Wall clock time and date at job start Sat Apr 11 2020 05:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36562 * 125.07363 * 2 1 4 4 C 1.34451 * 109.98206 * 179.97438 * 3 2 1 5 5 C 1.46256 * 107.03076 * 359.97438 * 4 3 2 6 6 C 1.39916 * 133.83607 * 179.97438 * 5 4 3 7 7 C 1.36211 * 119.95840 * 179.79414 * 6 5 4 8 8 C 1.40236 * 120.37306 * 0.48889 * 7 6 5 9 9 C 1.47583 * 119.82814 * 179.77371 * 8 7 6 10 10 O 1.21592 * 120.00125 * 32.90511 * 9 8 7 11 11 N 1.34784 * 119.99810 * 212.90629 * 9 8 7 12 12 C 1.47343 * 125.52413 * 356.49941 * 11 9 8 13 13 C 1.54948 * 104.90150 * 156.77348 * 12 11 9 14 14 C 1.54784 * 101.45180 * 37.25713 * 13 12 11 15 15 H 1.08999 * 112.84874 * 86.23636 * 14 13 12 16 16 C 1.53519 * 109.68847 * 212.92156 * 14 13 12 17 17 N 1.46652 * 107.04989 * 84.82468 * 16 14 13 18 18 C 1.36933 * 125.29035 * 197.40531 * 17 16 14 19 19 H 1.08004 * 119.99614 * 0.02562 * 18 17 16 20 20 C 1.38808 * 120.00131 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00311 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00117 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47321 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47208 * 120.00065 * 22 20 18 25 25 H 1.48503 * 109.47411 * 240.00222 * 22 20 18 26 26 C 1.46492 * 109.42020 * 17.39097 * 17 16 14 27 27 C 1.48616 * 125.39952 * 177.23697 * 11 9 8 28 28 H 1.08998 * 113.54344 * 56.36746 * 27 11 9 29 29 C 1.39282 * 120.34113 * 359.49431 * 8 7 6 30 30 C 1.37830 * 125.07166 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46819 * 270.02531 * 1 2 3 32 32 H 1.09002 * 109.47152 * 30.02600 * 1 2 3 33 33 H 1.08997 * 109.46867 * 150.02371 * 1 2 3 34 34 H 1.07997 * 125.00473 * 359.97438 * 3 2 1 35 35 H 1.07996 * 126.48315 * 179.97438 * 4 3 2 36 36 H 1.07993 * 120.02244 * 0.02638 * 6 5 4 37 37 H 1.07988 * 119.81142 * 180.26318 * 7 6 5 38 38 H 1.09005 * 110.35022 * 37.91830 * 12 11 9 39 39 H 1.09000 * 110.35449 * 275.63527 * 12 11 9 40 40 H 1.08996 * 111.03113 * 279.21547 * 13 12 11 41 41 H 1.09000 * 111.02583 * 155.29779 * 13 12 11 42 42 H 1.09001 * 109.91479 * 325.48326 * 16 14 13 43 43 H 1.08998 * 109.92303 * 204.18183 * 16 14 13 44 44 H 0.96999 * 120.00861 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.71576 * 117.76029 * 26 17 16 46 46 H 1.09004 * 109.71031 * 238.35799 * 26 17 16 47 47 H 1.08002 * 120.17061 * 180.27672 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2497 1.1176 0.0000 4 6 3.5479 0.7676 0.0006 5 6 3.5973 -0.6941 0.0016 6 6 4.6388 -1.6285 0.0020 7 6 4.3570 -2.9611 0.0073 8 6 3.0267 -3.4046 0.0019 9 6 2.7351 -4.8514 0.0026 10 8 3.4791 -5.6212 0.5791 11 7 1.6442 -5.3193 -0.6358 12 6 0.6257 -4.4936 -1.3080 13 6 -0.0316 -5.4381 -2.3456 14 6 -0.0555 -6.7775 -1.5702 15 1 -0.9386 -6.8864 -0.9407 16 6 0.1244 -7.9456 -2.5500 17 7 1.5665 -8.1186 -2.7527 18 6 2.1430 -8.8083 -3.7857 19 1 1.5222 -9.2783 -4.5341 20 6 3.5252 -8.9035 -3.8708 21 7 4.2817 -8.3312 -2.9584 22 14 4.3116 -9.8450 -5.2795 23 1 3.2505 -10.3917 -6.1630 24 1 5.1839 -8.9310 -6.0598 25 1 5.1256 -10.9615 -4.7353 26 6 2.2944 -7.4384 -1.6787 27 6 1.2681 -6.7516 -0.7609 28 1 1.1719 -7.2618 0.1975 29 6 1.9790 -2.4868 0.0018 30 6 2.2570 -1.1280 0.0005 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5135 34 1 1.8817 2.1330 -0.0004 35 1 4.3939 1.4388 0.0003 36 1 5.6654 -1.2933 0.0020 37 1 5.1627 -3.6802 0.0119 38 1 1.0946 -3.6470 -1.8095 39 1 -0.1157 -4.1459 -0.5886 40 1 0.5795 -5.5175 -3.2446 41 1 -1.0418 -5.1091 -2.5892 42 1 -0.3586 -7.7121 -3.4988 43 1 -0.3028 -8.8546 -2.1266 44 1 5.2476 -8.3973 -3.0180 45 1 2.8702 -8.1660 -1.1068 46 1 2.9647 -6.6917 -2.1044 47 1 0.9555 -2.8314 0.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076428141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:58 Heat of formation + Delta-G solvation = 57.332915 kcal Electronic energy + Delta-G solvation = -29822.560341 eV Core-core repulsion = 25971.278712 eV Total energy + Delta-G solvation = -3851.281630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.36157 -41.44990 -39.54165 -37.63204 -36.66914 -34.33275 -33.65192 -32.25704 -31.51397 -30.72843 -29.86884 -28.30879 -27.11352 -26.44473 -25.01920 -23.42540 -23.05135 -22.30133 -21.48157 -20.75222 -20.08347 -18.95026 -18.31445 -17.95727 -17.30249 -17.19168 -16.54284 -16.43872 -16.18163 -15.83522 -15.58566 -15.25671 -15.03353 -14.76191 -14.60016 -14.25932 -14.09750 -13.85199 -13.72727 -13.67067 -13.36166 -13.24164 -13.11406 -12.94093 -12.80281 -12.74897 -12.64193 -12.23913 -12.13522 -11.98239 -11.88105 -11.74919 -11.51900 -11.46182 -11.00411 -10.75245 -10.64022 -9.71371 -9.20585 -8.91415 -8.59369 -7.84781 -5.24456 -0.19664 0.45761 1.40937 1.43569 1.54082 1.59746 1.81424 1.89387 2.10044 2.47114 2.87775 3.30392 3.32968 3.54956 3.63325 3.75191 3.80904 3.90899 3.98371 4.01885 4.11984 4.26799 4.32692 4.35108 4.46662 4.51543 4.52469 4.55825 4.59419 4.67083 4.74101 4.81484 4.83300 4.94079 4.99456 5.01431 5.08978 5.15812 5.17452 5.30346 5.43727 5.48642 5.50226 5.60872 5.68478 5.76477 5.78762 6.17136 6.17690 6.42829 6.54264 7.05176 7.14264 7.77393 8.38485 9.23333 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015206 B = 0.003243 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.890602 B = 8632.236348 C = 9484.140521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.483 5.483 3 C 0.078 3.922 4 C -0.232 4.232 5 C -0.107 4.107 6 C -0.082 4.082 7 C -0.118 4.118 8 C -0.128 4.128 9 C 0.562 3.438 10 O -0.587 6.587 11 N -0.604 5.604 12 C 0.097 3.903 13 C -0.113 4.113 14 C -0.092 4.092 15 H 0.139 0.861 16 C 0.135 3.865 17 N -0.623 5.623 18 C -0.239 4.239 19 H 0.092 0.908 20 C -0.074 4.074 21 N -0.953 5.953 22 Si 0.981 3.019 23 H -0.256 1.256 24 H -0.294 1.294 25 H -0.296 1.296 26 C 0.201 3.799 27 C 0.116 3.884 28 H 0.080 0.920 29 C -0.080 4.080 30 C 0.068 3.932 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.215 0.785 35 H 0.165 0.835 36 H 0.144 0.856 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.047 0.953 41 H 0.131 0.869 42 H 0.055 0.945 43 H 0.025 0.975 44 H 0.241 0.759 45 H -0.018 1.018 46 H 0.008 0.992 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.954 24.421 5.844 29.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.165 5.165 3 C -0.049 4.049 4 C -0.256 4.256 5 C -0.113 4.113 6 C -0.100 4.100 7 C -0.138 4.138 8 C -0.132 4.132 9 C 0.353 3.647 10 O -0.468 6.468 11 N -0.336 5.336 12 C -0.024 4.024 13 C -0.151 4.151 14 C -0.111 4.111 15 H 0.157 0.843 16 C 0.011 3.989 17 N -0.350 5.350 18 C -0.368 4.368 19 H 0.110 0.890 20 C -0.266 4.266 21 N -0.602 5.602 22 Si 0.809 3.191 23 H -0.180 1.180 24 H -0.222 1.222 25 H -0.223 1.223 26 C 0.075 3.925 27 C 0.012 3.988 28 H 0.098 0.902 29 C -0.100 4.100 30 C -0.038 4.038 31 H 0.100 0.900 32 H 0.131 0.869 33 H 0.106 0.894 34 H 0.231 0.769 35 H 0.183 0.817 36 H 0.162 0.838 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.129 0.871 40 H 0.066 0.934 41 H 0.149 0.851 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.050 0.950 45 H 0.000 1.000 46 H 0.026 0.974 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.740 24.017 6.086 28.830 hybrid contribution 1.756 -1.375 -0.495 2.284 sum -12.984 22.642 5.591 26.693 Atomic orbital electron populations 1.22338 0.74468 1.06174 1.04432 1.44129 1.07495 1.03280 1.61604 1.22573 0.89790 0.92447 1.00078 1.22021 0.97877 0.91339 1.14400 1.19790 0.92209 0.95330 1.03931 1.20315 0.99536 0.90600 0.99552 1.20617 0.94952 0.96470 1.01779 1.19365 0.94982 0.90752 1.08138 1.18467 0.79597 0.88629 0.77985 1.90766 1.49379 1.59871 1.46817 1.48870 1.23485 1.07735 1.53488 1.22874 0.90000 0.94252 0.95255 1.22791 1.02874 0.92822 0.96600 1.23024 0.95899 0.95950 0.96198 0.84349 1.21378 0.84392 0.95620 0.97559 1.44454 1.01803 1.61611 1.27092 1.19541 0.90253 1.25219 1.01830 0.89022 1.25810 0.97065 1.02308 1.01457 1.70332 1.03240 1.49702 1.36920 0.84970 0.78408 0.77308 0.78421 1.17953 1.22169 1.22331 1.20751 0.91274 0.92952 0.87544 1.22884 0.96142 0.81494 0.98233 0.90201 1.20449 0.99358 0.89026 1.01181 1.18125 0.90977 0.88529 1.06201 0.90034 0.86946 0.89365 0.76862 0.81718 0.83827 0.87588 0.90186 0.87147 0.93390 0.85110 0.92682 0.95726 0.94960 0.99994 0.97427 0.82806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 11.02 127.77 1.41 1.79 16 2 N -0.48 -7.10 3.18 -539.42 -1.71 -8.81 16 3 C 0.08 0.93 11.28 83.09 0.94 1.87 16 4 C -0.23 -4.02 11.08 23.49 0.26 -3.76 16 5 C -0.11 -2.68 6.37 -20.14 -0.13 -2.81 16 6 C -0.08 -2.32 10.03 22.20 0.22 -2.10 16 7 C -0.12 -4.18 9.52 22.28 0.21 -3.97 16 8 C -0.13 -4.52 5.58 -20.07 -0.11 -4.64 16 9 C 0.56 24.27 7.25 86.71 0.63 24.89 16 10 O -0.59 -31.48 16.91 -4.00 -0.07 -31.54 16 11 N -0.60 -22.64 2.85 -784.82 -2.24 -24.88 16 12 C 0.10 2.40 5.06 86.88 0.44 2.84 16 13 C -0.11 -2.87 6.35 31.87 0.20 -2.67 16 14 C -0.09 -2.77 3.92 -9.27 -0.04 -2.81 16 15 H 0.14 2.93 8.14 -2.39 -0.02 2.91 16 16 C 0.14 5.29 6.51 86.52 0.56 5.85 16 17 N -0.62 -33.47 3.37 -698.96 -2.36 -35.83 16 18 C -0.24 -13.97 10.25 84.03 0.86 -13.11 16 19 H 0.09 4.97 7.83 -2.91 -0.02 4.95 16 20 C -0.07 -4.50 5.48 84.86 0.47 -4.04 16 21 N -0.95 -63.68 10.23 21.65 0.22 -63.46 16 22 Si 0.98 48.57 29.55 68.60 2.03 50.60 16 23 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 25 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 26 C 0.20 11.26 4.71 86.67 0.41 11.66 16 27 C 0.12 4.81 3.90 45.62 0.18 4.99 16 28 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 29 C -0.08 -2.06 7.79 22.63 0.18 -1.89 16 30 C 0.07 1.58 6.80 38.96 0.26 1.84 16 31 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.09 0.44 8.10 -2.39 -0.02 0.42 16 34 H 0.21 0.51 8.06 -2.91 -0.02 0.48 16 35 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 36 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 37 H 0.11 4.17 7.95 -2.92 -0.02 4.15 16 38 H 0.08 1.96 6.55 -2.38 -0.02 1.94 16 39 H 0.11 1.74 7.13 -2.39 -0.02 1.72 16 40 H 0.05 1.62 7.93 -2.39 -0.02 1.60 16 41 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.06 1.99 7.94 -2.39 -0.02 1.97 16 43 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.24 15.86 8.31 -92.71 -0.77 15.09 16 45 H -0.02 -1.22 7.51 -2.39 -0.02 -1.23 16 46 H 0.01 0.49 6.86 -2.38 -0.02 0.47 16 47 H 0.15 3.03 5.09 -2.91 -0.01 3.02 16 Total: -1.00 -93.08 374.53 3.80 -89.27 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.98 Total: 10.69 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 6.95 Total: 13.96 kcal Atomic # 7 Polarization: -126.89 SS G_CDS: -6.09 Total: -132.98 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.07 Total: -31.54 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Total: -93.08 3.80 -89.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076428141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.607 kcal (2) G-P(sol) polarization free energy of solvation -93.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds