Wall clock time and date at job start Sat Apr 11 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36452 * 124.85157 * 2 1 4 4 C 1.34484 * 108.86103 * 180.02562 * 3 2 1 5 5 C 1.46689 * 106.32898 * 359.97438 * 4 3 2 6 6 C 1.47269 * 126.93856 * 179.97438 * 5 4 3 7 7 O 1.21624 * 119.99544 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00013 * 0.03186 * 6 5 4 9 9 C 1.47423 * 125.64659 * 180.02562 * 8 6 5 10 10 C 1.55126 * 104.94104 * 203.96813 * 9 8 6 11 11 H 1.09006 * 110.93534 * 81.21994 * 10 9 8 12 12 C 1.50698 * 111.16144 * 205.12935 * 10 9 8 13 13 C 1.38241 * 119.99707 * 51.89863 * 12 10 9 14 14 C 1.38241 * 119.99859 * 179.80840 * 13 12 10 15 15 C 1.38237 * 119.99803 * 0.39572 * 14 13 12 16 16 C 1.38235 * 120.00017 * 359.85897 * 15 14 13 17 17 C 1.38231 * 120.00291 * 359.95285 * 16 15 14 18 18 C 1.55159 * 101.48752 * 323.22502 * 10 9 8 19 19 H 1.09001 * 110.71634 * 276.83041 * 18 10 9 20 20 N 1.46494 * 110.71736 * 153.73723 * 18 10 9 21 21 C 1.36945 * 119.99612 * 157.44241 * 20 18 10 22 22 H 1.07999 * 120.00077 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99637 * 179.97438 * 21 20 18 24 24 N 1.31624 * 119.99539 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00216 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46712 * 90.00052 * 25 23 21 27 27 H 1.48499 * 109.46916 * 209.99467 * 25 23 21 28 28 H 1.48492 * 109.46909 * 330.00070 * 25 23 21 29 29 C 1.47020 * 125.65071 * 359.97438 * 8 6 5 30 30 C 1.34663 * 124.85749 * 180.33248 * 2 1 3 31 31 H 1.08998 * 109.46940 * 89.97965 * 1 2 3 32 32 H 1.09004 * 109.46898 * 209.97336 * 1 2 3 33 33 H 1.08998 * 109.47703 * 329.97400 * 1 2 3 34 34 H 1.08002 * 125.56851 * 359.97438 * 3 2 1 35 35 H 1.07997 * 126.83453 * 179.97438 * 4 3 2 36 36 H 1.08994 * 110.36680 * 322.93059 * 9 8 6 37 37 H 1.08998 * 110.36531 * 85.15048 * 9 8 6 38 38 H 1.07997 * 120.00085 * 359.97438 * 13 12 10 39 39 H 1.07998 * 119.99618 * 180.23538 * 14 13 12 40 40 H 1.07999 * 119.99744 * 179.83282 * 15 14 13 41 41 H 1.07999 * 119.99966 * 179.97438 * 16 15 14 42 42 H 1.08002 * 120.00143 * 179.97438 * 17 16 15 43 43 H 0.96995 * 120.00290 * 337.71132 * 20 18 10 44 44 H 0.97005 * 119.99727 * 180.02562 * 24 23 21 45 45 H 1.09001 * 109.88519 * 59.55665 * 29 8 6 46 46 H 1.09008 * 110.00930 * 298.46760 * 29 8 6 47 47 H 1.08002 * 125.79389 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7493 -0.0006 5 6 3.5461 -0.7176 -0.0003 6 6 4.7284 -1.5956 -0.0013 7 8 4.5885 -2.8038 -0.0014 8 7 5.9653 -1.0604 -0.0019 9 6 7.2296 -1.8186 -0.0034 10 6 8.2775 -0.8502 0.6053 11 1 8.2212 -0.8496 1.6939 12 6 9.6693 -1.1916 0.1389 13 6 9.9311 -1.3302 -1.2114 14 6 11.2087 -1.6395 -1.6395 15 6 12.2225 -1.8182 -0.7169 16 6 11.9594 -1.6848 0.6336 17 6 10.6828 -1.3717 1.0615 18 6 7.8143 0.5116 0.0237 19 1 8.2058 0.6538 -0.9836 20 7 8.2233 1.6142 0.8971 21 6 8.3411 2.8812 0.3909 22 1 8.1328 3.0674 -0.6524 23 6 8.7281 3.9261 1.2186 24 7 8.8408 5.1439 0.7321 25 14 9.0876 3.6042 3.0233 26 1 10.5247 3.2690 3.1894 27 1 8.7677 4.8185 3.8159 28 1 8.2564 2.4693 3.4987 29 6 6.2773 0.3763 -0.0022 30 6 2.2345 -1.1050 -0.0064 31 1 -0.3633 0.0004 -1.0277 32 1 -0.3633 -0.8903 0.5134 33 1 -0.3634 0.8897 0.5142 34 1 1.8827 2.1373 -0.0004 35 1 4.3980 1.4019 -0.0011 36 1 7.1361 -2.7134 0.6120 37 1 7.5097 -2.0871 -1.0220 38 1 9.1383 -1.1942 -1.9319 39 1 11.4140 -1.7440 -2.6946 40 1 13.2199 -2.0625 -1.0512 41 1 12.7513 -1.8248 1.3545 42 1 10.4772 -1.2679 2.1167 43 1 8.4145 1.4462 1.8331 44 1 9.1116 5.8741 1.3105 45 1 5.8488 0.8490 0.8816 46 1 5.8789 0.8443 -0.9025 47 1 1.8767 -2.1240 -0.0127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081106569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:04 Heat of formation + Delta-G solvation = 73.482286 kcal Electronic energy + Delta-G solvation = -29134.284889 eV Core-core repulsion = 25283.703548 eV Total energy + Delta-G solvation = -3850.581340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.20461 -39.88773 -38.65428 -37.05346 -34.14147 -33.11926 -32.28335 -31.16780 -30.69199 -29.20999 -28.61175 -27.85679 -26.46333 -24.30765 -23.20848 -22.50121 -21.71520 -20.69013 -20.32776 -19.83852 -18.94467 -17.68309 -17.18411 -16.78358 -15.96273 -15.75278 -15.46478 -15.04472 -14.73253 -14.66859 -14.46354 -13.89032 -13.74941 -13.38304 -13.26323 -13.19436 -12.98275 -12.92573 -12.66809 -12.58490 -12.44119 -12.37653 -12.10828 -11.98426 -11.84348 -11.28165 -11.04348 -10.96972 -10.74746 -10.61621 -10.49861 -10.09892 -9.69265 -9.62003 -9.04620 -8.68482 -8.57345 -8.44510 -8.38743 -8.11445 -7.36573 -5.82932 -3.20198 1.58230 1.63978 1.87605 2.53225 2.76507 3.34372 3.37193 3.39950 3.44027 3.80100 3.98747 4.52691 4.54183 4.80012 4.87037 4.88832 4.93081 4.96219 5.04203 5.11490 5.18679 5.21084 5.29140 5.37336 5.42840 5.53510 5.58087 5.62094 5.70100 5.73399 5.78160 5.93424 5.98361 6.01391 6.14533 6.19392 6.23714 6.29291 6.39967 6.59590 6.65935 6.71624 6.75470 6.82241 6.90378 7.08313 7.21999 7.22942 7.88045 7.93072 8.35467 8.56624 9.12121 9.84608 10.02721 11.34767 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008592 B = 0.004113 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.058882 B = 6805.235621 C = 9349.914540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.450 5.450 3 C -0.024 4.024 4 C -0.168 4.168 5 C -0.228 4.228 6 C 0.605 3.395 7 O -0.568 6.568 8 N -0.609 5.609 9 C 0.122 3.878 10 C -0.079 4.079 11 H 0.090 0.910 12 C -0.051 4.051 13 C -0.112 4.112 14 C -0.118 4.118 15 C -0.129 4.129 16 C -0.119 4.119 17 C -0.111 4.111 18 C 0.187 3.813 19 H 0.077 0.923 20 N -0.734 5.734 21 C -0.248 4.248 22 H 0.093 0.907 23 C 0.012 3.988 24 N -0.929 5.929 25 Si 0.879 3.121 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.276 1.276 29 C 0.074 3.926 30 C 0.067 3.933 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.167 0.833 35 H 0.163 0.837 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.364 0.636 44 H 0.260 0.740 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.914 -13.040 -2.157 15.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.126 5.126 3 C -0.150 4.150 4 C -0.191 4.191 5 C -0.238 4.238 6 C 0.397 3.603 7 O -0.449 6.449 8 N -0.341 5.341 9 C -0.001 4.001 10 C -0.099 4.099 11 H 0.108 0.892 12 C -0.051 4.051 13 C -0.130 4.130 14 C -0.136 4.136 15 C -0.147 4.147 16 C -0.138 4.138 17 C -0.129 4.129 18 C 0.075 3.925 19 H 0.095 0.905 20 N -0.375 5.375 21 C -0.378 4.378 22 H 0.110 0.890 23 C -0.184 4.184 24 N -0.576 5.576 25 Si 0.710 3.290 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.202 1.202 29 C -0.052 4.052 30 C -0.068 4.068 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.184 0.816 35 H 0.180 0.820 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.197 0.803 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -9.408 -13.402 -2.297 16.535 hybrid contribution 0.250 0.207 1.362 1.401 sum -9.158 -13.195 -0.934 16.088 Atomic orbital electron populations 1.22075 0.77238 1.04473 1.03342 1.43619 1.06567 1.06019 1.56412 1.21850 0.90688 0.91155 1.11314 1.22833 0.96827 0.93574 1.05904 1.20272 0.92176 0.93548 1.17793 1.17039 0.81300 0.86492 0.75470 1.90723 1.86224 1.14758 1.53169 1.48203 1.04632 1.08520 1.72754 1.22209 0.82301 0.94755 1.00874 1.21731 0.90646 0.96616 1.00910 0.89204 1.19484 0.94378 0.97846 0.93413 1.20987 0.96954 0.99793 0.95238 1.21066 0.93115 1.00126 0.99311 1.21059 0.98894 1.01387 0.93379 1.21061 0.96580 1.00279 0.95834 1.21017 0.92869 0.99719 0.99334 1.21283 0.90080 0.85661 0.95469 0.90474 1.42670 1.81740 1.05017 1.08058 1.19047 1.39589 0.82651 0.96508 0.88957 1.24632 1.01143 0.95240 0.97427 1.69698 1.53480 0.99357 1.35101 0.86630 0.78418 0.77140 0.86854 1.20967 1.21724 1.20220 1.23488 0.99821 0.79728 1.02123 1.21677 0.89809 0.91552 1.03744 0.90830 0.89829 0.89658 0.81603 0.81983 0.90599 0.91255 0.86053 0.86362 0.86586 0.86460 0.86344 0.80274 0.92981 0.90321 0.91235 0.81119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 11.03 59.84 0.66 1.08 16 2 N -0.45 -4.82 3.09 -124.54 -0.38 -5.20 16 3 C -0.02 -0.29 11.34 -16.82 -0.19 -0.48 16 4 C -0.17 -2.44 9.39 -37.50 -0.35 -2.80 16 5 C -0.23 -3.55 6.23 -103.35 -0.64 -4.19 16 6 C 0.61 10.67 7.84 -12.59 -0.10 10.57 16 7 O -0.57 -11.24 17.17 5.26 0.09 -11.15 16 8 N -0.61 -10.07 3.33 -171.71 -0.57 -10.64 16 9 C 0.12 1.84 6.32 -2.41 -0.02 1.83 16 10 C -0.08 -1.23 2.89 -89.51 -0.26 -1.49 16 11 H 0.09 1.41 7.83 -51.93 -0.41 1.01 16 12 C -0.05 -0.77 5.00 -104.62 -0.52 -1.29 16 13 C -0.11 -1.59 8.31 -39.58 -0.33 -1.92 16 14 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 15 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 16 C -0.12 -1.59 10.05 -39.59 -0.40 -1.98 16 17 C -0.11 -1.62 9.69 -39.58 -0.38 -2.01 16 18 C 0.19 3.36 3.01 -66.10 -0.20 3.16 16 19 H 0.08 1.44 7.19 -51.93 -0.37 1.07 16 20 N -0.73 -16.12 4.97 -51.65 -0.26 -16.37 16 21 C -0.25 -6.55 10.45 -15.06 -0.16 -6.71 16 22 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 23 C 0.01 0.33 5.50 -17.43 -0.10 0.24 16 24 N -0.93 -28.10 13.97 55.49 0.78 -27.33 16 25 Si 0.88 21.35 27.73 -169.99 -4.71 16.64 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 29 C 0.07 1.25 4.75 -3.07 -0.01 1.24 16 30 C 0.07 0.87 11.12 -16.84 -0.19 0.68 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.38 8.13 -51.93 -0.42 -0.04 16 33 H 0.08 0.38 8.13 -51.93 -0.42 -0.04 16 34 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.16 2.47 4.79 -52.49 -0.25 2.22 16 36 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 37 H 0.07 0.99 6.64 -51.93 -0.34 0.65 16 38 H 0.12 1.60 7.01 -52.49 -0.37 1.23 16 39 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.12 1.60 7.99 -52.49 -0.42 1.18 16 43 H 0.36 8.00 5.60 -40.82 -0.23 7.77 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.08 1.42 6.73 -51.93 -0.35 1.07 16 46 H 0.07 1.15 7.00 -51.92 -0.36 0.79 16 47 H 0.17 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 383.87 15.07 5.78 5.78 Total: -1.00 -33.79 383.87 -9.75 -43.55 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -6.49 Total: 12.78 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -3.98 Total: -8.06 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.44 Total: -59.54 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.71 Total: 16.64 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.79 -9.75 -43.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081106569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.028 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds