Wall clock time and date at job start Sat Apr 11 2020 05:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36562 * 125.07363 * 2 1 4 4 C 1.34451 * 109.98206 * 179.97438 * 3 2 1 5 5 C 1.46256 * 107.03076 * 359.97438 * 4 3 2 6 6 C 1.39916 * 133.83607 * 179.97438 * 5 4 3 7 7 C 1.36211 * 119.95840 * 179.79414 * 6 5 4 8 8 C 1.40236 * 120.37306 * 0.48889 * 7 6 5 9 9 C 1.47583 * 119.82814 * 179.77371 * 8 7 6 10 10 O 1.21592 * 120.00125 * 32.90511 * 9 8 7 11 11 N 1.34784 * 119.99810 * 212.90629 * 9 8 7 12 12 C 1.47343 * 125.52413 * 356.49941 * 11 9 8 13 13 C 1.54948 * 104.90150 * 156.77348 * 12 11 9 14 14 C 1.54784 * 101.45180 * 37.25713 * 13 12 11 15 15 H 1.08999 * 112.84874 * 86.23636 * 14 13 12 16 16 C 1.53519 * 109.68847 * 212.92156 * 14 13 12 17 17 N 1.46652 * 107.04989 * 84.82468 * 16 14 13 18 18 C 1.36933 * 125.29035 * 197.40531 * 17 16 14 19 19 H 1.08004 * 119.99614 * 0.02562 * 18 17 16 20 20 C 1.38808 * 120.00131 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00311 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00117 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47321 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47208 * 120.00065 * 22 20 18 25 25 H 1.48503 * 109.47411 * 240.00222 * 22 20 18 26 26 C 1.46492 * 109.42020 * 17.39097 * 17 16 14 27 27 C 1.48616 * 125.39952 * 177.23697 * 11 9 8 28 28 H 1.08998 * 113.54344 * 56.36746 * 27 11 9 29 29 C 1.39282 * 120.34113 * 359.49431 * 8 7 6 30 30 C 1.37830 * 125.07166 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46819 * 270.02531 * 1 2 3 32 32 H 1.09002 * 109.47152 * 30.02600 * 1 2 3 33 33 H 1.08997 * 109.46867 * 150.02371 * 1 2 3 34 34 H 1.07997 * 125.00473 * 359.97438 * 3 2 1 35 35 H 1.07996 * 126.48315 * 179.97438 * 4 3 2 36 36 H 1.07993 * 120.02244 * 0.02638 * 6 5 4 37 37 H 1.07988 * 119.81142 * 180.26318 * 7 6 5 38 38 H 1.09005 * 110.35022 * 37.91830 * 12 11 9 39 39 H 1.09000 * 110.35449 * 275.63527 * 12 11 9 40 40 H 1.08996 * 111.03113 * 279.21547 * 13 12 11 41 41 H 1.09000 * 111.02583 * 155.29779 * 13 12 11 42 42 H 1.09001 * 109.91479 * 325.48326 * 16 14 13 43 43 H 1.08998 * 109.92303 * 204.18183 * 16 14 13 44 44 H 0.96999 * 120.00861 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.71576 * 117.76029 * 26 17 16 46 46 H 1.09004 * 109.71031 * 238.35799 * 26 17 16 47 47 H 1.08002 * 120.17061 * 180.27672 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2497 1.1176 0.0000 4 6 3.5479 0.7676 0.0006 5 6 3.5973 -0.6941 0.0016 6 6 4.6388 -1.6285 0.0020 7 6 4.3570 -2.9611 0.0073 8 6 3.0267 -3.4046 0.0019 9 6 2.7351 -4.8514 0.0026 10 8 3.4791 -5.6212 0.5791 11 7 1.6442 -5.3193 -0.6358 12 6 0.6257 -4.4936 -1.3080 13 6 -0.0316 -5.4381 -2.3456 14 6 -0.0555 -6.7775 -1.5702 15 1 -0.9386 -6.8864 -0.9407 16 6 0.1244 -7.9456 -2.5500 17 7 1.5665 -8.1186 -2.7527 18 6 2.1430 -8.8083 -3.7857 19 1 1.5222 -9.2783 -4.5341 20 6 3.5252 -8.9035 -3.8708 21 7 4.2817 -8.3312 -2.9584 22 14 4.3116 -9.8450 -5.2795 23 1 3.2505 -10.3917 -6.1630 24 1 5.1839 -8.9310 -6.0598 25 1 5.1256 -10.9615 -4.7353 26 6 2.2944 -7.4384 -1.6787 27 6 1.2681 -6.7516 -0.7609 28 1 1.1719 -7.2618 0.1975 29 6 1.9790 -2.4868 0.0018 30 6 2.2570 -1.1280 0.0005 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5135 34 1 1.8817 2.1330 -0.0004 35 1 4.3939 1.4388 0.0003 36 1 5.6654 -1.2933 0.0020 37 1 5.1627 -3.6802 0.0119 38 1 1.0946 -3.6470 -1.8095 39 1 -0.1157 -4.1459 -0.5886 40 1 0.5795 -5.5175 -3.2446 41 1 -1.0418 -5.1091 -2.5892 42 1 -0.3586 -7.7121 -3.4988 43 1 -0.3028 -8.8546 -2.1266 44 1 5.2476 -8.3973 -3.0180 45 1 2.8702 -8.1660 -1.1068 46 1 2.9647 -6.6917 -2.1044 47 1 0.9555 -2.8314 0.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076428141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:59 Heat of formation + Delta-G solvation = 80.587627 kcal Electronic energy + Delta-G solvation = -29821.551941 eV Core-core repulsion = 25971.278712 eV Total energy + Delta-G solvation = -3850.273230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.45844 -40.02902 -38.05449 -36.46543 -34.92593 -33.11507 -32.17055 -30.63618 -30.48378 -29.46955 -28.35966 -26.70898 -26.42957 -24.47833 -23.79178 -22.34980 -21.85119 -20.84581 -20.17599 -19.46030 -18.69856 -17.29005 -17.08807 -16.67565 -16.14735 -15.67320 -15.45287 -15.13009 -14.61353 -14.56030 -14.31112 -13.82967 -13.67867 -13.44402 -13.35697 -13.16687 -13.01391 -12.74271 -12.57922 -12.49172 -12.15709 -11.80646 -11.71375 -11.45443 -11.29230 -11.18803 -10.96199 -10.90472 -10.75633 -10.44193 -10.15735 -10.01306 -9.82612 -9.72461 -9.66014 -9.42840 -8.53884 -8.29212 -8.10724 -7.74205 -6.75913 -5.62122 -2.98990 0.84692 1.54171 2.47513 2.59388 3.20104 3.37093 3.44345 3.48837 3.52268 4.00936 4.44631 4.48669 4.54783 4.61202 4.69649 4.84617 4.85836 4.98433 5.10842 5.16538 5.20631 5.32182 5.37144 5.46734 5.50161 5.55763 5.59916 5.66084 5.74431 5.83112 5.84560 5.91373 5.96286 6.07198 6.22612 6.38018 6.40728 6.52197 6.61636 6.62185 6.63793 6.65933 6.68025 6.88845 7.08731 7.10846 7.64216 7.69133 7.96340 8.00711 8.35389 8.63038 9.28836 9.89759 10.52546 11.47230 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015206 B = 0.003243 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.890602 B = 8632.236348 C = 9484.140521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.488 5.488 3 C 0.053 3.947 4 C -0.209 4.209 5 C -0.092 4.092 6 C -0.080 4.080 7 C -0.090 4.090 8 C -0.095 4.095 9 C 0.571 3.429 10 O -0.524 6.524 11 N -0.602 5.602 12 C 0.100 3.900 13 C -0.121 4.121 14 C -0.112 4.112 15 H 0.087 0.913 16 C 0.145 3.855 17 N -0.602 5.602 18 C -0.234 4.234 19 H 0.079 0.921 20 C -0.006 4.006 21 N -0.913 5.913 22 Si 0.910 3.090 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.179 3.821 27 C 0.116 3.884 28 H 0.084 0.916 29 C -0.101 4.101 30 C 0.084 3.916 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.167 0.833 35 H 0.147 0.853 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.017 0.983 44 H 0.252 0.748 45 H 0.045 0.955 46 H 0.057 0.943 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.137 20.662 6.574 23.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.171 5.171 3 C -0.073 4.073 4 C -0.234 4.234 5 C -0.097 4.097 6 C -0.099 4.099 7 C -0.110 4.110 8 C -0.099 4.099 9 C 0.360 3.640 10 O -0.400 6.400 11 N -0.336 5.336 12 C -0.023 4.023 13 C -0.159 4.159 14 C -0.132 4.132 15 H 0.105 0.895 16 C 0.018 3.982 17 N -0.329 5.329 18 C -0.362 4.362 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.559 5.559 22 Si 0.741 3.259 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.053 3.947 27 C 0.013 3.987 28 H 0.102 0.898 29 C -0.122 4.122 30 C -0.021 4.021 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.185 0.815 35 H 0.164 0.836 36 H 0.145 0.855 37 H 0.153 0.847 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.034 0.966 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.810 20.232 6.849 23.505 hybrid contribution 0.343 -0.343 -0.721 0.869 sum -9.467 19.889 6.128 22.864 Atomic orbital electron populations 1.21950 0.77194 1.04284 1.02982 1.43758 1.05828 1.04257 1.63295 1.21794 0.90558 0.91010 1.03915 1.21692 0.95953 0.92864 1.12861 1.19362 0.92098 0.93598 1.04662 1.20193 0.98085 0.91534 1.00067 1.20715 0.95420 0.95646 0.99184 1.19625 0.93833 0.92401 1.04068 1.17790 0.80060 0.87324 0.78848 1.90823 1.47326 1.57995 1.43885 1.48785 1.22916 1.07976 1.53969 1.22497 0.90384 0.94906 0.94488 1.22776 1.00599 0.94060 0.98496 1.22950 0.96702 0.96382 0.97179 0.89496 1.21068 0.87910 0.93612 0.95567 1.44144 0.98958 1.62021 1.27792 1.19033 0.89820 1.26033 1.01343 0.90361 1.24848 0.96172 1.00626 0.98625 1.70012 1.03872 1.47514 1.34533 0.86078 0.79258 0.79152 0.81438 1.20548 1.21803 1.21745 1.21266 0.90427 0.95508 0.87456 1.23113 0.95656 0.80594 0.99326 0.89774 1.20431 0.99454 0.89008 1.03346 1.18064 0.90240 0.87965 1.05822 0.91308 0.89894 0.90006 0.81550 0.83558 0.85456 0.84731 0.90646 0.92136 0.89459 0.90589 0.94386 0.96579 0.93702 0.93680 0.92496 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 11.02 59.85 0.66 1.11 16 2 N -0.49 -4.70 3.18 -121.85 -0.39 -5.08 16 3 C 0.05 0.45 11.28 -16.78 -0.19 0.26 16 4 C -0.21 -2.12 11.08 -37.70 -0.42 -2.54 16 5 C -0.09 -1.20 6.37 -105.05 -0.67 -1.87 16 6 C -0.08 -1.08 10.03 -39.68 -0.40 -1.48 16 7 C -0.09 -1.43 9.52 -39.56 -0.38 -1.80 16 8 C -0.09 -1.58 5.58 -104.95 -0.59 -2.16 16 9 C 0.57 11.37 7.25 -12.45 -0.09 11.28 16 10 O -0.52 -12.51 16.91 5.29 0.09 -12.42 16 11 N -0.60 -11.02 2.85 -162.04 -0.46 -11.48 16 12 C 0.10 1.39 5.06 -2.55 -0.01 1.37 16 13 C -0.12 -1.76 6.35 -24.76 -0.16 -1.92 16 14 C -0.11 -1.86 3.92 -88.26 -0.35 -2.21 16 15 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 16 C 0.15 2.93 6.51 -3.69 -0.02 2.91 16 17 N -0.60 -15.59 3.37 -172.28 -0.58 -16.17 16 18 C -0.23 -6.62 10.25 -15.06 -0.15 -6.78 16 19 H 0.08 2.13 7.83 -52.48 -0.41 1.71 16 20 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 21 N -0.91 -28.11 10.23 55.49 0.57 -27.55 16 22 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 26 C 0.18 4.62 4.71 -3.60 -0.02 4.60 16 27 C 0.12 2.32 3.90 -65.17 -0.25 2.07 16 28 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 29 C -0.10 -1.38 7.79 -39.03 -0.30 -1.68 16 30 C 0.08 1.07 6.80 -84.00 -0.57 0.50 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 34 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.13 2.21 7.95 -52.49 -0.42 1.80 16 38 H 0.08 1.01 6.55 -51.93 -0.34 0.67 16 39 H 0.06 0.66 7.13 -51.93 -0.37 0.29 16 40 H 0.09 1.54 7.93 -51.93 -0.41 1.13 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.74 7.94 -51.93 -0.41 0.32 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.25 7.60 8.31 -40.82 -0.34 7.27 16 45 H 0.05 1.35 7.51 -51.93 -0.39 0.96 16 46 H 0.06 1.67 6.86 -51.93 -0.36 1.32 16 47 H 0.13 1.50 5.09 -52.49 -0.27 1.24 16 LS Contribution 374.53 15.07 5.64 5.64 Total: -1.00 -36.33 374.53 -10.89 -47.22 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.74 Total: 0.81 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -4.00 Total: 1.39 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.86 Total: -60.28 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.42 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.33 -10.89 -47.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076428141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.805 kcal (2) G-P(sol) polarization free energy of solvation -36.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds