Wall clock time and date at job start Sat Apr 11 2020 05:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35534 * 125.68222 * 2 1 4 4 C 1.35449 * 108.87518 * 179.97438 * 3 2 1 5 5 C 1.39832 * 107.86673 * 359.74112 * 4 3 2 6 6 C 1.37652 * 125.67823 * 179.97438 * 2 1 3 7 7 C 1.46677 * 126.23441 * 0.02562 * 6 2 1 8 8 O 1.21694 * 119.99713 * 4.83257 * 7 6 2 9 9 N 1.34777 * 120.00199 * 184.83273 * 7 6 2 10 10 C 1.46504 * 119.99821 * 175.52814 * 9 7 6 11 11 C 1.53001 * 109.46991 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.76879 * 64.24605 * 11 10 9 13 13 C 1.52783 * 109.77750 * 184.99748 * 11 10 9 14 14 C 1.50598 * 110.86435 * 167.05105 * 13 11 10 15 15 C 1.38976 * 117.61513 * 160.40956 * 14 13 11 16 16 C 1.37909 * 120.58833 * 179.54108 * 15 14 13 17 17 C 1.38264 * 119.82337 * 359.96253 * 16 15 14 18 18 C 1.37952 * 119.71838 * 0.23966 * 17 16 15 19 19 C 1.37673 * 122.87263 * 340.31220 * 14 13 11 20 20 C 1.50816 * 122.35471 * 0.75901 * 19 14 13 21 21 N 1.46683 * 109.66992 * 348.90517 * 20 19 14 22 22 C 1.36930 * 121.34986 * 224.35982 * 21 20 19 23 23 H 1.08008 * 120.00292 * 154.13021 * 22 21 20 24 24 C 1.38811 * 120.00396 * 334.13332 * 22 21 20 25 25 N 1.31610 * 120.00776 * 162.29153 * 24 22 21 26 26 Si 1.86803 * 119.99637 * 342.28898 * 24 22 21 27 27 H 1.48501 * 109.47260 * 86.57780 * 26 24 22 28 28 H 1.48502 * 109.47438 * 206.57973 * 26 24 22 29 29 H 1.48501 * 109.47096 * 326.58065 * 26 24 22 30 30 H 1.09001 * 109.46686 * 264.59228 * 1 2 3 31 31 H 1.08992 * 109.46880 * 24.58904 * 1 2 3 32 32 H 1.08997 * 109.47230 * 144.59322 * 1 2 3 33 33 H 1.08004 * 125.56210 * 359.97438 * 3 2 1 34 34 H 1.08000 * 126.06584 * 180.02562 * 4 3 2 35 35 H 1.07992 * 126.46124 * 180.26940 * 5 4 3 36 36 H 0.96991 * 119.99909 * 355.53084 * 9 7 6 37 37 H 1.08998 * 109.47132 * 60.00253 * 10 9 7 38 38 H 1.09003 * 109.47021 * 299.99768 * 10 9 7 39 39 H 1.09000 * 109.20109 * 287.41606 * 13 11 10 40 40 H 1.09008 * 109.19991 * 46.70077 * 13 11 10 41 41 H 1.08004 * 119.70239 * 359.56174 * 15 14 13 42 42 H 1.07996 * 120.08492 * 179.97438 * 16 15 14 43 43 H 1.08001 * 120.14148 * 180.25654 * 17 16 15 44 44 H 1.08003 * 119.74756 * 179.97438 * 18 17 16 45 45 H 1.09002 * 109.43269 * 228.84424 * 20 19 14 46 46 H 1.09000 * 109.44189 * 108.97409 * 20 19 14 47 47 H 0.97006 * 120.00701 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2556 1.1009 0.0000 4 6 3.5522 0.7092 0.0006 5 6 3.5780 -0.6888 0.0070 6 6 2.2678 -1.1182 0.0005 7 6 1.8124 -2.5124 0.0006 8 8 0.6253 -2.7648 -0.0886 9 7 2.7087 -3.5141 0.0994 10 6 2.2487 -4.9016 0.1983 11 6 3.4577 -5.8337 0.2993 12 1 4.0010 -5.6341 1.2230 13 6 2.9920 -7.2887 0.2776 14 6 4.1544 -8.2208 0.0588 15 6 3.9891 -9.5526 0.4201 16 6 5.0105 -10.4611 0.2377 17 6 6.2103 -10.0462 -0.3099 18 6 6.3788 -8.7240 -0.6656 19 6 5.3527 -7.8076 -0.4786 20 6 5.6067 -6.3759 -0.8792 21 7 4.3464 -5.6258 -0.8561 22 6 4.0097 -4.7673 -1.8684 23 1 2.9708 -4.5516 -2.0705 24 6 5.0034 -4.1744 -2.6350 25 7 4.7053 -3.6412 -3.8008 26 14 6.7640 -4.1330 -2.0119 27 1 7.4566 -5.3875 -2.4015 28 1 7.4724 -2.9712 -2.6066 29 1 6.7625 -4.0074 -0.5322 30 1 -0.3633 -0.0969 1.0231 31 1 -0.3633 0.9344 -0.4276 32 1 -0.3633 -0.8376 -0.5954 33 1 1.9083 2.1236 -0.0004 34 1 4.4133 1.3611 0.0011 35 1 4.4583 -1.3144 0.0131 36 1 3.6583 -3.3164 0.1052 37 1 1.6668 -5.1554 -0.6878 38 1 1.6271 -5.0158 1.0863 39 1 2.5156 -7.5268 1.2287 40 1 2.2694 -7.4218 -0.5276 41 1 3.0523 -9.8789 0.8471 42 1 4.8733 -11.4940 0.5217 43 1 7.0121 -10.7542 -0.4589 44 1 7.3160 -8.3993 -1.0930 45 1 6.0261 -6.3498 -1.8849 46 1 6.3111 -5.9234 -0.1813 47 1 5.3999 -3.2272 -4.3367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054032845.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:29 Heat of formation + Delta-G solvation = 55.894727 kcal Electronic energy + Delta-G solvation = -29835.804965 eV Core-core repulsion = 25984.460971 eV Total energy + Delta-G solvation = -3851.343994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.24262 -41.00254 -39.94324 -38.18079 -35.53172 -34.59690 -33.70828 -33.34451 -32.05594 -31.13220 -29.96969 -27.35768 -27.33077 -26.80501 -24.97339 -23.52224 -22.98005 -22.39476 -21.32253 -20.97116 -20.37084 -18.98399 -18.22573 -17.74999 -17.12011 -16.89976 -16.60633 -16.42606 -16.34888 -15.90041 -15.76943 -15.41137 -15.22558 -14.86769 -14.49104 -14.28337 -14.16007 -14.11669 -14.07310 -13.85613 -13.73781 -13.25406 -13.22353 -13.10170 -12.90655 -12.83611 -12.75293 -12.45724 -12.23890 -12.12373 -11.82913 -11.51656 -11.41281 -10.96254 -10.72880 -9.96498 -9.64880 -9.62685 -9.38551 -9.10742 -8.93739 -8.08758 -5.44133 0.52320 0.53761 0.55055 1.30859 1.40995 1.49374 1.77967 1.87316 2.42171 2.44217 2.58556 2.90519 3.01947 3.27912 3.73387 3.90218 3.93924 4.00714 4.12012 4.15817 4.21786 4.31538 4.36297 4.37369 4.40951 4.50085 4.51124 4.56665 4.58449 4.64293 4.75484 4.78575 4.83177 4.83775 4.91367 5.16935 5.17272 5.19147 5.30273 5.35814 5.56501 5.63503 5.65990 5.78876 5.85077 5.91084 6.01310 6.19690 6.22109 6.40374 6.66567 6.87200 7.28159 7.61960 8.02244 9.10306 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014658 B = 0.003785 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.723343 B = 7396.712008 C = 8675.021831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.420 5.420 3 C 0.027 3.973 4 C -0.225 4.225 5 C -0.147 4.147 6 C -0.081 4.081 7 C 0.580 3.420 8 O -0.597 6.597 9 N -0.684 5.684 10 C 0.143 3.857 11 C 0.162 3.838 12 H 0.064 0.936 13 C -0.086 4.086 14 C -0.076 4.076 15 C -0.125 4.125 16 C -0.125 4.125 17 C -0.125 4.125 18 C -0.138 4.138 19 C -0.107 4.107 20 C 0.157 3.843 21 N -0.611 5.611 22 C -0.224 4.224 23 H 0.059 0.941 24 C -0.026 4.026 25 N -0.954 5.954 26 Si 0.933 3.067 27 H -0.281 1.281 28 H -0.316 1.316 29 H -0.252 1.252 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.213 0.787 34 H 0.162 0.838 35 H 0.132 0.868 36 H 0.409 0.591 37 H 0.043 0.957 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.067 0.933 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.118 0.882 45 H 0.059 0.941 46 H 0.042 0.958 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.900 -1.486 13.095 13.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.093 5.093 3 C -0.109 4.109 4 C -0.249 4.249 5 C -0.174 4.174 6 C -0.194 4.194 7 C 0.369 3.631 8 O -0.482 6.482 9 N -0.332 5.332 10 C 0.020 3.980 11 C 0.056 3.944 12 H 0.082 0.918 13 C -0.124 4.124 14 C -0.076 4.076 15 C -0.143 4.143 16 C -0.142 4.142 17 C -0.143 4.143 18 C -0.156 4.156 19 C -0.108 4.108 20 C 0.032 3.968 21 N -0.336 5.336 22 C -0.353 4.353 23 H 0.077 0.923 24 C -0.221 4.221 25 N -0.601 5.601 26 Si 0.763 3.237 27 H -0.208 1.208 28 H -0.246 1.246 29 H -0.177 1.177 30 H 0.102 0.898 31 H 0.137 0.863 32 H 0.090 0.910 33 H 0.230 0.770 34 H 0.180 0.820 35 H 0.150 0.850 36 H 0.246 0.754 37 H 0.061 0.939 38 H 0.105 0.895 39 H 0.123 0.877 40 H 0.085 0.915 41 H 0.161 0.839 42 H 0.168 0.832 43 H 0.163 0.837 44 H 0.136 0.864 45 H 0.077 0.923 46 H 0.059 0.941 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.097 -1.630 12.934 13.399 hybrid contribution 1.564 0.284 -0.786 1.774 sum -1.532 -1.346 12.148 12.318 Atomic orbital electron populations 1.22320 0.75065 1.05438 1.04333 1.44086 1.07654 1.04767 1.52787 1.22682 0.90045 0.92531 1.05610 1.21142 0.97613 0.94074 1.12059 1.21550 0.94330 0.96925 1.04622 1.20045 0.91324 0.87796 1.20239 1.17230 0.85289 0.84533 0.76072 1.90669 1.17429 1.85677 1.54387 1.45504 1.10145 1.05752 1.71798 1.21272 0.95964 0.79803 1.00997 1.20937 0.90174 0.93343 0.89929 0.91818 1.20826 0.95478 0.93140 1.02999 1.19615 0.94190 0.95322 0.98468 1.21451 1.00320 0.91932 1.00566 1.21382 0.93079 1.00539 0.99247 1.21318 0.98810 0.95094 0.99080 1.21250 0.98616 0.94333 1.01418 1.20274 0.94995 0.96047 0.99520 1.20283 0.88881 0.88554 0.99048 1.44435 1.19869 1.47879 1.21464 1.18603 0.92668 1.17612 1.06442 0.92307 1.25709 1.00894 0.98855 0.96658 1.69935 1.34268 1.43744 1.12125 0.86235 0.82408 0.75583 0.79479 1.20818 1.24574 1.17661 0.89821 0.86339 0.90985 0.77035 0.82005 0.84969 0.75423 0.93854 0.89519 0.87661 0.91474 0.83887 0.83187 0.83719 0.86393 0.92305 0.94060 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.67 10.49 127.77 1.34 3.01 16 2 N -0.42 -12.83 3.16 -534.32 -1.69 -14.52 16 3 C 0.03 0.66 11.37 83.48 0.95 1.61 16 4 C -0.23 -6.46 10.81 22.01 0.24 -6.22 16 5 C -0.15 -5.28 10.35 22.57 0.23 -5.05 16 6 C -0.08 -3.08 6.89 40.35 0.28 -2.80 16 7 C 0.58 24.34 7.77 86.45 0.67 25.02 16 8 O -0.60 -26.90 14.77 -4.33 -0.06 -26.96 16 9 N -0.68 -27.52 4.04 -467.07 -1.89 -29.41 16 10 C 0.14 5.29 4.43 86.38 0.38 5.68 16 11 C 0.16 5.71 2.99 44.78 0.13 5.85 16 12 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 13 C -0.09 -2.59 5.21 29.74 0.15 -2.43 16 14 C -0.08 -2.39 5.76 -19.85 -0.11 -2.51 16 15 C -0.12 -3.13 9.59 22.37 0.21 -2.92 16 16 C -0.12 -2.80 10.04 22.20 0.22 -2.58 16 17 C -0.13 -3.08 10.05 22.21 0.22 -2.85 16 18 C -0.14 -4.27 9.62 22.35 0.21 -4.05 16 19 C -0.11 -3.83 5.82 -19.82 -0.12 -3.94 16 20 C 0.16 6.57 3.96 85.64 0.34 6.91 16 21 N -0.61 -26.84 2.66 -680.30 -1.81 -28.65 16 22 C -0.22 -11.88 7.62 84.03 0.64 -11.24 16 23 H 0.06 3.54 6.29 -2.91 -0.02 3.53 16 24 C -0.03 -1.48 5.30 84.86 0.45 -1.03 16 25 N -0.95 -59.28 13.97 21.65 0.30 -58.98 16 26 Si 0.93 44.70 24.15 68.60 1.66 46.35 16 27 H -0.28 -13.01 6.41 99.48 0.64 -12.37 16 28 H -0.32 -15.77 7.11 99.48 0.71 -15.06 16 29 H -0.25 -11.14 6.56 99.48 0.65 -10.49 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.12 1.87 8.12 -2.39 -0.02 1.85 16 32 H 0.07 2.21 6.53 -2.39 -0.02 2.19 16 33 H 0.21 3.03 8.06 -2.91 -0.02 3.00 16 34 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 35 H 0.13 4.84 7.45 -2.91 -0.02 4.82 16 36 H 0.41 16.85 6.38 -92.71 -0.59 16.26 16 37 H 0.04 1.85 7.25 -2.39 -0.02 1.84 16 38 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.11 2.40 8.11 -2.39 -0.02 2.38 16 40 H 0.07 2.21 8.03 -2.38 -0.02 2.19 16 41 H 0.14 2.76 8.05 -2.91 -0.02 2.73 16 42 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 43 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 44 H 0.12 3.48 8.05 -2.91 -0.02 3.45 16 45 H 0.06 2.76 4.84 -2.39 -0.01 2.75 16 46 H 0.04 1.70 6.42 -2.39 -0.02 1.68 16 47 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 Total: -1.00 -74.31 371.41 3.24 -71.07 By element: Atomic # 1 Polarization: 40.38 SS G_CDS: 0.28 Total: 40.66 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 6.46 Total: 0.44 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -5.09 Total: -131.56 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.06 Total: -26.96 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.66 Total: 46.35 kcal Total: -74.31 3.24 -71.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054032845.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.961 kcal (2) G-P(sol) polarization free energy of solvation -74.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds