Wall clock time and date at job start Sat Apr 11 2020 05:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35534 * 125.68222 * 2 1 4 4 C 1.35449 * 108.87518 * 179.97438 * 3 2 1 5 5 C 1.39832 * 107.86673 * 359.74112 * 4 3 2 6 6 C 1.37652 * 125.67823 * 179.97438 * 2 1 3 7 7 C 1.46677 * 126.23441 * 0.02562 * 6 2 1 8 8 O 1.21694 * 119.99713 * 4.83257 * 7 6 2 9 9 N 1.34777 * 120.00199 * 184.83273 * 7 6 2 10 10 C 1.46504 * 119.99821 * 175.52814 * 9 7 6 11 11 C 1.53001 * 109.46991 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.76879 * 64.24605 * 11 10 9 13 13 C 1.52783 * 109.77750 * 184.99748 * 11 10 9 14 14 C 1.50598 * 110.86435 * 167.05105 * 13 11 10 15 15 C 1.38976 * 117.61513 * 160.40956 * 14 13 11 16 16 C 1.37909 * 120.58833 * 179.54108 * 15 14 13 17 17 C 1.38264 * 119.82337 * 359.96253 * 16 15 14 18 18 C 1.37952 * 119.71838 * 0.23966 * 17 16 15 19 19 C 1.37673 * 122.87263 * 340.31220 * 14 13 11 20 20 C 1.50816 * 122.35471 * 0.75901 * 19 14 13 21 21 N 1.46683 * 109.66992 * 348.90517 * 20 19 14 22 22 C 1.36930 * 121.34986 * 224.35982 * 21 20 19 23 23 H 1.08008 * 120.00292 * 154.13021 * 22 21 20 24 24 C 1.38811 * 120.00396 * 334.13332 * 22 21 20 25 25 N 1.31610 * 120.00776 * 162.29153 * 24 22 21 26 26 Si 1.86803 * 119.99637 * 342.28898 * 24 22 21 27 27 H 1.48501 * 109.47260 * 86.57780 * 26 24 22 28 28 H 1.48502 * 109.47438 * 206.57973 * 26 24 22 29 29 H 1.48501 * 109.47096 * 326.58065 * 26 24 22 30 30 H 1.09001 * 109.46686 * 264.59228 * 1 2 3 31 31 H 1.08992 * 109.46880 * 24.58904 * 1 2 3 32 32 H 1.08997 * 109.47230 * 144.59322 * 1 2 3 33 33 H 1.08004 * 125.56210 * 359.97438 * 3 2 1 34 34 H 1.08000 * 126.06584 * 180.02562 * 4 3 2 35 35 H 1.07992 * 126.46124 * 180.26940 * 5 4 3 36 36 H 0.96991 * 119.99909 * 355.53084 * 9 7 6 37 37 H 1.08998 * 109.47132 * 60.00253 * 10 9 7 38 38 H 1.09003 * 109.47021 * 299.99768 * 10 9 7 39 39 H 1.09000 * 109.20109 * 287.41606 * 13 11 10 40 40 H 1.09008 * 109.19991 * 46.70077 * 13 11 10 41 41 H 1.08004 * 119.70239 * 359.56174 * 15 14 13 42 42 H 1.07996 * 120.08492 * 179.97438 * 16 15 14 43 43 H 1.08001 * 120.14148 * 180.25654 * 17 16 15 44 44 H 1.08003 * 119.74756 * 179.97438 * 18 17 16 45 45 H 1.09002 * 109.43269 * 228.84424 * 20 19 14 46 46 H 1.09000 * 109.44189 * 108.97409 * 20 19 14 47 47 H 0.97006 * 120.00701 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2556 1.1009 0.0000 4 6 3.5522 0.7092 0.0006 5 6 3.5780 -0.6888 0.0070 6 6 2.2678 -1.1182 0.0005 7 6 1.8124 -2.5124 0.0006 8 8 0.6253 -2.7648 -0.0886 9 7 2.7087 -3.5141 0.0994 10 6 2.2487 -4.9016 0.1983 11 6 3.4577 -5.8337 0.2993 12 1 4.0010 -5.6341 1.2230 13 6 2.9920 -7.2887 0.2776 14 6 4.1544 -8.2208 0.0588 15 6 3.9891 -9.5526 0.4201 16 6 5.0105 -10.4611 0.2377 17 6 6.2103 -10.0462 -0.3099 18 6 6.3788 -8.7240 -0.6656 19 6 5.3527 -7.8076 -0.4786 20 6 5.6067 -6.3759 -0.8792 21 7 4.3464 -5.6258 -0.8561 22 6 4.0097 -4.7673 -1.8684 23 1 2.9708 -4.5516 -2.0705 24 6 5.0034 -4.1744 -2.6350 25 7 4.7053 -3.6412 -3.8008 26 14 6.7640 -4.1330 -2.0119 27 1 7.4566 -5.3875 -2.4015 28 1 7.4724 -2.9712 -2.6066 29 1 6.7625 -4.0074 -0.5322 30 1 -0.3633 -0.0969 1.0231 31 1 -0.3633 0.9344 -0.4276 32 1 -0.3633 -0.8376 -0.5954 33 1 1.9083 2.1236 -0.0004 34 1 4.4133 1.3611 0.0011 35 1 4.4583 -1.3144 0.0131 36 1 3.6583 -3.3164 0.1052 37 1 1.6668 -5.1554 -0.6878 38 1 1.6271 -5.0158 1.0863 39 1 2.5156 -7.5268 1.2287 40 1 2.2694 -7.4218 -0.5276 41 1 3.0523 -9.8789 0.8471 42 1 4.8733 -11.4940 0.5217 43 1 7.0121 -10.7542 -0.4589 44 1 7.3160 -8.3993 -1.0930 45 1 6.0261 -6.3498 -1.8849 46 1 6.3111 -5.9234 -0.1813 47 1 5.3999 -3.2272 -4.3367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054032845.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:30 Heat of formation + Delta-G solvation = 74.700287 kcal Electronic energy + Delta-G solvation = -29834.989495 eV Core-core repulsion = 25984.460971 eV Total energy + Delta-G solvation = -3850.528524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.99369 -39.66257 -38.49199 -36.69214 -33.97506 -33.02874 -32.46613 -31.76178 -30.61902 -29.70969 -28.69136 -26.24254 -25.71576 -25.41222 -23.29635 -22.15128 -21.72605 -20.99999 -20.11717 -19.48967 -18.91248 -17.59525 -16.61720 -16.30335 -15.63259 -15.43292 -15.12256 -15.06104 -14.98301 -14.55990 -14.39847 -13.94097 -13.74523 -13.50337 -13.12368 -12.99695 -12.85958 -12.67751 -12.57135 -12.34884 -12.23667 -12.04145 -12.02811 -11.77077 -11.71347 -11.46183 -11.20005 -11.02564 -10.70290 -10.51632 -10.24514 -9.92591 -9.55149 -9.41372 -8.79264 -8.44905 -8.43757 -8.37614 -8.13811 -7.83525 -7.10864 -5.99063 -3.39345 1.68653 1.72885 1.89692 2.98370 3.06569 3.23331 3.37126 3.43291 3.87195 3.99037 4.08810 4.43446 4.68285 4.97962 5.05223 5.12273 5.17816 5.26600 5.28192 5.32856 5.37920 5.38370 5.56911 5.65792 5.68558 5.72739 5.76086 5.83733 5.85112 5.93926 5.98857 6.12599 6.22325 6.28788 6.34179 6.35708 6.39861 6.49302 6.51153 6.70842 6.77679 6.82865 7.01558 7.09016 7.15415 7.29124 7.35734 7.49366 7.79354 8.22218 8.27925 8.81586 8.83102 9.62090 9.97073 11.15798 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014658 B = 0.003785 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.723343 B = 7396.712008 C = 8675.021831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.415 5.415 3 C 0.002 3.998 4 C -0.209 4.209 5 C -0.135 4.135 6 C -0.038 4.038 7 C 0.587 3.413 8 O -0.572 6.572 9 N -0.681 5.681 10 C 0.140 3.860 11 C 0.161 3.839 12 H 0.047 0.953 13 C -0.092 4.092 14 C -0.058 4.058 15 C -0.126 4.126 16 C -0.133 4.133 17 C -0.128 4.128 18 C -0.123 4.123 19 C -0.076 4.076 20 C 0.154 3.846 21 N -0.601 5.601 22 C -0.261 4.261 23 H 0.096 0.904 24 C 0.030 3.970 25 N -0.899 5.899 26 Si 0.875 3.125 27 H -0.287 1.287 28 H -0.302 1.302 29 H -0.270 1.270 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.164 0.836 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.413 0.587 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.088 0.912 46 H 0.041 0.959 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.061 -0.540 10.511 10.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.088 5.088 3 C -0.133 4.133 4 C -0.233 4.233 5 C -0.161 4.161 6 C -0.151 4.151 7 C 0.374 3.626 8 O -0.455 6.455 9 N -0.330 5.330 10 C 0.016 3.984 11 C 0.054 3.946 12 H 0.065 0.935 13 C -0.131 4.131 14 C -0.058 4.058 15 C -0.144 4.144 16 C -0.151 4.151 17 C -0.146 4.146 18 C -0.142 4.142 19 C -0.077 4.077 20 C 0.029 3.971 21 N -0.325 5.325 22 C -0.388 4.388 23 H 0.114 0.886 24 C -0.170 4.170 25 N -0.541 5.541 26 Si 0.705 3.295 27 H -0.215 1.215 28 H -0.230 1.230 29 H -0.196 1.196 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.181 0.819 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.250 0.750 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.105 0.895 46 H 0.058 0.942 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.258 -0.630 10.292 10.814 hybrid contribution 1.707 0.060 -0.031 1.708 sum -1.551 -0.570 10.261 10.393 Atomic orbital electron populations 1.22169 0.76593 1.04542 1.03701 1.43781 1.06544 1.05072 1.53450 1.21880 0.90779 0.91235 1.09390 1.20774 0.95817 0.95135 1.11616 1.21402 0.94847 0.95311 1.04542 1.20143 0.90286 0.87757 1.16937 1.16871 0.85526 0.83523 0.76631 1.90704 1.16639 1.85109 1.53031 1.45458 1.10429 1.05266 1.71878 1.21249 0.95750 0.80137 1.01312 1.20735 0.90984 0.91892 0.90946 0.93495 1.20883 0.95688 0.95014 1.01537 1.19457 0.94728 0.93859 0.97803 1.21145 0.98809 0.93066 1.01354 1.20913 0.94010 0.98996 1.01159 1.20952 0.97548 0.95776 1.00359 1.21106 0.98878 0.93336 1.00871 1.20439 0.93115 0.97379 0.96799 1.20438 0.89665 0.86438 1.00531 1.44374 1.18898 1.48234 1.21026 1.18890 0.94511 1.18700 1.06746 0.88631 1.25197 0.97233 0.98041 0.96491 1.69783 1.33309 1.40715 1.10305 0.87201 0.86811 0.76219 0.79232 1.21510 1.23021 1.19571 0.91081 0.90363 0.88041 0.81908 0.84393 0.83914 0.74968 0.90838 0.92083 0.91310 0.90155 0.86659 0.86778 0.86690 0.86570 0.89463 0.94188 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 10.49 59.85 0.63 1.53 16 2 N -0.42 -6.52 3.16 -120.24 -0.38 -6.90 16 3 C 0.00 0.02 11.37 -16.91 -0.19 -0.17 16 4 C -0.21 -3.13 10.81 -39.98 -0.43 -3.57 16 5 C -0.13 -2.36 10.35 -39.12 -0.41 -2.77 16 6 C -0.04 -0.70 6.89 -81.98 -0.56 -1.26 16 7 C 0.59 11.71 7.77 -12.85 -0.10 11.61 16 8 O -0.57 -12.27 14.77 5.19 0.08 -12.20 16 9 N -0.68 -13.04 4.04 -61.62 -0.25 -13.29 16 10 C 0.14 2.49 4.43 -4.04 -0.02 2.48 16 11 C 0.16 2.85 2.99 -67.64 -0.20 2.65 16 12 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 13 C -0.09 -1.45 5.21 -28.04 -0.15 -1.60 16 14 C -0.06 -0.97 5.76 -104.60 -0.60 -1.58 16 15 C -0.13 -1.81 9.59 -39.43 -0.38 -2.19 16 16 C -0.13 -1.79 10.04 -39.69 -0.40 -2.19 16 17 C -0.13 -1.80 10.05 -39.68 -0.40 -2.20 16 18 C -0.12 -2.01 9.62 -39.46 -0.38 -2.39 16 19 C -0.08 -1.39 5.82 -104.55 -0.61 -1.99 16 20 C 0.15 3.19 3.96 -5.04 -0.02 3.17 16 21 N -0.60 -12.85 2.66 -166.38 -0.44 -13.29 16 22 C -0.26 -6.56 7.62 -15.06 -0.11 -6.68 16 23 H 0.10 2.67 6.29 -52.48 -0.33 2.34 16 24 C 0.03 0.81 5.30 -17.43 -0.09 0.72 16 25 N -0.90 -26.31 13.97 55.49 0.78 -25.54 16 26 Si 0.87 20.67 24.15 -169.99 -4.10 16.57 16 27 H -0.29 -6.64 6.41 56.52 0.36 -6.28 16 28 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 29 H -0.27 -6.07 6.56 56.52 0.37 -5.70 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 32 H 0.10 1.52 6.53 -51.93 -0.34 1.18 16 33 H 0.16 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.14 2.47 7.45 -52.49 -0.39 2.08 16 36 H 0.41 8.07 6.38 -40.82 -0.26 7.81 16 37 H 0.07 1.48 7.25 -51.93 -0.38 1.10 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 40 H 0.08 1.33 8.03 -51.92 -0.42 0.91 16 41 H 0.12 1.39 8.05 -52.48 -0.42 0.96 16 42 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.12 1.76 8.05 -52.48 -0.42 1.33 16 45 H 0.09 1.99 4.84 -51.93 -0.25 1.74 16 46 H 0.04 0.83 6.42 -51.93 -0.33 0.49 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 371.41 15.07 5.60 5.60 Total: -1.00 -31.47 371.41 -9.71 -41.18 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -6.55 Total: 14.27 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -4.43 Total: -6.40 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.30 Total: -59.02 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.08 Total: -12.20 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.10 Total: 16.57 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.47 -9.71 -41.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054032845.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.879 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds