Wall clock time and date at job start Sat Apr 11 2020 05:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35532 * 125.67862 * 2 1 4 4 C 1.35455 * 108.86807 * 180.29995 * 3 2 1 5 5 C 1.39833 * 107.86790 * 359.73507 * 4 3 2 6 6 C 1.37654 * 125.67422 * 179.84671 * 2 1 3 7 7 C 1.46677 * 126.23747 * 359.96104 * 6 2 1 8 8 O 1.21695 * 119.99880 * 354.50736 * 7 6 2 9 9 N 1.34771 * 119.99828 * 174.50377 * 7 6 2 10 10 C 1.46501 * 119.99998 * 184.65358 * 9 7 6 11 11 C 1.50698 * 109.47684 * 180.02562 * 10 9 7 12 12 C 1.37954 * 119.71123 * 260.00192 * 11 10 9 13 13 C 1.38220 * 119.83054 * 180.02562 * 12 11 10 14 14 C 1.38002 * 119.71483 * 0.26595 * 13 12 11 15 15 C 1.38794 * 120.50512 * 359.83506 * 14 13 12 16 16 C 1.37713 * 119.84565 * 359.44473 * 15 14 13 17 17 C 1.50596 * 122.84751 * 181.01892 * 16 15 14 18 18 C 1.52791 * 110.92364 * 340.15645 * 17 16 15 19 19 N 1.47224 * 107.91298 * 47.31913 * 18 17 16 20 20 C 1.36929 * 121.32938 * 115.77532 * 19 18 17 21 21 H 1.08001 * 120.00479 * 339.23908 * 20 19 18 22 22 C 1.38818 * 120.00098 * 159.24006 * 20 19 18 23 23 N 1.31613 * 119.99623 * 344.96085 * 22 20 19 24 24 Si 1.86800 * 119.99901 * 164.96784 * 22 20 19 25 25 H 1.48496 * 109.47451 * 59.99841 * 24 22 20 26 26 H 1.48505 * 109.46995 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47244 * 299.99479 * 24 22 20 28 28 C 1.46685 * 117.34497 * 295.80702 * 19 18 17 29 29 H 1.08996 * 109.47252 * 264.19476 * 1 2 3 30 30 H 1.08994 * 109.47118 * 24.19626 * 1 2 3 31 31 H 1.09004 * 109.47123 * 144.19903 * 1 2 3 32 32 H 1.07992 * 125.56568 * 0.07775 * 3 2 1 33 33 H 1.08004 * 126.06148 * 179.69838 * 4 3 2 34 34 H 1.07997 * 126.45739 * 180.02562 * 5 4 3 35 35 H 0.97005 * 120.00670 * 4.65029 * 9 7 6 36 36 H 1.09004 * 109.47053 * 60.00039 * 10 9 7 37 37 H 1.08997 * 109.47292 * 300.00301 * 10 9 7 38 38 H 1.08003 * 120.08470 * 0.10232 * 12 11 10 39 39 H 1.07999 * 120.14646 * 180.28088 * 13 12 11 40 40 H 1.08004 * 119.75080 * 179.85674 * 14 13 12 41 41 H 1.08999 * 109.33820 * 219.66792 * 17 16 15 42 42 H 1.08998 * 108.95284 * 100.39059 * 17 16 15 43 43 H 1.09003 * 109.77564 * 287.71548 * 18 17 16 44 44 H 1.09002 * 109.77300 * 166.92349 * 18 17 16 45 45 H 0.97005 * 119.99691 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.43068 * 284.32425 * 28 19 18 47 47 H 1.09001 * 109.43514 * 164.45851 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7092 -0.0067 5 6 3.5780 -0.6889 -0.0049 6 6 2.2678 -1.1182 0.0030 7 6 1.8124 -2.5125 0.0075 8 8 0.6263 -2.7648 0.1098 9 7 2.7075 -3.5141 -0.1017 10 6 2.2463 -4.9012 -0.1998 11 6 3.4360 -5.8195 -0.3108 12 6 3.8120 -6.3050 -1.5462 13 6 4.9025 -7.1479 -1.6508 14 6 5.6044 -7.5023 -0.5167 15 6 5.2257 -7.0162 0.7270 16 6 4.1486 -6.1644 0.8309 17 6 3.6931 -5.5796 2.1418 18 6 4.2223 -6.3989 3.3179 19 7 5.6565 -6.6422 3.0915 20 6 6.6071 -6.1302 3.9336 21 1 6.3714 -5.2861 4.5647 22 6 7.8740 -6.6961 3.9761 23 7 8.0825 -7.8831 3.4473 24 14 9.2826 -5.7729 4.7842 25 1 8.9549 -5.5193 6.2102 26 1 10.5216 -6.5871 4.6988 27 1 9.4912 -4.4788 4.0865 28 6 6.0266 -7.4543 1.9274 29 1 -0.3633 -0.1039 1.0223 30 1 -0.3633 0.9373 -0.4212 31 1 -0.3633 -0.8335 -0.6012 32 1 1.9083 2.1235 0.0012 33 1 4.4132 1.3611 -0.0130 34 1 4.4583 -1.3145 -0.0086 35 1 3.6571 -3.3167 -0.1154 36 1 1.6168 -5.0131 -1.0826 37 1 1.6722 -5.1570 0.6906 38 1 3.2566 -6.0262 -2.4294 39 1 5.2041 -7.5274 -2.6159 40 1 6.4551 -8.1628 -0.5974 41 1 2.6036 -5.5694 2.1734 42 1 4.0637 -4.5577 2.2213 43 1 3.6914 -7.3493 3.3739 44 1 4.0844 -5.8436 4.2458 45 1 8.9677 -8.2788 3.4773 46 1 5.8208 -8.5039 2.1373 47 1 7.0893 -7.3281 1.7202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051279237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:22 Heat of formation + Delta-G solvation = 63.738929 kcal Electronic energy + Delta-G solvation = -29097.927683 eV Core-core repulsion = 25246.923839 eV Total energy + Delta-G solvation = -3851.003844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.47536 -39.82961 -38.76444 -36.00316 -35.00915 -33.13658 -32.67405 -31.71797 -30.14671 -29.66816 -28.56956 -26.65215 -25.85145 -25.56761 -23.16018 -22.54162 -22.10768 -20.77501 -20.40364 -19.60327 -18.98918 -18.02062 -16.80582 -16.09141 -16.02837 -15.84980 -15.42849 -15.21510 -14.83678 -14.34360 -14.28243 -14.18356 -13.59365 -13.58016 -13.39850 -13.21633 -12.90695 -12.66832 -12.57971 -12.50525 -12.46353 -12.29404 -12.16333 -11.94368 -11.50429 -11.26053 -10.93780 -10.86657 -10.70234 -10.37800 -10.14421 -10.08791 -9.89505 -9.73022 -9.10459 -8.88479 -8.71342 -8.34294 -8.26525 -7.85725 -6.83872 -5.83249 -3.21175 1.37647 1.60439 1.88434 2.55314 2.61500 3.34490 3.37156 3.40744 3.42843 3.44081 4.22818 4.45681 4.59870 4.70587 4.81409 4.92726 5.04369 5.14449 5.25774 5.26864 5.28209 5.32087 5.41513 5.41976 5.51549 5.55026 5.72858 5.84402 5.93568 5.99842 6.05072 6.12121 6.14655 6.22891 6.35798 6.48797 6.55354 6.62044 6.65409 6.83261 6.83620 6.85798 6.95593 7.04161 7.13498 7.23663 7.45723 7.50404 7.64131 7.74015 8.15654 8.32893 9.15075 9.77509 10.33305 11.26437 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010911 B = 0.003286 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.605678 B = 8517.875048 C = 9986.054332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.413 5.413 3 C 0.010 3.990 4 C -0.207 4.207 5 C -0.138 4.138 6 C -0.052 4.052 7 C 0.588 3.412 8 O -0.556 6.556 9 N -0.707 5.707 10 C 0.169 3.831 11 C -0.126 4.126 12 C -0.118 4.118 13 C -0.132 4.132 14 C -0.112 4.112 15 C -0.076 4.076 16 C -0.046 4.046 17 C -0.100 4.100 18 C 0.142 3.858 19 N -0.594 5.594 20 C -0.244 4.244 21 H 0.071 0.929 22 C -0.003 4.003 23 N -0.912 5.912 24 Si 0.907 3.093 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.200 3.800 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.168 0.832 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.406 0.594 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.026 0.974 44 H 0.060 0.940 45 H 0.255 0.745 46 H 0.039 0.961 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.634 12.233 -10.915 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.086 5.086 3 C -0.125 4.125 4 C -0.231 4.231 5 C -0.164 4.164 6 C -0.165 4.165 7 C 0.376 3.624 8 O -0.437 6.437 9 N -0.358 5.358 10 C 0.047 3.953 11 C -0.126 4.126 12 C -0.136 4.136 13 C -0.150 4.150 14 C -0.131 4.131 15 C -0.078 4.078 16 C -0.047 4.047 17 C -0.139 4.139 18 C 0.015 3.985 19 N -0.316 5.316 20 C -0.373 4.373 21 H 0.089 0.911 22 C -0.200 4.200 23 N -0.558 5.558 24 Si 0.737 3.263 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.210 1.210 28 C 0.075 3.925 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.185 0.815 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.241 0.759 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.138 0.862 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.044 0.956 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.056 0.944 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.722 11.912 -10.812 20.510 hybrid contribution 1.292 0.548 0.293 1.434 sum -11.430 12.461 -10.519 19.914 Atomic orbital electron populations 1.22183 0.76206 1.04309 1.04252 1.43840 1.06752 1.05010 1.52993 1.22008 0.90754 0.91410 1.08302 1.20843 0.96015 0.95073 1.11153 1.21434 0.94579 0.95617 1.04815 1.20074 0.90463 0.87588 1.18374 1.16972 0.85551 0.83508 0.76340 1.90775 1.16432 1.85027 1.51434 1.45745 1.10137 1.05851 1.74047 1.20167 0.94231 0.78448 1.02461 1.19767 0.98069 1.01038 0.93753 1.20747 0.97755 0.99024 0.96099 1.20932 0.96446 0.99453 0.98161 1.21200 0.99795 1.00003 0.92117 1.21063 0.95078 0.94482 0.97165 1.19448 0.94403 0.96526 0.94296 1.21044 0.98974 1.00230 0.93604 1.20900 0.86212 0.96433 0.94915 1.44027 0.99949 1.60821 1.26819 1.19192 0.91365 1.09181 1.17607 0.91109 1.24932 0.98920 0.95710 1.00466 1.69962 1.21853 1.14261 1.49696 0.86287 0.81740 0.79109 0.79197 1.20928 1.21582 1.21033 1.19921 0.98515 0.92782 0.81320 0.90504 0.90023 0.88551 0.81511 0.83970 0.83733 0.75865 0.91165 0.90266 0.86873 0.86671 0.86225 0.91933 0.91151 0.95551 0.92150 0.93462 0.94370 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 10.35 59.85 0.62 1.24 16 2 N -0.41 -4.60 3.16 -120.24 -0.38 -4.98 16 3 C 0.01 0.10 11.37 -16.91 -0.19 -0.09 16 4 C -0.21 -2.14 10.81 -39.98 -0.43 -2.57 16 5 C -0.14 -1.63 10.35 -39.12 -0.41 -2.04 16 6 C -0.05 -0.67 6.89 -81.98 -0.56 -1.23 16 7 C 0.59 8.37 7.77 -12.86 -0.10 8.28 16 8 O -0.56 -9.09 14.90 5.19 0.08 -9.01 16 9 N -0.71 -9.30 5.50 -62.80 -0.35 -9.65 16 10 C 0.17 2.29 5.11 -5.19 -0.03 2.27 16 11 C -0.13 -1.88 5.26 -104.47 -0.55 -2.43 16 12 C -0.12 -1.64 9.65 -39.69 -0.38 -2.02 16 13 C -0.13 -1.91 10.05 -39.67 -0.40 -2.30 16 14 C -0.11 -1.91 9.62 -39.46 -0.38 -2.29 16 15 C -0.08 -1.49 5.82 -104.55 -0.61 -2.10 16 16 C -0.05 -0.82 5.76 -104.61 -0.60 -1.42 16 17 C -0.10 -1.76 5.24 -28.04 -0.15 -1.91 16 18 C 0.14 2.93 6.52 -3.75 -0.02 2.91 16 19 N -0.59 -14.61 2.99 -173.94 -0.52 -15.13 16 20 C -0.24 -6.56 9.74 -15.06 -0.15 -6.71 16 21 H 0.07 1.86 7.87 -52.49 -0.41 1.44 16 22 C 0.00 -0.08 5.05 -17.43 -0.09 -0.17 16 23 N -0.91 -25.66 10.77 55.49 0.60 -25.06 16 24 Si 0.91 21.38 29.58 -169.99 -5.03 16.35 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.20 4.70 4.91 -5.04 -0.02 4.68 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 31 H 0.10 0.97 6.81 -51.93 -0.35 0.62 16 32 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 34 H 0.14 1.54 7.45 -52.49 -0.39 1.15 16 35 H 0.41 5.06 7.36 -40.82 -0.30 4.76 16 36 H 0.07 0.90 7.99 -51.93 -0.41 0.48 16 37 H 0.08 1.14 6.34 -51.93 -0.33 0.81 16 38 H 0.11 1.32 8.03 -52.48 -0.42 0.90 16 39 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.12 1.93 8.05 -52.48 -0.42 1.50 16 41 H 0.06 0.99 6.25 -51.93 -0.32 0.67 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 45 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.11 2.81 6.01 -51.93 -0.31 2.50 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -31.38 381.78 -10.91 -42.29 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.61 Total: 7.35 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -4.45 Total: -7.92 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.65 Total: -54.82 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.38 -10.91 -42.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051279237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.030 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds