Wall clock time and date at job start Sat Apr 11 2020 05:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35470 * 124.79063 * 2 1 4 4 C 1.36373 * 109.77467 * 180.18604 * 3 2 1 5 5 C 1.46904 * 126.77019 * 179.82817 * 4 3 2 6 6 O 1.21670 * 119.99894 * 172.87434 * 5 4 3 7 7 N 1.34778 * 120.00191 * 352.87121 * 5 4 3 8 8 C 1.47402 * 125.59191 * 182.94335 * 7 5 4 9 9 C 1.54848 * 104.81191 * 204.61031 * 8 7 5 10 10 C 1.55118 * 101.78035 * 322.81697 * 9 8 7 11 11 H 1.08997 * 113.46328 * 159.24492 * 10 9 8 12 12 C 1.54049 * 108.25988 * 286.09263 * 10 9 8 13 13 N 1.46697 * 106.82919 * 135.80504 * 12 10 9 14 14 C 1.36940 * 125.32114 * 161.80043 * 13 12 10 15 15 H 1.07993 * 120.00100 * 359.97438 * 14 13 12 16 16 C 1.38810 * 119.99691 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00633 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99810 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47514 * 89.99575 * 18 16 14 20 20 H 1.48504 * 109.46962 * 209.99997 * 18 16 14 21 21 H 1.48502 * 109.46858 * 329.99584 * 18 16 14 22 22 C 1.46635 * 109.35664 * 341.82192 * 13 12 10 23 23 C 1.46732 * 125.58879 * 2.64398 * 7 5 4 24 24 H 1.09004 * 111.32673 * 56.11948 * 23 7 5 25 25 C 1.47445 * 106.45871 * 359.55971 * 4 3 2 26 26 C 1.39272 * 134.00790 * 180.26889 * 25 4 3 27 27 C 1.37748 * 119.67134 * 180.02562 * 26 25 4 28 28 C 1.38751 * 120.30456 * 359.97438 * 27 26 25 29 29 C 1.37761 * 120.63403 * 359.97438 * 28 27 26 30 30 C 1.37966 * 124.78569 * 179.68619 * 2 1 3 31 31 H 1.08996 * 109.47330 * 270.31081 * 1 2 3 32 32 H 1.09000 * 109.47056 * 30.30832 * 1 2 3 33 33 H 1.09002 * 109.47446 * 150.31181 * 1 2 3 34 34 H 1.08006 * 125.11375 * 0.02562 * 3 2 1 35 35 H 1.09004 * 110.37234 * 323.45010 * 8 7 5 36 36 H 1.09004 * 110.36302 * 85.77591 * 8 7 5 37 37 H 1.08998 * 110.96513 * 80.94176 * 9 8 7 38 38 H 1.09002 * 110.96044 * 204.69449 * 9 8 7 39 39 H 1.08999 * 109.98611 * 255.14878 * 12 10 9 40 40 H 1.08999 * 109.98279 * 16.46268 * 12 10 9 41 41 H 0.97002 * 120.00484 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.75986 * 120.93072 * 22 13 12 43 43 H 1.09003 * 109.75545 * 241.62606 * 22 13 12 44 44 H 1.08007 * 120.16434 * 359.97329 * 26 25 4 45 45 H 1.08009 * 119.84809 * 179.97438 * 27 26 25 46 46 H 1.07998 * 119.68409 * 179.97438 * 28 27 26 47 47 H 1.08005 * 120.03872 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2379 1.1125 0.0000 4 6 3.5551 0.7592 -0.0042 5 6 4.7093 1.6680 -0.0091 6 8 5.8345 1.2229 0.1182 7 7 4.5218 2.9947 -0.1547 8 6 5.5892 4.0078 -0.2384 9 6 4.9237 5.3240 0.2334 10 6 3.4993 5.1912 -0.3662 11 1 2.7598 5.8211 0.1282 12 6 3.5907 5.4309 -1.8852 13 7 2.7717 4.3976 -2.5283 14 6 2.2967 4.4488 -3.8117 15 1 2.5191 5.3013 -4.4362 16 6 1.5284 3.4054 -4.3095 17 7 1.2569 2.3665 -3.5483 18 14 0.8811 3.4749 -6.0604 19 1 1.8701 2.8557 -6.9788 20 1 -0.4031 2.7337 -6.1430 21 1 0.6614 4.8907 -6.4510 22 6 2.5408 3.3016 -1.5819 23 6 3.2219 3.6667 -0.2620 24 1 2.5852 3.4373 0.5925 25 6 3.5922 -0.7147 0.0039 26 6 4.6180 -1.6568 0.0090 27 6 4.3106 -2.9995 0.0158 28 6 2.9867 -3.4147 0.0180 29 6 1.9622 -2.4937 0.0140 30 6 2.2520 -1.1331 0.0062 31 1 -0.3634 0.0056 1.0276 32 1 -0.3633 0.8872 -0.5186 33 1 -0.3634 -0.8928 -0.5090 34 1 1.8668 2.1268 0.0004 35 1 6.4161 3.7432 0.4207 36 1 5.9388 4.1065 -1.2662 37 1 4.8857 5.3735 1.3216 38 1 5.4405 6.1913 -0.1773 39 1 3.2032 6.4197 -2.1304 40 1 4.6262 5.3440 -2.2143 41 1 0.7203 1.6372 -3.8963 42 1 1.4704 3.1715 -1.4229 43 1 2.9696 2.3795 -1.9743 44 1 5.6493 -1.3361 0.0069 45 1 5.1039 -3.7325 0.0194 46 1 2.7572 -4.4700 0.0229 47 1 0.9350 -2.8276 0.0162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076004352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:50 Heat of formation + Delta-G solvation = 82.769639 kcal Electronic energy + Delta-G solvation = -30836.375207 eV Core-core repulsion = 26986.196596 eV Total energy + Delta-G solvation = -3850.178611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31863 -39.94313 -37.57494 -36.83502 -34.64661 -32.92963 -32.02860 -31.23197 -30.04772 -29.10862 -28.28547 -26.86637 -26.15570 -24.75605 -23.15717 -22.46422 -21.32539 -20.80688 -20.53105 -19.71842 -18.59565 -17.25616 -16.87047 -16.17510 -15.76954 -15.40336 -15.20345 -15.03383 -14.86274 -14.34423 -14.04833 -13.87469 -13.67422 -13.39395 -13.22849 -12.85278 -12.74656 -12.56482 -12.42764 -12.23306 -12.14932 -11.88583 -11.48678 -11.34571 -11.14237 -11.05240 -10.97829 -10.77330 -10.69421 -10.53743 -10.26488 -10.25539 -9.96386 -9.78171 -9.35708 -9.29645 -8.69203 -8.13900 -7.93563 -7.33467 -6.90426 -5.79727 -3.12585 1.33504 1.83666 2.42479 2.98934 3.35116 3.40969 3.41828 3.48837 3.85908 4.29897 4.42762 4.76157 4.77103 4.88704 4.92027 5.09495 5.18447 5.24267 5.30415 5.32242 5.38841 5.44161 5.47356 5.60718 5.63538 5.70006 5.75068 5.81623 5.85362 5.95767 5.98671 5.99225 6.05404 6.16592 6.29878 6.30818 6.35660 6.58735 6.66247 6.68676 6.83555 6.84989 6.99934 7.03182 7.22608 7.41750 7.47682 7.48373 7.68940 8.09337 8.17028 8.79030 9.13771 9.74978 10.37667 11.31284 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009439 B = 0.005283 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.818392 B = 5299.172252 C = 7135.498656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.467 5.467 3 C 0.130 3.870 4 C -0.236 4.236 5 C 0.613 3.387 6 O -0.559 6.559 7 N -0.603 5.603 8 C 0.112 3.888 9 C -0.125 4.125 10 C -0.108 4.108 11 H 0.099 0.901 12 C 0.140 3.860 13 N -0.600 5.600 14 C -0.228 4.228 15 H 0.079 0.921 16 C -0.005 4.005 17 N -0.920 5.920 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.165 3.835 23 C 0.095 3.905 24 H 0.078 0.922 25 C -0.056 4.056 26 C -0.065 4.065 27 C -0.149 4.149 28 C -0.109 4.109 29 C -0.126 4.126 30 C 0.086 3.914 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.192 0.808 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.037 0.963 40 H 0.022 0.978 41 H 0.251 0.749 42 H 0.051 0.949 43 H 0.061 0.939 44 H 0.129 0.871 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 -2.814 11.327 11.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.147 5.147 3 C -0.002 4.002 4 C -0.246 4.246 5 C 0.405 3.595 6 O -0.439 6.439 7 N -0.336 5.336 8 C -0.011 4.011 9 C -0.163 4.163 10 C -0.128 4.128 11 H 0.117 0.883 12 C 0.014 3.986 13 N -0.326 5.326 14 C -0.356 4.356 15 H 0.096 0.904 16 C -0.201 4.201 17 N -0.567 5.567 18 Si 0.742 3.258 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.207 1.207 22 C 0.040 3.960 23 C -0.010 4.010 24 H 0.096 0.904 25 C -0.060 4.060 26 C -0.083 4.083 27 C -0.168 4.168 28 C -0.129 4.129 29 C -0.146 4.146 30 C -0.018 4.018 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.209 0.791 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.055 0.945 40 H 0.040 0.960 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.147 0.853 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.531 -3.263 11.247 11.722 hybrid contribution -0.609 0.040 -1.202 1.348 sum -1.140 -3.223 10.045 10.611 Atomic orbital electron populations 1.22030 0.76729 1.05238 1.02560 1.43602 1.06378 1.04275 1.60495 1.23177 0.90053 0.92188 0.94789 1.19773 0.91990 0.92009 1.20871 1.16757 0.87689 0.79732 0.75304 1.90699 1.24842 1.75938 1.52434 1.48129 1.07609 1.05326 1.72530 1.22141 0.90818 0.86776 1.01349 1.22779 0.95859 0.97244 1.00441 1.23121 0.96751 0.94697 0.98221 0.88286 1.21354 0.94947 0.93233 0.89069 1.44158 1.59797 1.17586 1.11068 1.19030 1.25802 1.03609 0.87166 0.90356 1.24751 1.00443 0.96604 0.98318 1.69912 1.42945 1.08850 1.35001 0.86128 0.78080 0.77300 0.84290 1.21643 1.21757 1.20702 1.21538 0.97310 0.92536 0.84638 1.22780 0.85439 0.92743 1.00029 0.90419 1.18728 0.92029 0.91581 1.03683 1.20638 0.98864 0.91547 0.97299 1.20868 0.96202 0.95301 1.04448 1.20693 0.92358 0.98448 1.01360 1.19927 0.99302 0.89051 1.06356 1.18272 0.89906 0.88301 1.05341 0.91411 0.88760 0.90093 0.79122 0.90824 0.91383 0.91056 0.89925 0.94522 0.96045 0.93899 0.93099 0.92095 0.85299 0.86255 0.86146 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 10.98 59.84 0.66 1.56 16 2 N -0.47 -7.53 3.14 -121.60 -0.38 -7.91 16 3 C 0.13 2.30 8.47 -16.62 -0.14 2.16 16 4 C -0.24 -4.70 5.71 -103.31 -0.59 -5.29 16 5 C 0.61 12.82 7.51 -12.75 -0.10 12.72 16 6 O -0.56 -12.80 16.42 5.22 0.09 -12.72 16 7 N -0.60 -11.25 2.99 -164.16 -0.49 -11.74 16 8 C 0.11 1.81 6.45 -2.57 -0.02 1.80 16 9 C -0.12 -1.62 6.35 -24.64 -0.16 -1.77 16 10 C -0.11 -1.67 4.35 -87.73 -0.38 -2.05 16 11 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 12 C 0.14 2.69 6.45 -3.39 -0.02 2.67 16 13 N -0.60 -14.43 3.38 -172.36 -0.58 -15.01 16 14 C -0.23 -6.09 10.25 -15.06 -0.15 -6.24 16 15 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 16 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 17 N -0.92 -25.26 10.24 55.49 0.57 -24.69 16 18 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.17 3.66 3.09 -3.99 -0.01 3.65 16 23 C 0.09 1.66 2.73 -66.61 -0.18 1.48 16 24 H 0.08 1.19 6.44 -51.93 -0.33 0.86 16 25 C -0.06 -1.07 6.27 -104.95 -0.66 -1.72 16 26 C -0.07 -1.14 9.86 -39.38 -0.39 -1.53 16 27 C -0.15 -2.16 10.03 -39.57 -0.40 -2.55 16 28 C -0.11 -1.46 10.01 -39.57 -0.40 -1.86 16 29 C -0.13 -1.80 9.91 -39.43 -0.39 -2.19 16 30 C 0.09 1.46 6.79 -83.96 -0.57 0.89 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.16 8.13 -51.93 -0.42 0.74 16 33 H 0.08 0.86 8.03 -51.93 -0.42 0.44 16 34 H 0.19 3.23 3.11 -52.48 -0.16 3.07 16 35 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16 36 H 0.07 1.19 7.18 -51.93 -0.37 0.82 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.02 0.43 6.52 -51.93 -0.34 0.09 16 41 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 42 H 0.05 1.20 6.46 -51.93 -0.34 0.86 16 43 H 0.06 1.60 5.83 -51.93 -0.30 1.30 16 44 H 0.13 2.32 7.48 -52.48 -0.39 1.93 16 45 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 46 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 47 H 0.12 1.34 8.02 -52.48 -0.42 0.92 16 LS Contribution 365.84 15.07 5.51 5.51 Total: -1.00 -33.12 365.84 -10.72 -43.84 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.42 Total: 4.65 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -3.99 Total: 1.48 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -0.89 Total: -59.35 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.12 -10.72 -43.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076004352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.610 kcal (2) G-P(sol) polarization free energy of solvation -33.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds