Wall clock time and date at job start Sat Apr 11 2020 05:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35532 * 125.67862 * 2 1 4 4 C 1.35455 * 108.86807 * 180.29995 * 3 2 1 5 5 C 1.39833 * 107.86790 * 359.73507 * 4 3 2 6 6 C 1.37654 * 125.67422 * 179.84671 * 2 1 3 7 7 C 1.46677 * 126.23747 * 359.96104 * 6 2 1 8 8 O 1.21695 * 119.99880 * 354.50736 * 7 6 2 9 9 N 1.34771 * 119.99828 * 174.50377 * 7 6 2 10 10 C 1.46501 * 119.99998 * 184.65358 * 9 7 6 11 11 C 1.50698 * 109.47684 * 180.02562 * 10 9 7 12 12 C 1.37954 * 119.71123 * 260.00192 * 11 10 9 13 13 C 1.38220 * 119.83054 * 180.02562 * 12 11 10 14 14 C 1.38002 * 119.71483 * 0.26595 * 13 12 11 15 15 C 1.38794 * 120.50512 * 359.83506 * 14 13 12 16 16 C 1.37713 * 119.84565 * 359.44473 * 15 14 13 17 17 C 1.50596 * 122.84751 * 181.01892 * 16 15 14 18 18 C 1.52791 * 110.92364 * 340.15645 * 17 16 15 19 19 N 1.47224 * 107.91298 * 47.31913 * 18 17 16 20 20 C 1.36929 * 121.32938 * 115.77532 * 19 18 17 21 21 H 1.08001 * 120.00479 * 339.23908 * 20 19 18 22 22 C 1.38818 * 120.00098 * 159.24006 * 20 19 18 23 23 N 1.31613 * 119.99623 * 344.96085 * 22 20 19 24 24 Si 1.86800 * 119.99901 * 164.96784 * 22 20 19 25 25 H 1.48496 * 109.47451 * 59.99841 * 24 22 20 26 26 H 1.48505 * 109.46995 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47244 * 299.99479 * 24 22 20 28 28 C 1.46685 * 117.34497 * 295.80702 * 19 18 17 29 29 H 1.08996 * 109.47252 * 264.19476 * 1 2 3 30 30 H 1.08994 * 109.47118 * 24.19626 * 1 2 3 31 31 H 1.09004 * 109.47123 * 144.19903 * 1 2 3 32 32 H 1.07992 * 125.56568 * 0.07775 * 3 2 1 33 33 H 1.08004 * 126.06148 * 179.69838 * 4 3 2 34 34 H 1.07997 * 126.45739 * 180.02562 * 5 4 3 35 35 H 0.97005 * 120.00670 * 4.65029 * 9 7 6 36 36 H 1.09004 * 109.47053 * 60.00039 * 10 9 7 37 37 H 1.08997 * 109.47292 * 300.00301 * 10 9 7 38 38 H 1.08003 * 120.08470 * 0.10232 * 12 11 10 39 39 H 1.07999 * 120.14646 * 180.28088 * 13 12 11 40 40 H 1.08004 * 119.75080 * 179.85674 * 14 13 12 41 41 H 1.08999 * 109.33820 * 219.66792 * 17 16 15 42 42 H 1.08998 * 108.95284 * 100.39059 * 17 16 15 43 43 H 1.09003 * 109.77564 * 287.71548 * 18 17 16 44 44 H 1.09002 * 109.77300 * 166.92349 * 18 17 16 45 45 H 0.97005 * 119.99691 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.43068 * 284.32425 * 28 19 18 47 47 H 1.09001 * 109.43514 * 164.45851 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7092 -0.0067 5 6 3.5780 -0.6889 -0.0049 6 6 2.2678 -1.1182 0.0030 7 6 1.8124 -2.5125 0.0075 8 8 0.6263 -2.7648 0.1098 9 7 2.7075 -3.5141 -0.1017 10 6 2.2463 -4.9012 -0.1998 11 6 3.4360 -5.8195 -0.3108 12 6 3.8120 -6.3050 -1.5462 13 6 4.9025 -7.1479 -1.6508 14 6 5.6044 -7.5023 -0.5167 15 6 5.2257 -7.0162 0.7270 16 6 4.1486 -6.1644 0.8309 17 6 3.6931 -5.5796 2.1418 18 6 4.2223 -6.3989 3.3179 19 7 5.6565 -6.6422 3.0915 20 6 6.6071 -6.1302 3.9336 21 1 6.3714 -5.2861 4.5647 22 6 7.8740 -6.6961 3.9761 23 7 8.0825 -7.8831 3.4473 24 14 9.2826 -5.7729 4.7842 25 1 8.9549 -5.5193 6.2102 26 1 10.5216 -6.5871 4.6988 27 1 9.4912 -4.4788 4.0865 28 6 6.0266 -7.4543 1.9274 29 1 -0.3633 -0.1039 1.0223 30 1 -0.3633 0.9373 -0.4212 31 1 -0.3633 -0.8335 -0.6012 32 1 1.9083 2.1235 0.0012 33 1 4.4132 1.3611 -0.0130 34 1 4.4583 -1.3145 -0.0086 35 1 3.6571 -3.3167 -0.1154 36 1 1.6168 -5.0131 -1.0826 37 1 1.6722 -5.1570 0.6906 38 1 3.2566 -6.0262 -2.4294 39 1 5.2041 -7.5274 -2.6159 40 1 6.4551 -8.1628 -0.5974 41 1 2.6036 -5.5694 2.1734 42 1 4.0637 -4.5577 2.2213 43 1 3.6914 -7.3493 3.3739 44 1 4.0844 -5.8436 4.2458 45 1 8.9677 -8.2788 3.4773 46 1 5.8208 -8.5039 2.1373 47 1 7.0893 -7.3281 1.7202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051279237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:21 Heat of formation + Delta-G solvation = 46.500634 kcal Electronic energy + Delta-G solvation = -29098.675192 eV Core-core repulsion = 25246.923839 eV Total energy + Delta-G solvation = -3851.751353 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.30445 -41.11023 -39.89647 -37.66345 -36.16772 -34.51050 -33.86197 -33.03804 -31.78112 -30.82271 -29.86539 -27.45166 -27.36097 -26.94502 -24.79734 -23.77763 -23.49914 -21.85123 -21.36429 -20.67288 -20.47997 -18.90706 -18.66240 -17.36357 -17.14432 -16.87729 -16.57848 -16.40791 -16.36687 -15.91235 -15.49162 -15.34607 -15.14404 -14.74725 -14.55150 -14.31701 -14.12580 -14.09297 -13.92111 -13.58796 -13.37520 -13.26694 -13.22591 -13.17095 -12.88919 -12.81607 -12.70364 -12.53706 -12.34700 -12.19094 -11.82800 -11.62370 -11.34352 -11.16854 -10.67950 -10.18703 -9.68281 -9.56002 -9.30659 -9.16528 -8.81910 -7.88896 -5.29879 0.34538 0.47251 0.57570 1.47310 1.49692 1.56400 1.74040 1.83022 2.36550 2.43198 2.50165 2.96032 3.27111 3.61341 3.65046 3.83535 3.94305 3.99395 4.02839 4.15936 4.20233 4.34456 4.38793 4.39587 4.48682 4.54552 4.56101 4.60475 4.73155 4.73921 4.77287 4.83060 4.98697 5.12331 5.15804 5.16392 5.19901 5.28038 5.31667 5.39589 5.49347 5.57691 5.64277 5.71225 5.80894 5.97133 6.00513 6.17300 6.31415 6.33481 6.48143 7.10835 7.11730 7.80029 8.33068 9.18872 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010911 B = 0.003286 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.605678 B = 8517.875048 C = 9986.054332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.420 5.420 3 C 0.026 3.974 4 C -0.224 4.224 5 C -0.143 4.143 6 C -0.087 4.087 7 C 0.587 3.413 8 O -0.584 6.584 9 N -0.703 5.703 10 C 0.175 3.825 11 C -0.116 4.116 12 C -0.103 4.103 13 C -0.120 4.120 14 C -0.122 4.122 15 C -0.107 4.107 16 C -0.059 4.059 17 C -0.085 4.085 18 C 0.138 3.862 19 N -0.612 5.612 20 C -0.258 4.258 21 H 0.073 0.927 22 C -0.054 4.054 23 N -0.940 5.940 24 Si 0.971 3.029 25 H -0.276 1.276 26 H -0.293 1.293 27 H -0.278 1.278 28 C 0.215 3.785 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.207 0.793 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.409 0.591 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.118 0.882 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.023 0.977 44 H 0.061 0.939 45 H 0.251 0.749 46 H 0.004 0.996 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.789 14.833 -12.851 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.093 5.093 3 C -0.110 4.110 4 C -0.247 4.247 5 C -0.170 4.170 6 C -0.200 4.200 7 C 0.377 3.623 8 O -0.467 6.467 9 N -0.353 5.353 10 C 0.053 3.947 11 C -0.116 4.116 12 C -0.122 4.122 13 C -0.138 4.138 14 C -0.141 4.141 15 C -0.108 4.108 16 C -0.060 4.060 17 C -0.124 4.124 18 C 0.012 3.988 19 N -0.335 5.335 20 C -0.387 4.387 21 H 0.091 0.909 22 C -0.249 4.249 23 N -0.587 5.587 24 Si 0.799 3.201 25 H -0.202 1.202 26 H -0.219 1.219 27 H -0.204 1.204 28 C 0.090 3.910 29 H 0.093 0.907 30 H 0.136 0.864 31 H 0.097 0.903 32 H 0.223 0.777 33 H 0.178 0.822 34 H 0.166 0.834 35 H 0.245 0.755 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.167 0.833 39 H 0.168 0.832 40 H 0.136 0.864 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.041 0.959 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.021 0.979 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.897 14.514 -12.753 23.799 hybrid contribution 1.581 -0.215 0.846 1.806 sum -12.316 14.299 -11.907 22.314 Atomic orbital electron populations 1.22295 0.75109 1.05541 1.04114 1.44114 1.07626 1.04930 1.52644 1.22689 0.90323 0.92522 1.05444 1.21185 0.97334 0.94627 1.11603 1.21662 0.94393 0.96716 1.04241 1.20027 0.91328 0.87535 1.21113 1.17188 0.85180 0.84227 0.75729 1.90753 1.17451 1.85503 1.52962 1.45671 1.10218 1.05584 1.73814 1.20104 0.93496 0.78321 1.02819 1.19814 0.97788 1.00787 0.93253 1.21176 0.97059 0.97226 0.96715 1.21273 0.95633 0.98421 0.98470 1.21290 1.00370 1.00225 0.92203 1.20703 0.96371 0.97295 0.96433 1.19453 0.94522 0.96727 0.95255 1.20849 0.99929 0.99131 0.92474 1.21050 0.84370 0.96828 0.96553 1.44272 1.01253 1.60872 1.27088 1.19528 0.92276 1.09197 1.17745 0.90938 1.25698 1.01107 0.96479 1.01602 1.70149 1.21842 1.15609 1.51115 0.85284 0.78530 0.77831 0.78498 1.20202 1.21908 1.20429 1.19479 0.97442 0.91133 0.82955 0.90702 0.86391 0.90343 0.77665 0.82162 0.83442 0.75488 0.89668 0.91074 0.83297 0.83168 0.86360 0.89881 0.91565 0.95854 0.92000 0.94003 0.97866 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 10.35 127.77 1.32 2.41 16 2 N -0.42 -8.51 3.16 -534.32 -1.69 -10.20 16 3 C 0.03 0.41 11.37 83.48 0.95 1.36 16 4 C -0.22 -4.10 10.81 22.01 0.24 -3.86 16 5 C -0.14 -3.20 10.35 22.57 0.23 -2.96 16 6 C -0.09 -2.16 6.89 40.35 0.28 -1.89 16 7 C 0.59 16.21 7.77 86.45 0.67 16.89 16 8 O -0.58 -18.74 14.90 -4.33 -0.06 -18.81 16 9 N -0.70 -17.53 5.50 -470.82 -2.59 -20.12 16 10 C 0.18 4.38 5.11 85.63 0.44 4.82 16 11 C -0.12 -3.23 5.26 -19.77 -0.10 -3.33 16 12 C -0.10 -2.50 9.65 22.20 0.21 -2.29 16 13 C -0.12 -3.12 10.05 22.21 0.22 -2.89 16 14 C -0.12 -4.13 9.62 22.35 0.22 -3.91 16 15 C -0.11 -4.28 5.82 -19.82 -0.12 -4.40 16 16 C -0.06 -2.07 5.76 -19.85 -0.11 -2.19 16 17 C -0.09 -3.02 5.24 29.75 0.16 -2.86 16 18 C 0.14 5.86 6.52 86.17 0.56 6.42 16 19 N -0.61 -31.48 2.99 -704.21 -2.10 -33.58 16 20 C -0.26 -14.31 9.74 84.04 0.82 -13.50 16 21 H 0.07 3.89 7.87 -2.91 -0.02 3.87 16 22 C -0.05 -3.05 5.05 84.86 0.43 -2.62 16 23 N -0.94 -55.42 10.77 21.65 0.23 -55.18 16 24 Si 0.97 44.98 29.58 68.60 2.03 47.01 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 27 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 28 C 0.22 10.78 4.91 85.63 0.42 11.20 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.12 0.90 8.12 -2.39 -0.02 0.88 16 31 H 0.08 1.52 6.81 -2.38 -0.02 1.50 16 32 H 0.21 1.45 8.06 -2.91 -0.02 1.43 16 33 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.15 3.02 7.45 -2.91 -0.02 3.00 16 35 H 0.41 9.71 7.36 -92.70 -0.68 9.03 16 36 H 0.09 1.92 7.99 -2.39 -0.02 1.90 16 37 H 0.07 1.93 6.34 -2.39 -0.02 1.91 16 38 H 0.15 2.65 8.03 -2.91 -0.02 2.62 16 39 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 40 H 0.12 3.92 8.05 -2.91 -0.02 3.89 16 41 H 0.08 2.58 6.25 -2.39 -0.01 2.56 16 42 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.06 2.54 7.96 -2.39 -0.02 2.53 16 45 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 46 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 47 H 0.07 4.12 6.01 -2.39 -0.01 4.11 16 Total: -1.00 -71.30 381.78 2.96 -68.35 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.31 Total: 26.15 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 6.83 Total: -3.61 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -6.15 Total: -119.08 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.06 Total: -18.81 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -71.30 2.96 -68.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051279237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.846 kcal (2) G-P(sol) polarization free energy of solvation -71.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds