Wall clock time and date at job start Sat Apr 11 2020 05:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42907 * 113.99828 * 2 1 4 4 C 1.52999 * 109.46804 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47087 * 179.97438 * 4 3 2 6 6 C 1.34814 * 126.59242 * 124.99539 * 5 4 3 7 7 C 1.36596 * 106.83717 * 179.97438 * 6 5 4 8 8 C 1.47526 * 125.77031 * 180.02562 * 7 6 5 9 9 O 1.21597 * 119.99815 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00019 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99916 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.64140 * 34.29383 * 11 10 8 13 13 C 1.54333 * 110.71384 * 271.15370 * 11 10 8 14 14 N 1.47020 * 107.26563 * 219.44389 * 13 11 10 15 15 C 1.36944 * 125.64391 * 178.98144 * 14 13 11 16 16 H 1.07997 * 120.00192 * 349.93866 * 15 14 13 17 17 C 1.38814 * 119.99592 * 169.93825 * 15 14 13 18 18 N 1.31615 * 120.00569 * 350.42331 * 17 15 14 19 19 Si 1.86807 * 119.99549 * 170.41774 * 17 15 14 20 20 H 1.48506 * 109.46816 * 94.14388 * 19 17 15 21 21 H 1.48496 * 109.46871 * 214.14060 * 19 17 15 22 22 H 1.48497 * 109.47084 * 334.14476 * 19 17 15 23 23 C 1.47419 * 108.70815 * 358.94145 * 14 13 11 24 24 C 1.55126 * 104.94131 * 24.00354 * 23 14 13 25 25 H 1.08998 * 110.93356 * 81.21253 * 24 23 14 26 26 O 1.42902 * 111.16462 * 205.13228 * 24 23 14 27 27 C 1.42901 * 113.99645 * 262.17351 * 26 24 23 28 28 N 1.34401 * 108.46043 * 0.02562 * 7 6 5 29 29 N 1.28759 * 109.52150 * 359.74294 * 28 7 6 30 30 H 1.09005 * 109.46835 * 60.00263 * 1 2 3 31 31 H 1.09006 * 109.47303 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47684 * 300.00379 * 1 2 3 33 33 H 1.08995 * 109.47157 * 59.99926 * 3 2 1 34 34 H 1.09000 * 109.46669 * 299.99247 * 3 2 1 35 35 H 1.09009 * 109.47345 * 299.99770 * 4 3 2 36 36 H 1.09002 * 109.47438 * 59.99550 * 4 3 2 37 37 H 1.07998 * 126.58487 * 359.93529 * 6 5 4 38 38 H 0.96998 * 119.99992 * 359.97438 * 10 8 7 39 39 H 1.08997 * 109.88607 * 338.86016 * 13 11 10 40 40 H 1.09006 * 109.87927 * 99.87384 * 13 11 10 41 41 H 0.96997 * 120.00517 * 180.02562 * 18 17 15 42 42 H 1.08998 * 110.36818 * 142.96896 * 23 14 13 43 43 H 1.09008 * 110.36803 * 265.29178 * 23 14 13 44 44 H 1.09004 * 109.47115 * 299.99545 * 27 26 24 45 45 H 1.08997 * 109.47480 * 59.99671 * 27 26 24 46 46 H 1.09001 * 109.46715 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0249 3.0053 0.8868 7 6 5.3065 4.2869 0.5075 8 6 6.2390 5.2033 1.1909 9 8 6.8356 4.8343 2.1841 10 7 6.4296 6.4496 0.7145 11 6 7.3561 7.3594 1.3928 12 1 8.1990 6.8086 1.8103 13 6 6.6277 8.1595 2.4934 14 7 7.1549 9.5315 2.4568 15 6 6.7531 10.5626 3.2634 16 1 5.8802 10.4500 3.8894 17 6 7.4677 11.7526 3.2765 18 7 8.6304 11.8288 2.6643 19 14 6.7791 13.2458 4.1629 20 1 7.3221 13.2954 5.5442 21 1 7.1699 14.4785 3.4329 22 1 5.2982 13.1504 4.2162 23 6 8.1883 9.6131 1.4086 24 6 7.8492 8.4649 0.4223 25 1 7.0574 8.7630 -0.2650 26 8 9.0110 8.0383 -0.2920 27 6 9.1360 8.6127 -1.5945 28 7 4.5904 4.5720 -0.5935 29 7 3.8857 3.5469 -0.9258 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8463 -0.8901 35 1 3.8567 0.6439 0.8909 36 1 3.8574 0.6435 -0.8891 37 1 5.4383 2.4794 1.7347 38 1 5.9540 6.7438 -0.0780 39 1 5.5556 8.1690 2.2969 40 1 6.8220 7.7111 3.4677 41 1 9.1299 12.6602 2.6738 42 1 8.1393 10.5768 0.9017 43 1 9.1781 9.4598 1.8389 44 1 8.2697 8.3393 -2.1969 45 1 9.1913 9.6980 -1.5092 46 1 10.0426 8.2394 -2.0707 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081649570.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:06 Heat of formation + Delta-G solvation = -15.790546 kcal Electronic energy + Delta-G solvation = -29110.774412 eV Core-core repulsion = 24845.472648 eV Total energy + Delta-G solvation = -4265.301764 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.31110 -40.93884 -39.50203 -39.05249 -37.51566 -36.03115 -35.56648 -33.69796 -32.24957 -31.12934 -30.38696 -28.87482 -27.51275 -27.39553 -26.23494 -25.11325 -24.52148 -22.83569 -22.44419 -21.96515 -21.25717 -19.46195 -18.84881 -17.98883 -17.84635 -17.52001 -17.19222 -16.89868 -16.77552 -16.53008 -16.09728 -15.91030 -15.77657 -15.58842 -15.46444 -15.37973 -14.97909 -14.55785 -14.53522 -13.93124 -13.81069 -13.50454 -13.24024 -13.10408 -12.99460 -12.80035 -12.72768 -12.61057 -12.42654 -12.35175 -12.16816 -12.06008 -11.87470 -11.66397 -11.43210 -11.33214 -10.79405 -10.75526 -10.60480 -10.43752 -10.08686 -8.93074 -7.89305 -5.27418 0.07660 0.56343 0.89256 1.47686 1.49047 1.59092 1.97082 2.18893 2.46083 2.66220 2.73184 3.10667 3.30488 3.43618 3.57028 3.69582 3.77569 3.86046 3.92671 3.96305 4.04197 4.09114 4.19223 4.35662 4.44116 4.45672 4.47286 4.54229 4.60247 4.60331 4.64714 4.77117 4.84625 4.87072 4.87589 4.94105 5.28792 5.33351 5.37730 5.44581 5.61965 5.98722 6.12600 6.28645 6.36811 6.83922 7.02873 7.08879 7.68687 8.34002 9.21809 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016089 B = 0.002195 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.851497 B =12753.190573 C =13818.014983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.052 3.948 4 C 0.121 3.879 5 N -0.349 5.349 6 C 0.122 3.878 7 C -0.120 4.120 8 C 0.607 3.393 9 O -0.565 6.565 10 N -0.693 5.693 11 C 0.155 3.845 12 H 0.089 0.911 13 C 0.132 3.868 14 N -0.617 5.617 15 C -0.247 4.247 16 H 0.082 0.918 17 C -0.061 4.061 18 N -0.946 5.946 19 Si 0.982 3.018 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.267 1.267 23 C 0.172 3.828 24 C 0.075 3.925 25 H 0.089 0.911 26 O -0.393 6.393 27 C 0.026 3.974 28 N -0.219 5.219 29 N -0.081 5.081 30 H 0.049 0.951 31 H 0.105 0.895 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.147 0.853 36 H 0.121 0.879 37 H 0.241 0.759 38 H 0.415 0.585 39 H 0.041 0.959 40 H 0.022 0.978 41 H 0.251 0.749 42 H 0.048 0.952 43 H 0.003 0.997 44 H 0.058 0.942 45 H 0.037 0.963 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.029 -24.353 -9.728 29.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.026 4.026 4 C 0.001 3.999 5 N -0.135 5.135 6 C -0.036 4.036 7 C -0.259 4.259 8 C 0.392 3.608 9 O -0.443 6.443 10 N -0.343 5.343 11 C 0.049 3.951 12 H 0.107 0.893 13 C 0.005 3.995 14 N -0.345 5.345 15 C -0.376 4.376 16 H 0.100 0.900 17 C -0.254 4.254 18 N -0.594 5.594 19 Si 0.809 3.191 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.192 1.192 23 C 0.046 3.954 24 C 0.015 3.985 25 H 0.107 0.893 26 O -0.311 6.311 27 C -0.070 4.070 28 N -0.093 5.093 29 N -0.062 5.062 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.165 0.835 36 H 0.140 0.860 37 H 0.257 0.743 38 H 0.251 0.749 39 H 0.059 0.941 40 H 0.040 0.960 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.021 0.979 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.127 -24.383 -10.183 29.505 hybrid contribution -0.035 1.345 0.960 1.653 sum -13.162 -23.038 -9.223 28.090 Atomic orbital electron populations 1.22980 0.78645 1.04352 1.00963 1.87750 1.21955 1.26550 1.95690 1.22566 0.92331 0.85687 1.02007 1.22054 0.92673 0.76277 1.08880 1.50461 1.29927 1.14052 1.19058 1.23864 0.90494 0.93624 0.95569 1.21282 1.08037 0.96572 1.00045 1.17010 0.80110 0.81013 0.82658 1.90807 1.50065 1.76742 1.26695 1.45602 1.44854 1.12434 1.31397 1.21720 0.91545 0.89438 0.92432 0.89271 1.21685 0.96732 0.84899 0.96170 1.44537 1.44435 1.05779 1.39768 1.19401 1.07893 0.91764 1.18519 0.89985 1.25720 0.96452 1.01480 1.01779 1.70146 1.13838 1.26370 1.49068 0.85033 0.78167 0.78445 0.77435 1.21386 1.21676 1.19199 1.21509 0.90559 0.95314 0.87998 1.23632 0.88041 0.93564 0.93279 0.89306 1.87846 1.44123 1.68854 1.30293 1.22996 1.03226 0.97918 0.82818 1.74627 1.04281 1.19766 1.10610 1.81917 1.20604 0.91052 1.12623 0.93251 0.87687 0.93199 0.92340 0.92208 0.83513 0.86049 0.74284 0.74853 0.94143 0.96029 0.94022 0.93356 0.97900 0.92317 0.94425 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.40 -4.30 10.70 -148.98 -1.59 -5.89 16 3 C 0.05 0.50 6.15 71.98 0.44 0.94 16 4 C 0.12 0.87 6.91 86.38 0.60 1.47 16 5 N -0.35 -5.17 3.69 -347.09 -1.28 -6.45 16 6 C 0.12 2.01 11.27 83.85 0.95 2.96 16 7 C -0.12 -2.97 6.99 40.82 0.29 -2.68 16 8 C 0.61 18.87 7.82 86.69 0.68 19.54 16 9 O -0.57 -20.57 16.55 -4.02 -0.07 -20.64 16 10 N -0.69 -21.98 5.11 -440.06 -2.25 -24.23 16 11 C 0.15 5.97 3.00 46.18 0.14 6.11 16 12 H 0.09 3.78 7.62 -2.39 -0.02 3.76 16 13 C 0.13 5.88 7.00 86.73 0.61 6.48 16 14 N -0.62 -32.81 3.40 -691.54 -2.35 -35.15 16 15 C -0.25 -14.10 10.24 84.03 0.86 -13.24 16 16 H 0.08 4.49 7.85 -2.91 -0.02 4.47 16 17 C -0.06 -3.47 5.40 84.86 0.46 -3.01 16 18 N -0.95 -57.16 10.68 21.65 0.23 -56.93 16 19 Si 0.98 45.82 29.56 68.60 2.03 47.85 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 C 0.17 8.74 5.17 86.93 0.45 9.18 16 24 C 0.07 2.90 3.17 32.06 0.10 3.01 16 25 H 0.09 3.11 7.69 -2.39 -0.02 3.09 16 26 O -0.39 -14.40 10.52 -148.98 -1.57 -15.96 16 27 C 0.03 0.72 10.85 113.37 1.23 1.95 16 28 N -0.22 -5.62 12.04 -49.99 -0.60 -6.22 16 29 N -0.08 -1.80 13.65 37.02 0.51 -1.29 16 30 H 0.05 0.30 8.14 -2.38 -0.02 0.28 16 31 H 0.10 0.41 8.14 -2.38 -0.02 0.40 16 32 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.15 0.21 8.08 -2.38 -0.02 0.19 16 36 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.24 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.41 11.65 8.22 -92.71 -0.76 10.89 16 39 H 0.04 1.73 8.03 -2.39 -0.02 1.71 16 40 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 42 H 0.05 2.67 6.94 -2.39 -0.02 2.65 16 43 H 0.00 0.17 8.07 -2.38 -0.02 0.15 16 44 H 0.06 1.35 8.12 -2.38 -0.02 1.33 16 45 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -77.07 392.47 1.33 -75.73 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.24 Total: 15.05 kcal Atomic # 6 Polarization: 26.11 SS G_CDS: 8.04 Total: 34.15 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -5.74 Total: -130.29 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -3.23 Total: -42.49 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -77.07 1.33 -75.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081649570.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.944 kcal (2) G-P(sol) polarization free energy of solvation -77.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds