Wall clock time and date at job start Sat Apr 11 2020 05:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35469 * 124.78166 * 2 1 4 4 C 1.36372 * 109.76976 * 180.02562 * 3 2 1 5 5 C 1.46915 * 126.77058 * 180.02562 * 4 3 2 6 6 O 1.21672 * 119.99874 * 179.97438 * 5 4 3 7 7 N 1.34777 * 119.99841 * 359.96362 * 5 4 3 8 8 C 1.47386 * 135.85212 * 359.62767 * 7 5 4 9 9 C 1.52077 * 87.41155 * 154.38972 * 8 7 5 10 10 C 1.47392 * 135.85348 * 180.02562 * 7 5 4 11 11 C 1.53518 * 117.21259 * 267.28234 * 9 8 7 12 12 C 1.54631 * 102.70088 * 262.92820 * 11 9 8 13 13 N 1.47151 * 107.37599 * 339.38263 * 12 11 9 14 14 C 1.36931 * 125.57717 * 179.06841 * 13 12 11 15 15 H 1.07996 * 120.00012 * 174.81980 * 14 13 12 16 16 C 1.38819 * 120.00406 * 354.82021 * 14 13 12 17 17 N 1.31615 * 119.99364 * 7.05776 * 16 14 13 18 18 Si 1.86799 * 120.00151 * 187.06260 * 16 14 13 19 19 H 1.48504 * 109.47148 * 94.98534 * 18 16 14 20 20 H 1.48502 * 109.47106 * 214.98419 * 18 16 14 21 21 H 1.48502 * 109.47164 * 334.98535 * 18 16 14 22 22 C 1.47751 * 108.84083 * 359.08828 * 13 12 11 23 23 C 1.47443 * 106.46378 * 0.02562 * 4 3 2 24 24 C 1.39273 * 134.00887 * 180.02562 * 23 4 3 25 25 C 1.37758 * 119.66547 * 179.97438 * 24 23 4 26 26 C 1.38752 * 120.30947 * 359.97438 * 25 24 23 27 27 C 1.37768 * 120.62560 * 359.78767 * 26 25 24 28 28 C 1.37959 * 124.79122 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47247 * 269.97158 * 1 2 3 30 30 H 1.09001 * 109.47800 * 29.97912 * 1 2 3 31 31 H 1.09006 * 109.46575 * 149.97953 * 1 2 3 32 32 H 1.08001 * 125.11716 * 0.04233 * 3 2 1 33 33 H 1.09003 * 113.54960 * 268.99729 * 8 7 5 34 34 H 1.08998 * 113.54514 * 39.68286 * 8 7 5 35 35 H 1.09008 * 113.54100 * 320.31911 * 10 7 5 36 36 H 1.08997 * 113.54917 * 90.92745 * 10 7 5 37 37 H 1.08999 * 110.76589 * 21.23002 * 11 9 8 38 38 H 1.09001 * 110.76432 * 144.62134 * 11 9 8 39 39 H 1.08999 * 109.86927 * 98.83591 * 12 11 9 40 40 H 1.08999 * 109.86240 * 219.93763 * 12 11 9 41 41 H 0.97005 * 119.99343 * 179.97438 * 17 16 14 42 42 H 1.08997 * 110.40445 * 263.50448 * 22 13 12 43 43 H 1.09001 * 110.40787 * 141.07667 * 22 13 12 44 44 H 1.07993 * 120.16683 * 359.93495 * 24 23 4 45 45 H 1.08008 * 119.84766 * 180.02562 * 25 24 23 46 46 H 1.07993 * 119.68490 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.02975 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2377 1.1126 0.0000 4 6 3.5549 0.7594 -0.0006 5 6 4.7092 1.6683 -0.0002 6 8 5.8390 1.2168 -0.0004 7 7 4.5165 3.0022 0.0000 8 6 3.3493 3.9022 -0.0067 9 6 4.2359 4.9444 0.6570 10 6 5.3814 4.1958 -0.0001 11 6 4.2275 4.9989 2.1912 12 6 3.2211 6.1354 2.4855 13 7 3.1185 6.9575 1.2694 14 6 2.3143 8.0549 1.1151 15 1 2.3709 8.6431 0.2111 16 6 1.4263 8.4117 2.1207 17 7 1.4533 7.7821 3.2762 18 14 0.1930 9.7850 1.8338 19 1 -1.0986 9.2049 1.3861 20 1 -0.0136 10.5368 3.0977 21 1 0.7108 10.7052 0.7895 22 6 4.0249 6.4045 0.2418 23 6 3.5923 -0.7145 -0.0016 24 6 4.6182 -1.6565 -0.0021 25 6 4.3108 -2.9993 -0.0025 26 6 2.9869 -3.4147 -0.0020 27 6 1.9624 -2.4936 0.0034 28 6 2.2521 -1.1330 -0.0005 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3635 0.8901 -0.5135 31 1 -0.3633 -0.8899 -0.5142 32 1 1.8666 2.1269 0.0007 33 1 3.0217 4.1831 -1.0076 34 1 2.5308 3.5583 0.6256 35 1 6.2598 4.0969 0.6377 36 1 5.6235 4.5580 -0.9992 37 1 3.8778 4.0551 2.6095 38 1 5.2167 5.2497 2.5743 39 1 2.2466 5.7130 2.7304 40 1 3.5819 6.7441 3.3146 41 1 0.8330 8.0316 3.9790 42 1 4.9737 6.9411 0.2436 43 1 3.5599 6.4562 -0.7427 44 1 5.6494 -1.3358 -0.0027 45 1 5.1041 -3.7323 -0.0025 46 1 2.7575 -4.4699 -0.0028 47 1 0.9353 -2.8276 0.0042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072901220.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:39 Heat of formation + Delta-G solvation = 105.202504 kcal Electronic energy + Delta-G solvation = -29126.058126 eV Core-core repulsion = 25276.852278 eV Total energy + Delta-G solvation = -3849.205848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.67013 -40.46167 -37.92481 -37.25243 -35.62489 -33.11895 -32.20390 -30.45623 -29.97867 -29.11211 -28.50660 -26.96515 -26.05656 -25.50279 -23.80280 -22.93560 -21.92131 -21.22288 -20.30818 -19.06937 -18.44261 -17.32735 -16.96216 -16.64504 -15.83903 -15.78645 -15.67712 -15.31130 -15.20605 -14.72466 -14.37579 -14.08303 -13.91989 -13.85310 -13.55551 -13.04520 -12.95303 -12.84321 -12.74340 -12.37170 -12.23559 -11.94101 -11.85601 -11.73557 -11.49322 -11.10450 -11.03516 -10.93218 -10.67089 -10.41943 -10.18986 -10.12515 -9.88667 -9.74886 -9.68564 -9.53562 -8.61940 -8.49828 -8.40998 -7.80236 -6.87722 -5.76938 -3.09350 0.88381 1.42595 1.96684 2.47857 3.00605 3.35876 3.41821 3.43849 3.45820 3.88925 4.38497 4.42739 4.45473 4.54395 4.59262 4.74077 4.85494 4.95033 4.98096 5.01082 5.14021 5.27312 5.28124 5.40129 5.44561 5.47342 5.57140 5.59985 5.64875 5.65608 5.80432 5.84718 5.91493 6.03868 6.18931 6.23161 6.27728 6.44402 6.45221 6.52071 6.55595 6.60234 6.65437 6.69353 6.94949 7.01285 7.51908 7.58449 7.78332 7.94550 8.20292 8.43877 9.16870 9.77201 10.43473 11.34899 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016701 B = 0.002764 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.131325 B =10128.791544 C =11283.551253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.474 5.474 3 C 0.107 3.893 4 C -0.221 4.221 5 C 0.617 3.383 6 O -0.551 6.551 7 N -0.642 5.642 8 C 0.114 3.886 9 C -0.104 4.104 10 C 0.122 3.878 11 C -0.117 4.117 12 C 0.179 3.821 13 N -0.605 5.605 14 C -0.228 4.228 15 H 0.078 0.922 16 C -0.007 4.007 17 N -0.919 5.919 18 Si 0.909 3.091 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.281 1.281 22 C 0.153 3.847 23 C -0.062 4.062 24 C -0.062 4.062 25 C -0.145 4.145 26 C -0.102 4.102 27 C -0.127 4.127 28 C 0.085 3.915 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.182 0.818 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.042 0.958 41 H 0.252 0.748 42 H 0.027 0.973 43 H 0.043 0.957 44 H 0.133 0.867 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.645 -18.826 -7.414 20.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.155 5.155 3 C -0.024 4.024 4 C -0.232 4.232 5 C 0.410 3.590 6 O -0.430 6.430 7 N -0.377 5.377 8 C -0.008 4.008 9 C -0.105 4.105 10 C -0.001 4.001 11 C -0.155 4.155 12 C 0.054 3.946 13 N -0.331 5.331 14 C -0.357 4.357 15 H 0.096 0.904 16 C -0.203 4.203 17 N -0.567 5.567 18 Si 0.740 3.260 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.026 3.974 23 C -0.066 4.066 24 C -0.080 4.080 25 C -0.164 4.164 26 C -0.122 4.122 27 C -0.148 4.148 28 C -0.019 4.019 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.199 0.801 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.045 0.955 43 H 0.061 0.939 44 H 0.151 0.849 45 H 0.142 0.858 46 H 0.143 0.857 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.530 -19.181 -7.277 20.521 hybrid contribution -0.952 0.835 -0.066 1.268 sum -1.483 -18.345 -7.343 19.816 Atomic orbital electron populations 1.22089 0.76440 1.04660 1.03700 1.43652 1.06473 1.04333 1.61063 1.22584 0.90068 0.91771 0.97970 1.19949 0.91960 0.92182 1.19098 1.16657 0.87624 0.79155 0.75598 1.90743 1.24406 1.75580 1.52301 1.49611 1.11644 1.03125 1.73292 1.22988 0.90483 0.86781 1.00571 1.22176 0.94972 0.95753 0.97626 1.22739 0.95552 0.81155 1.00607 1.22462 1.01061 1.00391 0.91590 1.21231 0.95324 0.88788 0.89244 1.44551 1.47594 1.31363 1.09632 1.19048 1.12361 1.02105 1.02151 0.90384 1.24811 0.99667 0.99710 0.96130 1.69980 1.39122 1.43735 1.03825 0.86142 0.81620 0.81256 0.77018 1.21697 1.21811 1.20628 1.21152 0.94169 0.88822 0.93237 1.18756 0.92104 0.91478 1.04300 1.20708 0.99041 0.91533 0.96768 1.20960 0.96367 0.95390 1.03691 1.20790 0.92303 0.98748 1.00317 1.19966 0.99551 0.88875 1.06374 1.18277 0.89775 0.88282 1.05529 0.90606 0.89268 0.89803 0.80121 0.89435 0.90387 0.90400 0.89832 0.92076 0.91733 0.93448 0.94006 0.93767 0.95539 0.93879 0.84940 0.85846 0.85749 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 10.98 59.85 0.66 1.14 16 2 N -0.47 -5.18 3.14 -121.60 -0.38 -5.56 16 3 C 0.11 1.32 10.46 -16.62 -0.17 1.14 16 4 C -0.22 -3.34 6.27 -103.31 -0.65 -3.99 16 5 C 0.62 10.49 8.05 -12.75 -0.10 10.39 16 6 O -0.55 -10.94 16.93 5.21 0.09 -10.86 16 7 N -0.64 -9.75 3.70 -187.18 -0.69 -10.45 16 8 C 0.11 1.60 6.41 -7.33 -0.05 1.55 16 9 C -0.10 -1.64 1.06 -155.20 -0.16 -1.81 16 10 C 0.12 1.76 8.03 -7.47 -0.06 1.70 16 11 C -0.12 -2.08 6.41 -25.61 -0.16 -2.25 16 12 C 0.18 4.09 5.40 -2.83 -0.02 4.07 16 13 N -0.60 -14.36 3.41 -170.54 -0.58 -14.94 16 14 C -0.23 -6.02 10.26 -15.06 -0.15 -6.17 16 15 H 0.08 1.99 7.84 -52.49 -0.41 1.58 16 16 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 17 N -0.92 -25.99 10.35 55.49 0.57 -25.41 16 18 Si 0.91 21.25 29.56 -169.99 -5.02 16.23 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.15 2.84 6.70 -3.22 -0.02 2.82 16 23 C -0.06 -0.91 6.27 -104.95 -0.66 -1.57 16 24 C -0.06 -0.85 9.85 -39.37 -0.39 -1.23 16 25 C -0.15 -1.56 10.03 -39.57 -0.40 -1.96 16 26 C -0.10 -0.98 10.01 -39.56 -0.40 -1.38 16 27 C -0.13 -1.29 9.91 -39.43 -0.39 -1.68 16 28 C 0.09 1.06 6.79 -83.97 -0.57 0.49 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.08 0.42 8.04 -51.93 -0.42 0.01 16 32 H 0.18 1.90 5.06 -52.49 -0.27 1.63 16 33 H 0.09 1.09 8.06 -51.93 -0.42 0.67 16 34 H 0.08 1.06 6.25 -51.93 -0.32 0.74 16 35 H 0.08 1.14 8.13 -51.92 -0.42 0.72 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 1.20 7.30 -51.93 -0.38 0.82 16 40 H 0.04 1.08 7.60 -51.93 -0.39 0.69 16 41 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.04 0.76 8.00 -51.93 -0.42 0.34 16 44 H 0.13 1.90 7.45 -52.49 -0.39 1.51 16 45 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 46 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.12 0.89 8.02 -52.48 -0.42 0.47 16 LS Contribution 381.73 15.07 5.75 5.75 Total: -1.00 -33.43 381.73 -10.83 -44.26 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.77 Total: 0.01 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -3.79 Total: 0.97 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -1.08 Total: -56.36 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.43 -10.83 -44.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072901220.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.458 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds