Wall clock time and date at job start Sat Apr 11 2020 05:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35472 * 124.78545 * 2 1 4 4 C 1.36369 * 109.76630 * 179.97438 * 3 2 1 5 5 C 1.46913 * 126.76731 * 179.97438 * 4 3 2 6 6 O 1.21677 * 119.99779 * 175.28306 * 5 4 3 7 7 N 1.34768 * 120.00108 * 355.28882 * 5 4 3 8 8 C 1.47291 * 136.54740 * 5.12533 * 7 5 4 9 9 C 1.54357 * 87.50764 * 151.47637 * 8 7 5 10 10 H 1.09000 * 115.78558 * 141.80614 * 9 8 7 11 11 C 1.53065 * 111.57473 * 274.17317 * 9 8 7 12 12 C 1.53141 * 109.21384 * 142.37587 * 11 9 8 13 13 N 1.46538 * 108.25390 * 301.59576 * 12 11 9 14 14 C 1.36941 * 119.73712 * 236.44131 * 13 12 11 15 15 H 1.08006 * 119.99547 * 34.72847 * 14 13 12 16 16 C 1.38806 * 120.00021 * 214.73851 * 14 13 12 17 17 N 1.31614 * 120.00158 * 355.34496 * 16 14 13 18 18 Si 1.86802 * 120.00020 * 175.34720 * 16 14 13 19 19 H 1.48504 * 109.47177 * 59.99940 * 18 16 14 20 20 H 1.48498 * 109.47208 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47278 * 299.99869 * 18 16 14 22 22 C 1.45701 * 120.52739 * 56.41362 * 13 12 11 23 23 C 1.46477 * 136.54523 * 185.50142 * 7 5 4 24 24 H 1.09001 * 111.43610 * 97.06189 * 23 7 5 25 25 C 1.47449 * 106.46391 * 359.97438 * 4 3 2 26 26 C 1.39274 * 134.00521 * 180.02562 * 25 4 3 27 27 C 1.37748 * 119.67038 * 179.97438 * 26 25 4 28 28 C 1.38760 * 120.30225 * 0.02562 * 27 26 25 29 29 C 1.37767 * 120.62981 * 359.97378 * 28 27 26 30 30 C 1.37959 * 124.78483 * 180.26324 * 2 1 3 31 31 H 1.09004 * 109.47343 * 89.97690 * 1 2 3 32 32 H 1.08995 * 109.47654 * 209.98040 * 1 2 3 33 33 H 1.09011 * 109.47047 * 329.97965 * 1 2 3 34 34 H 1.08003 * 125.11408 * 0.02562 * 3 2 1 35 35 H 1.09003 * 113.53023 * 266.10949 * 8 7 5 36 36 H 1.09003 * 113.52346 * 36.73624 * 8 7 5 37 37 H 1.08999 * 109.51376 * 22.45297 * 11 9 8 38 38 H 1.08997 * 109.55697 * 262.32391 * 11 9 8 39 39 H 1.08998 * 109.71094 * 181.89748 * 12 11 9 40 40 H 1.09001 * 109.74009 * 61.30237 * 12 11 9 41 41 H 0.96998 * 120.00218 * 180.02562 * 17 16 14 42 42 H 1.08994 * 108.78939 * 199.11054 * 22 13 12 43 43 H 1.09005 * 108.69512 * 80.83423 * 22 13 12 44 44 H 1.08004 * 120.16211 * 359.97438 * 26 25 4 45 45 H 1.07997 * 119.85142 * 179.97438 * 27 26 25 46 46 H 1.07996 * 119.68241 * 180.02562 * 28 27 26 47 47 H 1.08002 * 120.02705 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.1126 0.0000 4 6 3.5550 0.7592 0.0006 5 6 4.7093 1.6680 0.0002 6 8 5.8369 1.2192 0.0875 7 7 4.5193 2.9987 -0.0966 8 6 3.3663 3.9149 -0.1248 9 6 4.2881 4.9861 0.4960 10 1 4.1470 6.0030 0.1298 11 6 4.3283 4.8780 2.0223 12 6 5.7491 5.1739 2.5112 13 7 6.6606 4.2154 1.8803 14 6 7.4592 3.4227 2.6607 15 1 7.0979 3.0634 3.6130 16 6 8.7331 3.0812 2.2280 17 7 9.1397 3.4420 1.0294 18 14 9.8704 2.1095 3.3468 19 1 9.2426 0.8053 3.6787 20 1 11.1631 1.8742 2.6549 21 1 10.1094 2.8759 4.5960 22 6 6.7234 4.0987 0.4294 23 6 5.3657 4.1869 -0.2279 24 1 5.4500 4.5031 -1.2676 25 6 3.5922 -0.7148 0.0016 26 6 4.6180 -1.6568 0.0029 27 6 4.3107 -2.9995 0.0042 28 6 2.9867 -3.4148 0.0035 29 6 1.9622 -2.4937 0.0022 30 6 2.2521 -1.1330 -0.0052 31 1 -0.3634 0.0004 -1.0277 32 1 -0.3634 -0.8901 0.5135 33 1 -0.3634 0.8899 0.5142 34 1 1.8667 2.1269 0.0004 35 1 3.0304 4.1608 -1.1322 36 1 2.5506 3.6080 0.5299 37 1 4.0420 3.8704 2.3236 38 1 3.6361 5.5987 2.4575 39 1 5.7949 5.0662 3.5949 40 1 6.0312 6.1887 2.2306 41 1 10.0298 3.2030 0.7268 42 1 7.1758 3.1407 0.1735 43 1 7.3538 4.8988 0.0414 44 1 5.6493 -1.3360 0.0030 45 1 5.1039 -3.7325 0.0048 46 1 2.7572 -4.4701 0.0049 47 1 0.9352 -2.8277 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084494886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:09 Heat of formation + Delta-G solvation = 84.610568 kcal Electronic energy + Delta-G solvation = -30273.305986 eV Core-core repulsion = 26423.207204 eV Total energy + Delta-G solvation = -3850.098782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.53615 -41.64593 -38.81804 -38.07168 -36.97672 -34.06631 -33.79349 -31.89730 -31.26025 -31.03982 -29.55658 -28.61151 -27.34501 -25.71233 -24.59684 -23.94538 -22.98950 -22.60776 -21.93005 -20.69375 -19.49371 -18.67291 -17.77353 -17.65159 -17.28816 -16.79672 -16.60250 -16.39979 -16.19157 -16.00694 -15.51232 -14.98226 -14.94581 -14.87296 -14.70756 -14.52264 -14.14831 -13.99876 -13.70910 -13.65393 -13.39345 -13.26535 -13.02396 -12.74443 -12.70561 -12.58432 -12.32288 -12.25395 -12.19959 -11.96454 -11.93489 -11.73367 -11.43806 -11.03608 -10.63294 -10.62524 -10.31014 -9.46274 -9.26396 -8.64842 -8.50000 -7.83749 -5.37301 0.00897 0.55732 1.07397 1.34195 1.40268 1.44545 1.73760 2.09584 2.47747 2.53337 2.96896 3.30749 3.44729 3.64436 3.66163 3.71547 3.79031 3.96130 4.08259 4.17442 4.23036 4.33308 4.45906 4.49613 4.51756 4.53239 4.57989 4.63783 4.72745 4.74067 4.77296 4.77675 4.81477 4.93089 5.00083 5.08186 5.11059 5.18571 5.35052 5.43704 5.49370 5.56231 5.59758 5.68568 5.70642 5.79424 5.92054 6.13089 6.27572 6.47437 7.08665 7.23917 7.53054 7.99418 8.40036 9.18915 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011286 B = 0.004366 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.349480 B = 6411.847956 C = 8195.301623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.467 5.467 3 C 0.133 3.867 4 C -0.266 4.266 5 C 0.598 3.402 6 O -0.592 6.592 7 N -0.639 5.639 8 C 0.105 3.895 9 C -0.099 4.099 10 H 0.134 0.866 11 C -0.104 4.104 12 C 0.140 3.860 13 N -0.603 5.603 14 C -0.261 4.261 15 H 0.048 0.952 16 C -0.040 4.040 17 N -0.929 5.929 18 Si 0.958 3.042 19 H -0.291 1.291 20 H -0.290 1.290 21 H -0.264 1.264 22 C 0.183 3.817 23 C 0.101 3.899 24 H 0.088 0.912 25 C -0.101 4.101 26 C -0.107 4.107 27 C -0.142 4.142 28 C -0.102 4.102 29 C -0.115 4.115 30 C 0.076 3.924 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.215 0.785 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.037 0.963 38 H 0.103 0.897 39 H 0.047 0.953 40 H 0.029 0.971 41 H 0.244 0.756 42 H 0.049 0.951 43 H -0.009 1.009 44 H 0.087 0.913 45 H 0.136 0.864 46 H 0.165 0.835 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.776 -4.126 -4.745 28.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.147 5.147 3 C 0.000 4.000 4 C -0.276 4.276 5 C 0.391 3.609 6 O -0.473 6.473 7 N -0.374 5.374 8 C -0.016 4.016 9 C -0.117 4.117 10 H 0.152 0.848 11 C -0.143 4.143 12 C 0.015 3.985 13 N -0.326 5.326 14 C -0.392 4.392 15 H 0.066 0.934 16 C -0.236 4.236 17 N -0.575 5.575 18 Si 0.786 3.214 19 H -0.218 1.218 20 H -0.215 1.215 21 H -0.190 1.190 22 C 0.056 3.944 23 C -0.004 4.004 24 H 0.105 0.895 25 C -0.105 4.105 26 C -0.126 4.126 27 C -0.161 4.161 28 C -0.121 4.121 29 C -0.135 4.135 30 C -0.028 4.028 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.130 0.870 34 H 0.232 0.768 35 H 0.137 0.863 36 H 0.117 0.883 37 H 0.055 0.945 38 H 0.121 0.879 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.009 0.991 44 H 0.105 0.895 45 H 0.154 0.846 46 H 0.182 0.818 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -27.381 -4.621 -4.760 28.173 hybrid contribution 2.207 -0.625 0.364 2.322 sum -25.174 -5.246 -4.396 26.088 Atomic orbital electron populations 1.22489 0.73023 1.06700 1.05193 1.43920 1.08116 1.02969 1.59685 1.22707 0.88312 0.93123 0.95906 1.20086 0.93090 0.92244 1.22229 1.17249 0.87760 0.80174 0.75745 1.90824 1.27244 1.76461 1.52757 1.49385 1.12680 1.02978 1.72366 1.23706 0.89887 0.85400 1.02613 1.22840 0.94076 0.99338 0.95494 0.84828 1.21716 0.97415 1.01063 0.94136 1.20972 0.90021 0.91552 0.95982 1.43629 1.46035 1.41634 1.01330 1.19200 0.93523 1.24996 1.01455 0.93399 1.25949 0.98493 1.01169 0.97970 1.70168 1.18135 1.50785 1.18363 0.85502 0.78320 0.78358 0.79223 1.21808 1.21549 1.18970 1.19818 0.91674 0.99366 0.83500 1.22724 0.94624 0.83449 0.99567 0.89450 1.19143 0.93975 0.92057 1.05353 1.20683 0.97727 0.93823 1.00339 1.21208 0.98478 0.93974 1.02461 1.21218 0.90897 1.00823 0.99133 1.20434 1.01418 0.87588 1.04071 1.18459 0.88592 0.89858 1.05884 0.89022 0.88295 0.86988 0.76834 0.86314 0.88252 0.94463 0.87878 0.93428 0.95354 0.94645 0.93236 0.99086 0.89502 0.84628 0.81798 0.82094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 10.98 127.77 1.40 1.84 16 2 N -0.47 -9.12 3.14 -538.61 -1.69 -10.81 16 3 C 0.13 3.12 10.51 83.69 0.88 4.00 16 4 C -0.27 -9.84 6.27 -19.01 -0.12 -9.96 16 5 C 0.60 27.76 8.00 86.52 0.69 28.46 16 6 O -0.59 -35.74 15.35 -4.28 -0.07 -35.80 16 7 N -0.64 -24.23 3.33 -870.03 -2.89 -27.12 16 8 C 0.10 2.27 6.45 81.18 0.52 2.80 16 9 C -0.10 -2.66 4.57 -10.50 -0.05 -2.70 16 10 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 11 C -0.10 -3.23 5.71 30.66 0.17 -3.06 16 12 C 0.14 5.93 6.46 86.42 0.56 6.49 16 13 N -0.60 -33.42 3.02 -707.26 -2.14 -35.56 16 14 C -0.26 -16.41 9.42 84.03 0.79 -15.62 16 15 H 0.05 3.02 7.83 -2.91 -0.02 2.99 16 16 C -0.04 -2.57 5.30 84.86 0.45 -2.12 16 17 N -0.93 -62.14 10.65 21.65 0.23 -61.91 16 18 Si 0.96 51.65 29.56 68.60 2.03 53.68 16 19 H -0.29 -15.91 7.11 99.48 0.71 -15.20 16 20 H -0.29 -15.41 7.11 99.48 0.71 -14.70 16 21 H -0.26 -13.26 7.11 99.48 0.71 -12.56 16 22 C 0.18 10.03 4.52 85.91 0.39 10.42 16 23 C 0.10 4.00 4.03 38.69 0.16 4.16 16 24 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 25 C -0.10 -3.75 6.27 -20.08 -0.13 -3.87 16 26 C -0.11 -4.16 9.86 22.40 0.22 -3.94 16 27 C -0.14 -4.11 10.03 22.28 0.22 -3.89 16 28 C -0.10 -2.15 10.01 22.28 0.22 -1.93 16 29 C -0.12 -2.31 9.91 22.37 0.22 -2.09 16 30 C 0.08 2.02 6.79 38.91 0.26 2.28 16 31 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.10 0.42 8.03 -2.39 -0.02 0.40 16 33 H 0.11 0.23 8.13 -2.38 -0.02 0.21 16 34 H 0.22 3.08 5.12 -2.91 -0.01 3.06 16 35 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.10 1.56 6.22 -2.39 -0.01 1.55 16 37 H 0.04 1.33 7.69 -2.39 -0.02 1.31 16 38 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.05 2.03 7.90 -2.39 -0.02 2.01 16 40 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.24 15.95 8.31 -92.71 -0.77 15.18 16 42 H 0.05 3.30 5.07 -2.39 -0.01 3.29 16 43 H -0.01 -0.51 7.95 -2.38 -0.02 -0.53 16 44 H 0.09 4.08 7.46 -2.91 -0.02 4.05 16 45 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 46 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 47 H 0.16 1.79 8.01 -2.91 -0.02 1.76 16 Total: -1.00 -100.35 374.16 3.33 -97.02 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.98 Total: 9.25 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 6.88 Total: 11.25 kcal Atomic # 7 Polarization: -128.90 SS G_CDS: -6.49 Total: -135.40 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -0.07 Total: -35.80 kcal Atomic # 14 Polarization: 51.65 SS G_CDS: 2.03 Total: 53.68 kcal Total: -100.35 3.33 -97.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084494886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.628 kcal (2) G-P(sol) polarization free energy of solvation -100.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds