 C -0.068 4.068 26 C -0.078 4.078 27 C -0.164 4.164 28 C -0.120 4.120 29 C -0.150 4.150 30 C -0.017 4.017 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.197 0.803 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.040 0.960 39 H 0.063 0.937 40 H 0.041 0.959 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.150 0.850 45 H 0.142 0.858 46 H 0.142 0.858 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.417 -12.543 9.812 24.347 hybrid contribution 0.325 0.144 -0.851 0.922 sum -18.092 -12.400 8.961 23.693 Atomic orbital electron populations 1.22033 0.76706 1.04628 1.03279 1.43578 1.06249 1.04320 1.61691 1.22368 0.89878 0.91544 0.99487 1.20022 0.92148 0.92390 1.17792 1.16807 0.87017 0.79499 0.77600 1.90774 1.27977 1.74970 1.48324 1.48051 1.16013 1.11314 1.58481 1.21841 0.91661 0.86313 0.99967 1.23218 0.96784 0.96022 0.98404 0.89378 1.21336 0.97291 0.93125 0.83218 1.44189 1.13088 1.56354 1.18925 1.19037 0.99391 1.19295 0.97711 0.90557 1.24790 0.98381 0.98966 0.98196 1.69900 1.24492 1.32558 1.29899 0.86084 0.79863 0.77558 0.82200 1.21665 1.21697 1.20646 1.21131 0.88054 0.96081 0.92896 1.22849 0.98035 0.95628 0.96400 0.88499 1.22113 0.87751 0.96137 0.95375 1.18758 0.92135 0.91507 1.04363 1.20714 0.99066 0.91628 0.96431 1.20961 0.96401 0.95390 1.03612 1.20794 0.92303 0.98747 1.00164 1.19939 0.99459 0.88878 1.06716 1.18247 0.89723 0.88241 1.05496 0.90983 0.89468 0.89802 0.80323 0.90163 0.92412 0.89364 0.95953 0.93700 0.95944 0.96052 0.92405 0.90896 0.85031 0.85782 0.85753 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 10.98 59.84 0.66 1.05 16 2 N -0.48 -4.80 3.14 -121.60 -0.38 -5.18 16 3 C 0.10 1.10 9.58 -16.62 -0.16 0.94 16 4 C -0.21 -3.27 5.95 -103.31 -0.61 -3.88 16 5 C 0.60 11.07 7.77 -12.75 -0.10 10.97 16 6 O -0.54 -11.95 17.00 5.21 0.09 -11.86 16 7 N -0.61 -10.33 3.31 -173.79 -0.57 -10.90 16 8 C 0.12 2.32 6.24 -3.61 -0.02 2.30 16 9 C -0.12 -2.21 4.09 -88.48 -0.36 -2.57 16 10 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 11 C 0.18 4.13 4.71 -3.39 -0.02 4.11 16 12 N -0.60 -15.17 3.38 -171.88 -0.58 -15.75 16 13 C -0.23 -6.35 10.24 -15.06 -0.15 -6.50 16 14 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 15 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 16 N -0.92 -26.85 10.26 55.49 0.57 -26.28 16 17 Si 0.91 22.39 29.56 -169.99 -5.02 17.37 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 C 0.14 2.94 6.63 -3.60 -0.02 2.92 16 22 C -0.11 -1.73 4.09 -88.47 -0.36 -2.09 16 23 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 24 C 0.11 1.48 4.40 -3.39 -0.01 1.46 16 25 C -0.06 -0.96 6.29 -104.95 -0.66 -1.62 16 26 C -0.06 -0.88 9.99 -39.37 -0.39 -1.27 16 27 C -0.14 -1.67 10.03 -39.57 -0.40 -2.07 16 28 C -0.10 -1.01 10.01 -39.56 -0.40 -1.40 16 29 C -0.13 -1.32 9.91 -39.43 -0.39 -1.71 16 30 C 0.09 1.07 6.79 -83.97 -0.57 0.50 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.30 8.13 -51.93 -0.42 -0.12 16 33 H 0.08 0.35 8.03 -51.93 -0.42 -0.07 16 34 H 0.18 1.48 5.61 -52.49 -0.29 1.19 16 35 H 0.08 1.83 7.47 -51.93 -0.39 1.44 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.09 2.36 6.10 -51.92 -0.32 2.05 16 38 H 0.02 0.57 8.11 -51.93 -0.42 0.15 16 39 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.02 0.48 7.47 -51.93 -0.39 0.10 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.58 6.86 -51.93 -0.36 0.23 16 43 H 0.07 0.94 6.91 -51.93 -0.36 0.58 16 44 H 0.13 2.07 7.81 -52.48 -0.41 1.66 16 45 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 46 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 47 H 0.12 0.86 8.01 -52.49 -0.42 0.44 16 LS Contribution 374.62 15.07 5.65 5.65 Total: -1.00 -35.31 374.62 -11.03 -46.34 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.70 Total: -0.21 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -4.07 Total: 0.83 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.97 Total: -58.11 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.31 -11.03 -46.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048923335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.870 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds