Wall clock time and date at job start Sat Apr 11 2020 05:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35469 * 124.78166 * 2 1 4 4 C 1.36372 * 109.76976 * 180.02562 * 3 2 1 5 5 C 1.46915 * 126.77058 * 180.02562 * 4 3 2 6 6 O 1.21672 * 119.99874 * 179.97438 * 5 4 3 7 7 N 1.34777 * 119.99841 * 359.96362 * 5 4 3 8 8 C 1.47386 * 135.85212 * 359.62767 * 7 5 4 9 9 C 1.52077 * 87.41155 * 154.38972 * 8 7 5 10 10 C 1.47392 * 135.85348 * 180.02562 * 7 5 4 11 11 C 1.53518 * 117.21259 * 267.28234 * 9 8 7 12 12 C 1.54631 * 102.70088 * 262.92820 * 11 9 8 13 13 N 1.47151 * 107.37599 * 339.38263 * 12 11 9 14 14 C 1.36931 * 125.57717 * 179.06841 * 13 12 11 15 15 H 1.07996 * 120.00012 * 174.81980 * 14 13 12 16 16 C 1.38819 * 120.00406 * 354.82021 * 14 13 12 17 17 N 1.31615 * 119.99364 * 7.05776 * 16 14 13 18 18 Si 1.86799 * 120.00151 * 187.06260 * 16 14 13 19 19 H 1.48504 * 109.47148 * 94.98534 * 18 16 14 20 20 H 1.48502 * 109.47106 * 214.98419 * 18 16 14 21 21 H 1.48502 * 109.47164 * 334.98535 * 18 16 14 22 22 C 1.47751 * 108.84083 * 359.08828 * 13 12 11 23 23 C 1.47443 * 106.46378 * 0.02562 * 4 3 2 24 24 C 1.39273 * 134.00887 * 180.02562 * 23 4 3 25 25 C 1.37758 * 119.66547 * 179.97438 * 24 23 4 26 26 C 1.38752 * 120.30947 * 359.97438 * 25 24 23 27 27 C 1.37768 * 120.62560 * 359.78767 * 26 25 24 28 28 C 1.37959 * 124.79122 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47247 * 269.97158 * 1 2 3 30 30 H 1.09001 * 109.47800 * 29.97912 * 1 2 3 31 31 H 1.09006 * 109.46575 * 149.97953 * 1 2 3 32 32 H 1.08001 * 125.11716 * 0.04233 * 3 2 1 33 33 H 1.09003 * 113.54960 * 268.99729 * 8 7 5 34 34 H 1.08998 * 113.54514 * 39.68286 * 8 7 5 35 35 H 1.09008 * 113.54100 * 320.31911 * 10 7 5 36 36 H 1.08997 * 113.54917 * 90.92745 * 10 7 5 37 37 H 1.08999 * 110.76589 * 21.23002 * 11 9 8 38 38 H 1.09001 * 110.76432 * 144.62134 * 11 9 8 39 39 H 1.08999 * 109.86927 * 98.83591 * 12 11 9 40 40 H 1.08999 * 109.86240 * 219.93763 * 12 11 9 41 41 H 0.97005 * 119.99343 * 179.97438 * 17 16 14 42 42 H 1.08997 * 110.40445 * 263.50448 * 22 13 12 43 43 H 1.09001 * 110.40787 * 141.07667 * 22 13 12 44 44 H 1.07993 * 120.16683 * 359.93495 * 24 23 4 45 45 H 1.08008 * 119.84766 * 180.02562 * 25 24 23 46 46 H 1.07993 * 119.68490 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.02975 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2377 1.1126 0.0000 4 6 3.5549 0.7594 -0.0006 5 6 4.7092 1.6683 -0.0002 6 8 5.8390 1.2168 -0.0004 7 7 4.5165 3.0022 0.0000 8 6 3.3493 3.9022 -0.0067 9 6 4.2359 4.9444 0.6570 10 6 5.3814 4.1958 -0.0001 11 6 4.2275 4.9989 2.1912 12 6 3.2211 6.1354 2.4855 13 7 3.1185 6.9575 1.2694 14 6 2.3143 8.0549 1.1151 15 1 2.3709 8.6431 0.2111 16 6 1.4263 8.4117 2.1207 17 7 1.4533 7.7821 3.2762 18 14 0.1930 9.7850 1.8338 19 1 -1.0986 9.2049 1.3861 20 1 -0.0136 10.5368 3.0977 21 1 0.7108 10.7052 0.7895 22 6 4.0249 6.4045 0.2418 23 6 3.5923 -0.7145 -0.0016 24 6 4.6182 -1.6565 -0.0021 25 6 4.3108 -2.9993 -0.0025 26 6 2.9869 -3.4147 -0.0020 27 6 1.9624 -2.4936 0.0034 28 6 2.2521 -1.1330 -0.0005 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3635 0.8901 -0.5135 31 1 -0.3633 -0.8899 -0.5142 32 1 1.8666 2.1269 0.0007 33 1 3.0217 4.1831 -1.0076 34 1 2.5308 3.5583 0.6256 35 1 6.2598 4.0969 0.6377 36 1 5.6235 4.5580 -0.9992 37 1 3.8778 4.0551 2.6095 38 1 5.2167 5.2497 2.5743 39 1 2.2466 5.7130 2.7304 40 1 3.5819 6.7441 3.3146 41 1 0.8330 8.0316 3.9790 42 1 4.9737 6.9411 0.2436 43 1 3.5599 6.4562 -0.7427 44 1 5.6494 -1.3358 -0.0027 45 1 5.1041 -3.7323 -0.0025 46 1 2.7575 -4.4699 -0.0028 47 1 0.9353 -2.8276 0.0042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072901220.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:38 Heat of formation + Delta-G solvation = 86.223868 kcal Electronic energy + Delta-G solvation = -29126.881102 eV Core-core repulsion = 25276.852278 eV Total energy + Delta-G solvation = -3850.028824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.58911 -41.70523 -39.28074 -38.07676 -37.24400 -34.17537 -33.84831 -31.41196 -31.23997 -30.57464 -29.68560 -27.98165 -27.30033 -26.84179 -25.42788 -23.84441 -22.91817 -22.13822 -22.05367 -20.23153 -19.76590 -18.60559 -18.30154 -17.82334 -16.90624 -16.78654 -16.73958 -16.54569 -16.35292 -16.21594 -15.71965 -15.57450 -14.94381 -14.85972 -14.73921 -14.23700 -14.05234 -13.82498 -13.73235 -13.64439 -13.54131 -13.33081 -13.23406 -12.84725 -12.75565 -12.57744 -12.27014 -12.20424 -11.99206 -11.97362 -11.86964 -11.79862 -11.67559 -11.18989 -10.86804 -10.66278 -10.62787 -9.72728 -9.27742 -8.82729 -8.69559 -7.80333 -5.13696 -0.02447 0.55589 0.98022 1.51083 1.51387 1.60506 1.66428 1.87507 2.36221 2.54134 2.95399 3.25712 3.41496 3.53540 3.59690 3.64353 3.68819 3.85690 3.96189 4.09698 4.17379 4.23240 4.26036 4.41745 4.42351 4.47079 4.51128 4.57882 4.63045 4.68709 4.70864 4.71700 4.77497 4.84351 4.88560 4.99456 5.05735 5.14705 5.18992 5.22667 5.45232 5.53921 5.57263 5.68770 5.69680 5.70311 5.81834 6.10475 6.21675 6.24286 6.72800 7.15464 7.20722 7.83140 8.48264 9.30596 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016701 B = 0.002764 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.131325 B =10128.791544 C =11283.551253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.468 5.468 3 C 0.125 3.875 4 C -0.264 4.264 5 C 0.612 3.388 6 O -0.594 6.594 7 N -0.642 5.642 8 C 0.121 3.879 9 C -0.097 4.097 10 C 0.126 3.874 11 C -0.103 4.103 12 C 0.191 3.809 13 N -0.624 5.624 14 C -0.234 4.234 15 H 0.086 0.914 16 C -0.065 4.065 17 N -0.951 5.951 18 Si 0.973 3.027 19 H -0.286 1.286 20 H -0.302 1.302 21 H -0.268 1.268 22 C 0.152 3.848 23 C -0.095 4.095 24 C -0.097 4.097 25 C -0.138 4.138 26 C -0.102 4.102 27 C -0.121 4.121 28 C 0.071 3.929 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.199 0.801 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.017 0.983 40 H 0.000 1.000 41 H 0.245 0.755 42 H 0.033 0.967 43 H 0.061 0.939 44 H 0.108 0.892 45 H 0.145 0.855 46 H 0.161 0.839 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.540 -20.295 -9.236 22.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.148 5.148 3 C -0.009 4.009 4 C -0.275 4.275 5 C 0.407 3.593 6 O -0.477 6.477 7 N -0.376 5.376 8 C -0.001 4.001 9 C -0.098 4.098 10 C 0.004 3.996 11 C -0.141 4.141 12 C 0.066 3.934 13 N -0.350 5.350 14 C -0.363 4.363 15 H 0.104 0.896 16 C -0.258 4.258 17 N -0.600 5.600 18 Si 0.802 3.198 19 H -0.213 1.213 20 H -0.229 1.229 21 H -0.193 1.193 22 C 0.027 3.973 23 C -0.099 4.099 24 C -0.116 4.116 25 C -0.157 4.157 26 C -0.120 4.120 27 C -0.141 4.141 28 C -0.033 4.033 29 H 0.103 0.897 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.215 0.785 33 H 0.131 0.869 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.036 0.964 40 H 0.019 0.981 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.080 0.920 44 H 0.127 0.873 45 H 0.163 0.837 46 H 0.179 0.821 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.440 -20.654 -9.138 22.716 hybrid contribution -0.365 1.247 0.498 1.392 sum -2.805 -19.407 -8.639 21.427 Atomic orbital electron populations 1.22453 0.73679 1.06603 1.04921 1.43939 1.07998 1.03449 1.59416 1.22739 0.89355 0.92823 0.95988 1.19936 0.92487 0.92469 1.22607 1.17004 0.87722 0.79668 0.74944 1.90703 1.26092 1.76325 1.54584 1.49583 1.12316 1.02892 1.72764 1.23084 0.89980 0.85283 1.01755 1.21975 0.97061 0.94842 0.95945 1.22795 0.94707 0.80425 1.01675 1.22254 0.99775 0.98518 0.93582 1.20909 0.94887 0.89402 0.88224 1.44820 1.48017 1.31065 1.11129 1.19450 1.12096 1.02694 1.02028 0.89580 1.25593 1.01738 1.02381 0.96110 1.70197 1.39826 1.45455 1.04537 0.85138 0.79408 0.78746 0.76528 1.21325 1.22880 1.19275 1.21303 0.93370 0.89918 0.92715 1.19078 0.93715 0.91648 1.05477 1.20712 0.98046 0.93088 0.99738 1.21277 0.98062 0.94466 1.01915 1.21237 0.91354 1.00578 0.98873 1.20421 1.01433 0.87786 1.04428 1.18555 0.89090 0.89573 1.06087 0.89674 0.87653 0.87702 0.78496 0.86911 0.89939 0.90781 0.87337 0.91462 0.91143 0.96443 0.98131 0.94612 0.94958 0.92047 0.87347 0.83747 0.82106 0.83020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.62 10.98 127.77 1.40 2.03 16 2 N -0.47 -9.25 3.14 -538.63 -1.69 -10.94 16 3 C 0.12 2.92 10.46 83.70 0.88 3.79 16 4 C -0.26 -8.09 6.27 -19.01 -0.12 -8.21 16 5 C 0.61 21.30 8.05 86.52 0.70 21.99 16 6 O -0.59 -24.81 16.93 -4.26 -0.07 -24.88 16 7 N -0.64 -19.00 3.70 -864.32 -3.19 -22.20 16 8 C 0.12 3.14 6.41 83.76 0.54 3.68 16 9 C -0.10 -2.93 1.06 -52.61 -0.06 -2.99 16 10 C 0.13 3.45 8.03 83.67 0.67 4.12 16 11 C -0.10 -3.68 6.41 31.32 0.20 -3.48 16 12 C 0.19 8.98 5.40 86.81 0.47 9.45 16 13 N -0.62 -29.56 3.41 -693.45 -2.36 -31.92 16 14 C -0.23 -12.25 10.26 84.04 0.86 -11.39 16 15 H 0.09 4.27 7.84 -2.91 -0.02 4.25 16 16 C -0.07 -3.55 5.48 84.86 0.46 -3.09 16 17 N -0.95 -55.37 10.35 21.65 0.22 -55.15 16 18 Si 0.97 43.86 29.56 68.60 2.03 45.89 16 19 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 C 0.15 5.39 6.70 86.23 0.58 5.97 16 23 C -0.09 -2.84 6.27 -20.08 -0.13 -2.96 16 24 C -0.10 -2.77 9.85 22.41 0.22 -2.55 16 25 C -0.14 -2.85 10.03 22.28 0.22 -2.63 16 26 C -0.10 -1.64 10.01 22.28 0.22 -1.42 16 27 C -0.12 -2.08 9.91 22.37 0.22 -1.85 16 28 C 0.07 1.65 6.79 38.91 0.26 1.92 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.73 8.13 -2.39 -0.02 0.71 16 31 H 0.10 0.62 8.04 -2.38 -0.02 0.60 16 32 H 0.20 3.74 5.06 -2.91 -0.01 3.73 16 33 H 0.11 2.43 8.06 -2.39 -0.02 2.41 16 34 H 0.08 2.10 6.25 -2.39 -0.01 2.08 16 35 H 0.07 2.10 8.13 -2.38 -0.02 2.09 16 36 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 38 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.02 0.91 7.30 -2.39 -0.02 0.89 16 40 H 0.00 0.02 7.60 -2.39 -0.02 0.01 16 41 H 0.24 13.97 8.31 -92.70 -0.77 13.20 16 42 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.06 1.98 8.00 -2.39 -0.02 1.96 16 44 H 0.11 3.47 7.45 -2.91 -0.02 3.44 16 45 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 46 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 47 H 0.15 1.55 8.02 -2.91 -0.02 1.52 16 Total: -1.00 -76.76 381.73 3.52 -73.24 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.98 Total: 13.59 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 7.61 Total: 12.37 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -7.03 Total: -120.21 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.07 Total: -24.88 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -76.76 3.52 -73.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072901220.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.466 kcal (2) G-P(sol) polarization free energy of solvation -76.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds