Wall clock time and date at job start Sat Apr 11 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35474 * 124.78713 * 2 1 4 4 C 1.36375 * 109.76923 * 180.14402 * 3 2 1 5 5 C 1.46910 * 126.76898 * 179.82866 * 4 3 2 6 6 O 1.21672 * 120.00026 * 155.87840 * 5 4 3 7 7 N 1.34777 * 119.99953 * 335.88052 * 5 4 3 8 8 C 1.46656 * 125.33783 * 174.26379 * 7 5 4 9 9 C 1.53666 * 107.97437 * 179.29309 * 8 7 5 10 10 H 1.09005 * 113.32206 * 106.33352 * 9 8 7 11 11 C 1.53982 * 109.29973 * 233.06246 * 9 8 7 12 12 N 1.46765 * 106.67802 * 82.33943 * 11 9 8 13 13 C 1.36938 * 125.33468 * 198.43604 * 12 11 9 14 14 H 1.07992 * 119.99726 * 173.88561 * 13 12 11 15 15 C 1.38810 * 120.00020 * 353.87525 * 13 12 11 16 16 N 1.31621 * 120.00221 * 4.74467 * 15 13 12 17 17 Si 1.86796 * 120.00027 * 184.73663 * 15 13 12 18 18 H 1.48510 * 109.47041 * 95.00313 * 17 15 13 19 19 H 1.48499 * 109.47452 * 215.00133 * 17 15 13 20 20 H 1.48497 * 109.47302 * 335.00866 * 17 15 13 21 21 C 1.46661 * 109.32938 * 18.45272 * 12 11 9 22 22 C 1.53683 * 107.96888 * 359.29210 * 21 12 11 23 23 H 1.08996 * 112.77085 * 106.01405 * 22 21 12 24 24 C 1.46757 * 125.33288 * 354.26701 * 7 5 4 25 25 C 1.47440 * 106.46011 * 359.56810 * 4 3 2 26 26 C 1.39283 * 134.00521 * 180.25972 * 25 4 3 27 27 C 1.37750 * 119.67188 * 179.97438 * 26 25 4 28 28 C 1.38754 * 120.30044 * 0.02562 * 27 26 25 29 29 C 1.37762 * 120.63463 * 0.02562 * 28 27 26 30 30 C 1.37961 * 124.78560 * 179.64932 * 2 1 3 31 31 H 1.08997 * 109.47129 * 270.34903 * 1 2 3 32 32 H 1.09001 * 109.47466 * 30.35154 * 1 2 3 33 33 H 1.09006 * 109.47161 * 150.34947 * 1 2 3 34 34 H 1.08001 * 125.11244 * 359.97438 * 3 2 1 35 35 H 1.09004 * 109.76373 * 59.66126 * 8 7 5 36 36 H 1.09005 * 109.76930 * 298.92491 * 8 7 5 37 37 H 1.09007 * 110.01655 * 323.03759 * 11 9 8 38 38 H 1.08992 * 110.02025 * 201.64793 * 11 9 8 39 39 H 0.96997 * 120.00000 * 179.97438 * 16 15 13 40 40 H 1.08993 * 109.76878 * 239.66624 * 21 12 11 41 41 H 1.08997 * 109.76620 * 118.91807 * 21 12 11 42 42 H 1.09003 * 110.02216 * 79.14477 * 24 7 5 43 43 H 1.08998 * 110.02069 * 317.75170 * 24 7 5 44 44 H 1.08004 * 120.16289 * 0.02562 * 26 25 4 45 45 H 1.08004 * 119.85123 * 180.02562 * 27 26 25 46 46 H 1.08010 * 119.68327 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.03420 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2379 1.1126 0.0000 4 6 3.5550 0.7592 -0.0032 5 6 4.7093 1.6680 -0.0078 6 8 5.7834 1.2893 0.4203 7 7 4.5784 2.9212 -0.4862 8 6 5.6129 3.9597 -0.4385 9 6 5.0486 5.2221 -1.1088 10 1 4.7935 6.0099 -0.3999 11 6 6.0233 5.6965 -2.2025 12 7 5.7413 4.8907 -3.3963 13 6 6.5866 4.7309 -4.4617 14 1 6.3344 4.0394 -5.2520 15 6 7.7674 5.4577 -4.5260 16 7 8.1204 6.2300 -3.5203 17 14 8.8556 5.3397 -6.0397 18 1 8.5347 6.4536 -6.9681 19 1 10.2809 5.4295 -5.6330 20 1 8.6161 4.0425 -6.7216 21 6 4.4121 4.2840 -3.2696 22 6 3.8227 4.7117 -1.9163 23 1 3.0368 5.4603 -2.0161 24 6 3.3784 3.4604 -1.1365 25 6 3.5922 -0.7147 0.0052 26 6 4.6181 -1.6567 0.0112 27 6 4.3108 -2.9995 0.0192 28 6 2.9868 -3.4147 0.0209 29 6 1.9623 -2.4937 0.0141 30 6 2.2520 -1.1330 0.0069 31 1 -0.3633 0.0063 1.0276 32 1 -0.3634 0.8868 -0.5193 33 1 -0.3634 -0.8931 -0.5084 34 1 1.8667 2.1268 -0.0004 35 1 6.4993 3.6220 -0.9755 36 1 5.8701 4.1765 0.5983 37 1 7.0523 5.5377 -1.8797 38 1 5.8580 6.7522 -2.4173 39 1 8.9457 6.7376 -3.5651 40 1 4.4974 3.1980 -3.3078 41 1 3.7694 4.6321 -4.0781 42 1 2.6372 3.7328 -0.3851 43 1 2.9617 2.7223 -1.8218 44 1 5.6494 -1.3360 0.0103 45 1 5.1040 -3.7325 0.0243 46 1 2.7572 -4.4701 0.0269 47 1 0.9352 -2.8276 0.0151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048923335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:06 Heat of formation + Delta-G solvation = 48.111475 kcal Electronic energy + Delta-G solvation = -29564.305713 eV Core-core repulsion = 25712.624211 eV Total energy + Delta-G solvation = -3851.681501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.55016 -41.29162 -39.33183 -38.06642 -36.56170 -34.24988 -33.75712 -31.86985 -31.32051 -31.20969 -29.98330 -28.06376 -27.21461 -26.70695 -24.95010 -23.69308 -22.87897 -22.08558 -21.61038 -20.83010 -20.27736 -18.95515 -18.24616 -17.66047 -17.29726 -16.91976 -16.80374 -16.52844 -16.31079 -15.86976 -15.65344 -15.47556 -14.87667 -14.82692 -14.55739 -14.24829 -14.18094 -13.79463 -13.69040 -13.66112 -13.46312 -13.30831 -13.12767 -13.01075 -12.76880 -12.73759 -12.56110 -12.23262 -12.02616 -11.95203 -11.90528 -11.69416 -11.50257 -11.39713 -11.02108 -10.71543 -10.62663 -9.62916 -9.24947 -8.85571 -8.66233 -7.85127 -5.22939 0.01404 0.56639 1.02484 1.42275 1.44243 1.53003 1.72901 2.02281 2.35839 2.47112 2.94695 3.28307 3.41564 3.54416 3.67198 3.69560 3.75431 3.89101 3.97119 4.10856 4.21496 4.24593 4.30458 4.32946 4.50515 4.52225 4.53292 4.57285 4.62823 4.70416 4.78487 4.81037 4.83053 4.87413 4.91434 5.04684 5.08836 5.17721 5.33127 5.38127 5.45316 5.47911 5.57453 5.59831 5.69713 5.70261 5.80278 6.13837 6.25816 6.26713 6.59772 7.10623 7.22105 7.79785 8.40423 9.21477 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.003003 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.574566 B = 9320.938727 C =10011.456537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.466 5.466 3 C 0.137 3.863 4 C -0.270 4.270 5 C 0.594 3.406 6 O -0.603 6.603 7 N -0.607 5.607 8 C 0.130 3.870 9 C -0.107 4.107 10 H 0.128 0.872 11 C 0.181 3.819 12 N -0.623 5.623 13 C -0.243 4.243 14 H 0.074 0.926 15 C -0.063 4.063 16 N -0.945 5.945 17 Si 0.976 3.024 18 H -0.281 1.281 19 H -0.295 1.295 20 H -0.273 1.273 21 C 0.137 3.863 22 C -0.092 4.092 23 H 0.142 0.858 24 C 0.110 3.890 25 C -0.098 4.098 26 C -0.106 4.106 27 C -0.140 4.140 28 C -0.104 4.104 29 C -0.116 4.116 30 C 0.075 3.925 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.219 0.781 35 H 0.020 0.980 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.001 0.999 39 H 0.247 0.753 40 H 0.006 0.994 41 H 0.032 0.968 42 H 0.116 0.884 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.139 0.861 46 H 0.161 0.839 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.576 -13.169 9.931 29.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.145 5.145 3 C 0.004 3.996 4 C -0.280 4.280 5 C 0.386 3.614 6 O -0.485 6.485 7 N -0.339 5.339 8 C 0.007 3.993 9 C -0.127 4.127 10 H 0.146 0.854 11 C 0.056 3.944 12 N -0.349 5.349 13 C -0.373 4.373 14 H 0.092 0.908 15 C -0.257 4.257 16 N -0.594 5.594 17 Si 0.804 3.196 18 H -0.208 1.208 19 H -0.222 1.222 20 H -0.198 1.198 21 C 0.012 3.988 22 C -0.111 4.111 23 H 0.160 0.840 24 C -0.012 4.012 25 C -0.102 4.102 26 C -0.125 4.125 27 C -0.159 4.159 28 C -0.123 4.123 29 C -0.136 4.136 30 C -0.030 4.030 31 H 0.108 0.892 32 H 0.132 0.868 33 H 0.117 0.883 34 H 0.235 0.765 35 H 0.039 0.961 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.019 0.981 39 H 0.057 0.943 40 H 0.024 0.976 41 H 0.050 0.950 42 H 0.133 0.867 43 H 0.103 0.897 44 H 0.113 0.887 45 H 0.157 0.843 46 H 0.179 0.821 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -24.217 -13.387 10.090 29.453 hybrid contribution 2.045 0.293 -0.962 2.279 sum -22.172 -13.094 9.128 27.320 Atomic orbital electron populations 1.22496 0.73116 1.06810 1.05128 1.43937 1.08127 1.03091 1.59385 1.22765 0.88295 0.93278 0.95292 1.19821 0.92806 0.92130 1.23250 1.17427 0.87402 0.79917 0.76605 1.90721 1.30591 1.76093 1.51144 1.48116 1.16711 1.10703 1.58391 1.21562 0.90681 0.87431 0.99589 1.23074 0.96124 0.96124 0.97397 0.85401 1.21067 0.96755 0.91983 0.84626 1.44497 1.14920 1.56688 1.18794 1.19366 1.00282 1.19054 0.98562 0.90831 1.25607 0.99848 0.99238 1.00963 1.70144 1.24578 1.33328 1.31391 0.85102 0.77607 0.77878 0.79015 1.20797 1.22152 1.19832 1.21374 0.86198 0.94819 0.96427 1.22933 0.97714 0.97542 0.92937 0.83991 1.22415 0.87100 0.95003 0.96656 1.19100 0.93925 0.91855 1.05333 1.20661 0.97783 0.93574 1.00481 1.21227 0.98304 0.94231 1.02134 1.21220 0.91158 1.00735 0.99177 1.20428 1.01384 0.87784 1.03982 1.18465 0.88771 0.89772 1.05945 0.89224 0.86819 0.88302 0.76512 0.96095 0.91647 0.93920 0.98127 0.94342 0.97591 0.95017 0.86656 0.89745 0.88716 0.84348 0.82100 0.82470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.28 10.98 127.77 1.40 1.68 16 2 N -0.47 -7.38 3.14 -538.63 -1.69 -9.07 16 3 C 0.14 2.60 9.58 83.70 0.80 3.40 16 4 C -0.27 -8.29 5.95 -19.02 -0.11 -8.40 16 5 C 0.59 23.04 7.77 86.51 0.67 23.72 16 6 O -0.60 -29.44 17.00 -4.26 -0.07 -29.52 16 7 N -0.61 -20.73 3.31 -821.98 -2.72 -23.44 16 8 C 0.13 5.10 6.24 86.57 0.54 5.64 16 9 C -0.11 -3.73 4.09 -9.41 -0.04 -3.77 16 10 H 0.13 3.51 8.14 -2.38 -0.02 3.49 16 11 C 0.18 8.89 4.71 86.66 0.41 9.30 16 12 N -0.62 -32.68 3.38 -697.70 -2.35 -35.03 16 13 C -0.24 -14.25 10.24 84.03 0.86 -13.39 16 14 H 0.07 4.21 7.83 -2.91 -0.02 4.18 16 15 C -0.06 -3.74 5.48 84.86 0.47 -3.27 16 16 N -0.95 -58.13 10.26 21.65 0.22 -57.91 16 17 Si 0.98 47.70 29.56 68.60 2.03 49.73 16 18 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 19 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 20 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 21 C 0.14 5.51 6.63 86.58 0.57 6.08 16 22 C -0.09 -2.61 4.09 -9.40 -0.04 -2.65 16 23 H 0.14 2.90 8.14 -2.39 -0.02 2.88 16 24 C 0.11 2.53 4.40 86.66 0.38 2.92 16 25 C -0.10 -3.05 6.29 -20.08 -0.13 -3.18 16 26 C -0.11 -3.41 9.99 22.41 0.22 -3.19 16 27 C -0.14 -3.30 10.03 22.28 0.22 -3.08 16 28 C -0.10 -1.80 10.01 22.28 0.22 -1.58 16 29 C -0.12 -1.93 9.91 22.37 0.22 -1.71 16 30 C 0.07 1.66 6.79 38.91 0.26 1.92 16 31 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.11 -0.03 8.13 -2.39 -0.02 -0.05 16 33 H 0.10 0.20 8.03 -2.38 -0.02 0.18 16 34 H 0.22 2.19 5.61 -2.91 -0.02 2.17 16 35 H 0.02 1.05 7.47 -2.39 -0.02 1.03 16 36 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 37 H 0.04 2.47 6.10 -2.38 -0.01 2.46 16 38 H 0.00 0.04 8.11 -2.39 -0.02 0.02 16 39 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 40 H 0.01 0.26 7.47 -2.39 -0.02 0.25 16 41 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.12 1.48 6.86 -2.39 -0.02 1.46 16 43 H 0.08 1.83 6.91 -2.39 -0.02 1.81 16 44 H 0.09 3.56 7.81 -2.91 -0.02 3.54 16 45 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 46 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 47 H 0.16 1.36 8.01 -2.91 -0.02 1.34 16 Total: -1.00 -90.01 374.62 3.34 -86.68 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 0.98 Total: 8.13 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 6.95 Total: 10.43 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -6.54 Total: -125.46 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.07 Total: -29.52 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -90.01 3.34 -86.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048923335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.788 kcal (2) G-P(sol) polarization free energy of solvation -90.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds