Wall clock time and date at job start Sat Apr 11 2020 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36452 * 124.85157 * 2 1 4 4 C 1.34484 * 108.86103 * 180.02562 * 3 2 1 5 5 C 1.46689 * 106.32898 * 359.97438 * 4 3 2 6 6 C 1.47269 * 126.93856 * 179.97438 * 5 4 3 7 7 O 1.21624 * 119.99544 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00013 * 0.03186 * 6 5 4 9 9 C 1.47423 * 125.64659 * 180.02562 * 8 6 5 10 10 C 1.55126 * 104.94104 * 203.96813 * 9 8 6 11 11 H 1.09006 * 110.93534 * 81.21994 * 10 9 8 12 12 C 1.50698 * 111.16144 * 205.12935 * 10 9 8 13 13 C 1.38241 * 119.99707 * 51.89863 * 12 10 9 14 14 C 1.38241 * 119.99859 * 179.80840 * 13 12 10 15 15 C 1.38237 * 119.99803 * 0.39572 * 14 13 12 16 16 C 1.38235 * 120.00017 * 359.85897 * 15 14 13 17 17 C 1.38231 * 120.00291 * 359.95285 * 16 15 14 18 18 C 1.55159 * 101.48752 * 323.22502 * 10 9 8 19 19 H 1.09001 * 110.71634 * 276.83041 * 18 10 9 20 20 N 1.46494 * 110.71736 * 153.73723 * 18 10 9 21 21 C 1.36945 * 119.99612 * 157.44241 * 20 18 10 22 22 H 1.07999 * 120.00077 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99637 * 179.97438 * 21 20 18 24 24 N 1.31624 * 119.99539 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00216 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46712 * 90.00052 * 25 23 21 27 27 H 1.48499 * 109.46916 * 209.99467 * 25 23 21 28 28 H 1.48492 * 109.46909 * 330.00070 * 25 23 21 29 29 C 1.47020 * 125.65071 * 359.97438 * 8 6 5 30 30 C 1.34663 * 124.85749 * 180.33248 * 2 1 3 31 31 H 1.08998 * 109.46940 * 89.97965 * 1 2 3 32 32 H 1.09004 * 109.46898 * 209.97336 * 1 2 3 33 33 H 1.08998 * 109.47703 * 329.97400 * 1 2 3 34 34 H 1.08002 * 125.56851 * 359.97438 * 3 2 1 35 35 H 1.07997 * 126.83453 * 179.97438 * 4 3 2 36 36 H 1.08994 * 110.36680 * 322.93059 * 9 8 6 37 37 H 1.08998 * 110.36531 * 85.15048 * 9 8 6 38 38 H 1.07997 * 120.00085 * 359.97438 * 13 12 10 39 39 H 1.07998 * 119.99618 * 180.23538 * 14 13 12 40 40 H 1.07999 * 119.99744 * 179.83282 * 15 14 13 41 41 H 1.07999 * 119.99966 * 179.97438 * 16 15 14 42 42 H 1.08002 * 120.00143 * 179.97438 * 17 16 15 43 43 H 0.96995 * 120.00290 * 337.71132 * 20 18 10 44 44 H 0.97005 * 119.99727 * 180.02562 * 24 23 21 45 45 H 1.09001 * 109.88519 * 59.55665 * 29 8 6 46 46 H 1.09008 * 110.00930 * 298.46760 * 29 8 6 47 47 H 1.08002 * 125.79389 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7493 -0.0006 5 6 3.5461 -0.7176 -0.0003 6 6 4.7284 -1.5956 -0.0013 7 8 4.5885 -2.8038 -0.0014 8 7 5.9653 -1.0604 -0.0019 9 6 7.2296 -1.8186 -0.0034 10 6 8.2775 -0.8502 0.6053 11 1 8.2212 -0.8496 1.6939 12 6 9.6693 -1.1916 0.1389 13 6 9.9311 -1.3302 -1.2114 14 6 11.2087 -1.6395 -1.6395 15 6 12.2225 -1.8182 -0.7169 16 6 11.9594 -1.6848 0.6336 17 6 10.6828 -1.3717 1.0615 18 6 7.8143 0.5116 0.0237 19 1 8.2058 0.6538 -0.9836 20 7 8.2233 1.6142 0.8971 21 6 8.3411 2.8812 0.3909 22 1 8.1328 3.0674 -0.6524 23 6 8.7281 3.9261 1.2186 24 7 8.8408 5.1439 0.7321 25 14 9.0876 3.6042 3.0233 26 1 10.5247 3.2690 3.1894 27 1 8.7677 4.8185 3.8159 28 1 8.2564 2.4693 3.4987 29 6 6.2773 0.3763 -0.0022 30 6 2.2345 -1.1050 -0.0064 31 1 -0.3633 0.0004 -1.0277 32 1 -0.3633 -0.8903 0.5134 33 1 -0.3634 0.8897 0.5142 34 1 1.8827 2.1373 -0.0004 35 1 4.3980 1.4019 -0.0011 36 1 7.1361 -2.7134 0.6120 37 1 7.5097 -2.0871 -1.0220 38 1 9.1383 -1.1942 -1.9319 39 1 11.4140 -1.7440 -2.6946 40 1 13.2199 -2.0625 -1.0512 41 1 12.7513 -1.8248 1.3545 42 1 10.4772 -1.2679 2.1167 43 1 8.4145 1.4462 1.8331 44 1 9.1116 5.8741 1.3105 45 1 5.8488 0.8490 0.8816 46 1 5.8789 0.8443 -0.9025 47 1 1.8767 -2.1240 -0.0127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081106569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:03 Heat of formation + Delta-G solvation = 54.097820 kcal Electronic energy + Delta-G solvation = -29135.125462 eV Core-core repulsion = 25283.703548 eV Total energy + Delta-G solvation = -3851.421914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.21044 -41.12647 -39.83232 -38.43231 -35.93692 -34.24645 -33.44130 -32.94955 -31.73153 -30.30727 -29.80209 -29.29830 -27.31494 -25.82520 -24.70781 -23.63168 -22.88218 -22.04845 -21.39961 -21.14897 -20.07266 -19.56992 -18.26145 -17.99367 -17.28182 -16.95364 -16.44579 -16.31791 -16.06640 -15.86241 -15.81697 -15.28134 -14.98922 -14.80095 -14.50924 -14.39493 -14.28918 -14.08305 -13.86431 -13.76833 -13.51666 -13.43885 -13.29937 -13.06785 -12.99174 -12.92927 -12.50547 -12.45534 -12.24540 -11.97652 -11.82725 -11.75742 -11.57047 -11.10640 -10.92873 -9.78920 -9.70573 -9.59820 -9.51237 -9.28108 -9.21687 -7.98750 -5.33233 0.50681 0.58504 0.75388 1.40739 1.42418 1.48931 1.51074 1.86945 2.20331 2.50732 2.54189 2.90170 3.29923 3.39579 3.68130 3.71392 3.94666 3.99881 4.02412 4.07559 4.12979 4.20876 4.26625 4.28395 4.33812 4.35128 4.46265 4.48431 4.61231 4.67452 4.69057 4.75084 4.79351 4.90045 4.94187 5.02039 5.09769 5.15462 5.20340 5.24676 5.37464 5.64658 5.68811 5.75873 5.76205 5.81772 6.08464 6.19665 6.24013 6.35979 6.55539 7.08412 7.22469 7.82117 8.01609 9.22133 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008592 B = 0.004113 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.058882 B = 6805.235621 C = 9349.914540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.441 5.441 3 C -0.012 4.012 4 C -0.197 4.197 5 C -0.267 4.267 6 C 0.600 3.400 7 O -0.596 6.596 8 N -0.609 5.609 9 C 0.124 3.876 10 C -0.063 4.063 11 H 0.089 0.911 12 C -0.070 4.070 13 C -0.126 4.126 14 C -0.124 4.124 15 C -0.130 4.130 16 C -0.126 4.126 17 C -0.128 4.128 18 C 0.184 3.816 19 H 0.070 0.930 20 N -0.734 5.734 21 C -0.225 4.225 22 H 0.064 0.936 23 C -0.052 4.052 24 N -0.979 5.979 25 Si 0.942 3.058 26 H -0.281 1.281 27 H -0.298 1.298 28 H -0.253 1.253 29 C 0.092 3.908 30 C 0.077 3.923 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.195 0.805 35 H 0.146 0.854 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.124 0.876 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.125 0.875 43 H 0.367 0.633 44 H 0.257 0.743 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.776 -14.454 -1.592 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.115 5.115 3 C -0.139 4.139 4 C -0.221 4.221 5 C -0.277 4.277 6 C 0.393 3.607 7 O -0.480 6.480 8 N -0.341 5.341 9 C 0.002 3.998 10 C -0.083 4.083 11 H 0.108 0.892 12 C -0.071 4.071 13 C -0.144 4.144 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.144 4.144 17 C -0.146 4.146 18 C 0.074 3.926 19 H 0.088 0.912 20 N -0.376 5.376 21 C -0.356 4.356 22 H 0.082 0.918 23 C -0.244 4.244 24 N -0.629 5.629 25 Si 0.770 3.230 26 H -0.207 1.207 27 H -0.225 1.225 28 H -0.178 1.178 29 C -0.034 4.034 30 C -0.061 4.061 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.212 0.788 35 H 0.164 0.836 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.142 0.858 39 H 0.159 0.841 40 H 0.162 0.838 41 H 0.158 0.842 42 H 0.143 0.857 43 H 0.200 0.800 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -10.304 -14.866 -1.739 18.171 hybrid contribution 0.445 0.593 1.061 1.294 sum -9.859 -14.272 -0.678 17.360 Atomic orbital electron populations 1.22468 0.73949 1.06389 1.05009 1.43941 1.08450 1.04898 1.54216 1.22220 0.89995 0.92624 1.09094 1.22743 0.97819 0.93137 1.08372 1.20318 0.92622 0.93863 1.20890 1.17427 0.81948 0.86474 0.74837 1.90687 1.86622 1.15862 1.54846 1.48219 1.05047 1.08227 1.72582 1.22252 0.81629 0.94535 1.01425 1.21552 0.91411 0.94627 1.00666 0.89225 1.19513 0.94076 0.99389 0.94113 1.21156 0.97919 1.00249 0.95058 1.21403 0.92657 0.99390 1.00775 1.21454 1.00079 1.00158 0.93127 1.21397 0.96608 0.99581 0.96803 1.21238 0.93479 1.00236 0.99689 1.21371 0.90710 0.85910 0.94656 0.91230 1.42582 1.81989 1.04416 1.08578 1.18978 1.37070 0.84330 0.95197 0.91818 1.25317 1.02272 0.94999 1.01784 1.69863 1.55971 1.00447 1.36653 0.85599 0.78460 0.77290 0.81605 1.20750 1.22524 1.17787 1.23129 0.98499 0.80113 1.01619 1.21928 0.89219 0.92840 1.02111 0.89233 0.88076 0.87745 0.78810 0.83630 0.90492 0.90370 0.85797 0.84146 0.83849 0.84228 0.85748 0.79968 0.93433 0.91345 0.91376 0.79476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 11.03 127.77 1.41 1.92 16 2 N -0.44 -8.35 3.09 -547.92 -1.69 -10.04 16 3 C -0.01 -0.28 11.34 83.11 0.94 0.67 16 4 C -0.20 -5.76 9.39 23.62 0.22 -5.54 16 5 C -0.27 -8.33 6.23 -19.04 -0.12 -8.44 16 6 C 0.60 21.45 7.84 86.62 0.68 22.13 16 7 O -0.60 -23.86 17.17 -4.11 -0.07 -23.93 16 8 N -0.61 -20.49 3.33 -815.42 -2.71 -23.20 16 9 C 0.12 3.78 6.32 86.93 0.55 4.33 16 10 C -0.06 -1.95 2.89 -10.07 -0.03 -1.98 16 11 H 0.09 2.78 7.83 -2.38 -0.02 2.76 16 12 C -0.07 -2.10 5.00 -19.86 -0.10 -2.20 16 13 C -0.13 -3.51 8.31 22.27 0.19 -3.32 16 14 C -0.12 -3.04 10.05 22.27 0.22 -2.81 16 15 C -0.13 -3.00 10.05 22.27 0.22 -2.78 16 16 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 17 C -0.13 -3.61 9.69 22.27 0.22 -3.39 16 18 C 0.18 6.71 3.01 46.18 0.14 6.85 16 19 H 0.07 2.67 7.19 -2.39 -0.02 2.65 16 20 N -0.73 -32.38 4.97 -317.34 -1.58 -33.96 16 21 C -0.23 -12.12 10.45 84.03 0.88 -11.24 16 22 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 23 C -0.05 -2.94 5.50 84.86 0.47 -2.47 16 24 N -0.98 -60.86 13.97 21.65 0.30 -60.55 16 25 Si 0.94 44.31 27.73 68.60 1.90 46.21 16 26 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 27 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 28 H -0.25 -10.79 6.52 99.48 0.65 -10.14 16 29 C 0.09 3.19 4.75 86.73 0.41 3.60 16 30 C 0.08 1.87 11.12 83.91 0.93 2.80 16 31 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.10 0.53 8.13 -2.38 -0.02 0.51 16 33 H 0.10 0.52 8.13 -2.39 -0.02 0.50 16 34 H 0.19 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.15 4.63 4.79 -2.91 -0.01 4.61 16 36 H 0.08 2.35 8.04 -2.39 -0.02 2.33 16 37 H 0.08 2.24 6.64 -2.39 -0.02 2.22 16 38 H 0.12 3.26 7.01 -2.91 -0.02 3.24 16 39 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 40 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 41 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 42 H 0.12 3.22 7.99 -2.91 -0.02 3.20 16 43 H 0.37 15.83 5.60 -92.71 -0.52 15.31 16 44 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 45 H 0.07 2.54 6.73 -2.39 -0.02 2.52 16 46 H 0.07 2.37 7.00 -2.38 -0.02 2.35 16 47 H 0.19 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -74.72 383.87 4.02 -70.69 By element: Atomic # 1 Polarization: 39.12 SS G_CDS: 0.41 Total: 39.53 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 7.46 Total: -4.75 kcal Atomic # 7 Polarization: -122.08 SS G_CDS: -5.68 Total: -127.76 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.07 Total: -23.93 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.90 Total: 46.21 kcal Total: -74.72 4.02 -70.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081106569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.793 kcal (2) G-P(sol) polarization free energy of solvation -74.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds