Wall clock time and date at job start Sat Apr 11 2020 05:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35472 * 124.78545 * 2 1 4 4 C 1.36369 * 109.76630 * 179.97438 * 3 2 1 5 5 C 1.46913 * 126.76731 * 179.97438 * 4 3 2 6 6 O 1.21677 * 119.99779 * 175.28306 * 5 4 3 7 7 N 1.34768 * 120.00108 * 355.28882 * 5 4 3 8 8 C 1.47291 * 136.54740 * 5.12533 * 7 5 4 9 9 C 1.54357 * 87.50764 * 151.47637 * 8 7 5 10 10 H 1.09000 * 115.78558 * 141.80614 * 9 8 7 11 11 C 1.53065 * 111.57473 * 274.17317 * 9 8 7 12 12 C 1.53141 * 109.21384 * 142.37587 * 11 9 8 13 13 N 1.46538 * 108.25390 * 301.59576 * 12 11 9 14 14 C 1.36941 * 119.73712 * 236.44131 * 13 12 11 15 15 H 1.08006 * 119.99547 * 34.72847 * 14 13 12 16 16 C 1.38806 * 120.00021 * 214.73851 * 14 13 12 17 17 N 1.31614 * 120.00158 * 355.34496 * 16 14 13 18 18 Si 1.86802 * 120.00020 * 175.34720 * 16 14 13 19 19 H 1.48504 * 109.47177 * 59.99940 * 18 16 14 20 20 H 1.48498 * 109.47208 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47278 * 299.99869 * 18 16 14 22 22 C 1.45701 * 120.52739 * 56.41362 * 13 12 11 23 23 C 1.46477 * 136.54523 * 185.50142 * 7 5 4 24 24 H 1.09001 * 111.43610 * 97.06189 * 23 7 5 25 25 C 1.47449 * 106.46391 * 359.97438 * 4 3 2 26 26 C 1.39274 * 134.00521 * 180.02562 * 25 4 3 27 27 C 1.37748 * 119.67038 * 179.97438 * 26 25 4 28 28 C 1.38760 * 120.30225 * 0.02562 * 27 26 25 29 29 C 1.37767 * 120.62981 * 359.97378 * 28 27 26 30 30 C 1.37959 * 124.78483 * 180.26324 * 2 1 3 31 31 H 1.09004 * 109.47343 * 89.97690 * 1 2 3 32 32 H 1.08995 * 109.47654 * 209.98040 * 1 2 3 33 33 H 1.09011 * 109.47047 * 329.97965 * 1 2 3 34 34 H 1.08003 * 125.11408 * 0.02562 * 3 2 1 35 35 H 1.09003 * 113.53023 * 266.10949 * 8 7 5 36 36 H 1.09003 * 113.52346 * 36.73624 * 8 7 5 37 37 H 1.08999 * 109.51376 * 22.45297 * 11 9 8 38 38 H 1.08997 * 109.55697 * 262.32391 * 11 9 8 39 39 H 1.08998 * 109.71094 * 181.89748 * 12 11 9 40 40 H 1.09001 * 109.74009 * 61.30237 * 12 11 9 41 41 H 0.96998 * 120.00218 * 180.02562 * 17 16 14 42 42 H 1.08994 * 108.78939 * 199.11054 * 22 13 12 43 43 H 1.09005 * 108.69512 * 80.83423 * 22 13 12 44 44 H 1.08004 * 120.16211 * 359.97438 * 26 25 4 45 45 H 1.07997 * 119.85142 * 179.97438 * 27 26 25 46 46 H 1.07996 * 119.68241 * 180.02562 * 28 27 26 47 47 H 1.08002 * 120.02705 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.1126 0.0000 4 6 3.5550 0.7592 0.0006 5 6 4.7093 1.6680 0.0002 6 8 5.8369 1.2192 0.0875 7 7 4.5193 2.9987 -0.0966 8 6 3.3663 3.9149 -0.1248 9 6 4.2881 4.9861 0.4960 10 1 4.1470 6.0030 0.1298 11 6 4.3283 4.8780 2.0223 12 6 5.7491 5.1739 2.5112 13 7 6.6606 4.2154 1.8803 14 6 7.4592 3.4227 2.6607 15 1 7.0979 3.0634 3.6130 16 6 8.7331 3.0812 2.2280 17 7 9.1397 3.4420 1.0294 18 14 9.8704 2.1095 3.3468 19 1 9.2426 0.8053 3.6787 20 1 11.1631 1.8742 2.6549 21 1 10.1094 2.8759 4.5960 22 6 6.7234 4.0987 0.4294 23 6 5.3657 4.1869 -0.2279 24 1 5.4500 4.5031 -1.2676 25 6 3.5922 -0.7148 0.0016 26 6 4.6180 -1.6568 0.0029 27 6 4.3107 -2.9995 0.0042 28 6 2.9867 -3.4148 0.0035 29 6 1.9622 -2.4937 0.0022 30 6 2.2521 -1.1330 -0.0052 31 1 -0.3634 0.0004 -1.0277 32 1 -0.3634 -0.8901 0.5135 33 1 -0.3634 0.8899 0.5142 34 1 1.8667 2.1269 0.0004 35 1 3.0304 4.1608 -1.1322 36 1 2.5506 3.6080 0.5299 37 1 4.0420 3.8704 2.3236 38 1 3.6361 5.5987 2.4575 39 1 5.7949 5.0662 3.5949 40 1 6.0312 6.1887 2.2306 41 1 10.0298 3.2030 0.7268 42 1 7.1758 3.1407 0.1735 43 1 7.3538 4.8988 0.0414 44 1 5.6493 -1.3360 0.0030 45 1 5.1039 -3.7325 0.0048 46 1 2.7572 -4.4701 0.0049 47 1 0.9352 -2.8277 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084494886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:10 Heat of formation + Delta-G solvation = 109.936208 kcal Electronic energy + Delta-G solvation = -30272.207784 eV Core-core repulsion = 26423.207204 eV Total energy + Delta-G solvation = -3849.000580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.46536 -40.26097 -37.21243 -37.05826 -35.07343 -32.89889 -32.02620 -30.28358 -30.05719 -29.64936 -28.31537 -26.92046 -26.42975 -23.85550 -23.09896 -22.80772 -21.70851 -21.25641 -20.65612 -19.36221 -17.82586 -17.23465 -16.58971 -16.19495 -15.74889 -15.58809 -15.46015 -15.18665 -14.88963 -14.14747 -13.89903 -13.85471 -13.62035 -13.39295 -13.27615 -13.00785 -12.83350 -12.80725 -12.56380 -12.45252 -12.19280 -11.80572 -11.56322 -11.37581 -11.27425 -10.91170 -10.85030 -10.68600 -10.52555 -10.38485 -10.13561 -9.82572 -9.70204 -9.51659 -9.45888 -8.79275 -8.22395 -8.18134 -7.98460 -7.57885 -6.35141 -5.57203 -3.07786 1.09349 1.62729 2.24123 2.61982 3.43640 3.53522 3.57517 3.59305 3.80949 4.20697 4.46737 4.55770 4.66541 4.70679 4.75368 4.86237 4.91975 5.08976 5.17439 5.19522 5.27220 5.42613 5.50892 5.57997 5.59143 5.63305 5.67503 5.71558 5.77644 5.83550 5.97872 6.14895 6.22790 6.30600 6.44611 6.47284 6.48083 6.62908 6.64892 6.69411 6.76880 6.85409 6.89600 7.09352 7.13598 7.20394 7.64929 7.96241 8.07773 8.51117 8.75077 9.03554 9.48652 10.08673 10.60675 11.50137 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011286 B = 0.004366 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.349480 B = 6411.847956 C = 8195.301623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.479 5.479 3 C 0.088 3.912 4 C -0.202 4.202 5 C 0.610 3.390 6 O -0.509 6.509 7 N -0.631 5.631 8 C 0.091 3.909 9 C -0.113 4.113 10 H 0.090 0.910 11 C -0.116 4.116 12 C 0.149 3.851 13 N -0.584 5.584 14 C -0.252 4.252 15 H 0.057 0.943 16 C 0.019 3.981 17 N -0.902 5.902 18 Si 0.899 3.101 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.284 1.284 22 C 0.168 3.832 23 C 0.119 3.881 24 H 0.070 0.930 25 C -0.064 4.064 26 C -0.055 4.055 27 C -0.148 4.148 28 C -0.101 4.101 29 C -0.133 4.133 30 C 0.086 3.914 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.176 0.824 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.018 0.982 41 H 0.252 0.748 42 H 0.108 0.892 43 H 0.027 0.973 44 H 0.136 0.864 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.172 -4.541 -4.865 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.162 5.162 3 C -0.042 4.042 4 C -0.213 4.213 5 C 0.400 3.600 6 O -0.384 6.384 7 N -0.368 5.368 8 C -0.033 4.033 9 C -0.132 4.132 10 H 0.108 0.892 11 C -0.155 4.155 12 C 0.022 3.978 13 N -0.306 5.306 14 C -0.382 4.382 15 H 0.074 0.926 16 C -0.180 4.180 17 N -0.546 5.546 18 Si 0.729 3.271 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.211 1.211 22 C 0.042 3.958 23 C 0.015 3.985 24 H 0.087 0.913 25 C -0.068 4.068 26 C -0.073 4.073 27 C -0.167 4.167 28 C -0.120 4.120 29 C -0.154 4.154 30 C -0.017 4.017 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.193 0.807 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.062 0.938 42 H 0.126 0.874 43 H 0.044 0.956 44 H 0.154 0.846 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -20.666 -5.079 -4.893 21.836 hybrid contribution 0.254 -0.477 0.392 0.668 sum -20.411 -5.555 -4.501 21.627 Atomic orbital electron populations 1.21988 0.77025 1.04374 1.03091 1.43545 1.06056 1.04377 1.62181 1.22350 0.90082 0.91305 1.00423 1.20282 0.92258 0.92407 1.16327 1.16534 0.87569 0.78959 0.76937 1.90877 1.23948 1.74822 1.48722 1.49251 1.10374 1.03638 1.73493 1.23435 0.91197 0.88925 0.99740 1.22808 0.96371 0.96973 0.97075 0.89177 1.21838 1.00041 1.01015 0.92623 1.20725 0.88239 0.92373 0.96415 1.43392 1.45313 1.40786 1.01149 1.18952 0.92910 1.24827 1.01520 0.92552 1.25205 0.96798 0.99379 0.96635 1.69944 1.18474 1.49156 1.16986 0.86420 0.80382 0.79985 0.80279 1.20971 1.21666 1.21105 1.20289 0.88402 1.03820 0.83283 1.22684 0.96501 0.80892 0.98416 0.91260 1.18791 0.92003 0.91691 1.04345 1.20823 0.99475 0.91527 0.95525 1.20962 0.96316 0.95462 1.03957 1.20774 0.92346 0.98612 1.00253 1.19899 0.99297 0.88900 1.07303 1.18248 0.89808 0.88182 1.05505 0.91114 0.89971 0.89730 0.80714 0.90619 0.91484 0.92177 0.92909 0.92713 0.96377 0.93764 0.87435 0.95564 0.84588 0.85854 0.85893 0.86591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 10.98 59.85 0.66 1.16 16 2 N -0.48 -5.67 3.14 -121.59 -0.38 -6.05 16 3 C 0.09 1.17 10.51 -16.62 -0.17 1.00 16 4 C -0.20 -3.62 6.27 -103.31 -0.65 -4.27 16 5 C 0.61 13.15 8.00 -12.75 -0.10 13.05 16 6 O -0.51 -13.54 15.35 5.21 0.08 -13.46 16 7 N -0.63 -11.88 3.33 -188.98 -0.63 -12.51 16 8 C 0.09 1.20 6.45 -11.40 -0.07 1.12 16 9 C -0.11 -1.73 4.57 -90.16 -0.41 -2.15 16 10 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 11 C -0.12 -1.96 5.71 -26.62 -0.15 -2.11 16 12 C 0.15 3.16 6.46 -3.95 -0.03 3.14 16 13 N -0.58 -15.32 3.02 -174.90 -0.53 -15.85 16 14 C -0.25 -7.42 9.42 -15.06 -0.14 -7.56 16 15 H 0.06 1.66 7.83 -52.48 -0.41 1.25 16 16 C 0.02 0.56 5.30 -17.43 -0.09 0.47 16 17 N -0.90 -27.77 10.65 55.49 0.59 -27.18 16 18 Si 0.90 23.52 29.56 -169.99 -5.02 18.50 16 19 H -0.28 -7.48 7.11 56.52 0.40 -7.08 16 20 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 21 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 22 C 0.17 4.28 4.52 -5.43 -0.02 4.26 16 23 C 0.12 2.33 4.03 -77.68 -0.31 2.02 16 24 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 25 C -0.06 -1.12 6.27 -104.95 -0.66 -1.78 16 26 C -0.06 -0.95 9.86 -39.38 -0.39 -1.34 16 27 C -0.15 -2.04 10.03 -39.57 -0.40 -2.43 16 28 C -0.10 -1.18 10.01 -39.56 -0.40 -1.58 16 29 C -0.13 -1.59 9.91 -39.43 -0.39 -1.98 16 30 C 0.09 1.23 6.79 -83.97 -0.57 0.66 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.45 8.03 -51.93 -0.42 0.03 16 33 H 0.08 0.40 8.13 -51.92 -0.42 -0.02 16 34 H 0.18 1.79 5.12 -52.48 -0.27 1.52 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.75 6.22 -51.93 -0.32 0.43 16 37 H 0.06 1.14 7.69 -51.93 -0.40 0.74 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 1.16 7.90 -51.93 -0.41 0.75 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.25 7.57 8.31 -40.82 -0.34 7.24 16 42 H 0.11 3.24 5.07 -51.93 -0.26 2.98 16 43 H 0.03 0.72 7.95 -51.93 -0.41 0.31 16 44 H 0.14 2.61 7.46 -52.48 -0.39 2.22 16 45 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 46 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 47 H 0.12 1.02 8.01 -52.49 -0.42 0.60 16 LS Contribution 374.16 15.07 5.64 5.64 Total: -1.00 -37.31 374.16 -11.21 -48.53 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.66 Total: 0.71 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -4.30 Total: 1.68 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.95 Total: -61.59 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.08 Total: -13.46 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.02 Total: 18.50 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.31 -11.21 -48.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084494886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.462 kcal (2) G-P(sol) polarization free energy of solvation -37.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds