Wall clock time and date at job start Sat Apr 11 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99963 * 2 1 4 4 C 1.53010 * 109.46945 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.46825 * 179.97438 * 4 3 2 6 6 C 1.34818 * 126.59450 * 125.00033 * 5 4 3 7 7 C 1.36596 * 106.84499 * 180.02562 * 6 5 4 8 8 C 1.47522 * 125.77340 * 179.97438 * 7 6 5 9 9 O 1.21596 * 120.00044 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00006 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99734 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.46299 * 324.97795 * 11 10 8 13 13 C 1.53037 * 109.46028 * 84.93633 * 11 10 8 14 14 C 1.52762 * 109.38664 * 181.25914 * 13 11 10 15 15 N 1.46930 * 109.00426 * 305.58696 * 14 13 11 16 16 C 1.36935 * 120.62935 * 233.58408 * 15 14 13 17 17 H 1.07992 * 120.00276 * 152.17564 * 16 15 14 18 18 C 1.38815 * 120.00026 * 331.89562 * 16 15 14 19 19 N 1.31620 * 119.99785 * 343.17001 * 18 16 15 20 20 Si 1.86799 * 120.00242 * 163.17219 * 18 16 15 21 21 H 1.48499 * 109.47051 * 59.99668 * 20 18 16 22 22 H 1.48497 * 109.47273 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46803 * 299.99780 * 20 18 16 24 24 C 1.46919 * 118.74055 * 53.31040 * 15 14 13 25 25 C 1.53042 * 109.45881 * 204.99938 * 11 10 8 26 26 H 1.08998 * 109.50244 * 298.56908 * 25 11 10 27 27 O 1.42899 * 109.49408 * 58.66927 * 25 11 10 28 28 N 1.34399 * 108.45282 * 0.24295 * 7 6 5 29 29 N 1.28762 * 109.52781 * 359.58612 * 28 7 6 30 30 H 1.08998 * 109.47557 * 300.00331 * 1 2 3 31 31 H 1.09008 * 109.46768 * 59.99941 * 1 2 3 32 32 H 1.08994 * 109.47134 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47155 * 59.99946 * 3 2 1 34 34 H 1.08999 * 109.47237 * 299.99911 * 3 2 1 35 35 H 1.09004 * 109.46544 * 60.00263 * 4 3 2 36 36 H 1.08999 * 109.47425 * 300.00218 * 4 3 2 37 37 H 1.07997 * 126.57687 * 0.02562 * 6 5 4 38 38 H 0.97003 * 119.99807 * 0.02562 * 10 8 7 39 39 H 1.09005 * 109.49815 * 301.33562 * 13 11 10 40 40 H 1.08999 * 109.49987 * 61.39634 * 13 11 10 41 41 H 1.08999 * 109.50873 * 185.70684 * 14 13 11 42 42 H 1.08996 * 109.43278 * 65.41931 * 14 13 11 43 43 H 0.97003 * 120.00199 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.58944 * 66.42417 * 24 15 14 45 45 H 1.09001 * 109.58966 * 186.85718 * 24 15 14 46 46 H 0.96707 * 114.00148 * 179.84157 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5229 0.0000 6 6 5.0251 3.0052 0.8867 7 6 5.3058 4.2873 0.5083 8 6 6.2371 5.2042 1.1925 9 8 6.8329 4.8355 2.1863 10 7 6.4277 6.4505 0.7161 11 6 7.3522 7.3611 1.3960 12 1 7.3087 7.1868 2.4711 13 6 8.7764 7.1086 0.8961 14 6 9.7430 8.0373 1.6288 15 7 9.2852 9.4246 1.4721 16 6 10.1301 10.3878 0.9890 17 1 9.7307 11.2416 0.4620 18 6 11.4998 10.2697 1.1818 19 7 11.9673 9.4393 2.0896 20 14 12.6792 11.2894 0.1530 21 1 12.4088 12.7326 0.3746 22 1 14.0764 10.9804 0.5497 23 1 12.4899 10.9652 -1.2839 24 6 7.9017 9.7575 1.8377 25 6 6.9540 8.8083 1.0975 26 1 7.0214 8.9904 0.0249 27 8 5.6133 9.0344 1.5370 28 7 4.5854 4.5742 -0.5895 29 7 3.8814 3.5488 -0.9224 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8574 0.6435 -0.8892 36 1 3.8568 0.6438 0.8908 37 1 5.4395 2.4788 1.7338 38 1 5.9521 6.7447 -0.0765 39 1 9.0508 6.0712 1.0879 40 1 8.8265 7.3061 -0.1747 41 1 10.7414 7.9318 1.2042 42 1 9.7643 7.7768 2.6870 43 1 12.9244 9.3565 2.2242 44 1 7.7697 9.6401 2.9133 45 1 7.6855 10.7866 1.5511 46 1 5.2947 9.9341 1.3812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090257549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:49 Heat of formation + Delta-G solvation = -5.028283 kcal Electronic energy + Delta-G solvation = -29195.686190 eV Core-core repulsion = 24930.851113 eV Total energy + Delta-G solvation = -4264.835077 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.42860 -39.54619 -38.63896 -37.81618 -35.36733 -35.28594 -34.26475 -31.97909 -31.37910 -30.49713 -29.67896 -28.46987 -27.02571 -25.34124 -24.49987 -23.59731 -22.29976 -22.07988 -21.66210 -20.18405 -19.52278 -18.26468 -17.29457 -17.00005 -16.89849 -16.49522 -16.25767 -15.98446 -15.84239 -15.43767 -14.87782 -14.73227 -14.53358 -14.22590 -14.01532 -13.86977 -13.54535 -13.17506 -12.88054 -12.73714 -12.60682 -12.24706 -12.20225 -12.03196 -11.98569 -11.53957 -11.44098 -11.08645 -10.83966 -10.69504 -10.66123 -10.37947 -10.31923 -10.24808 -10.02295 -9.89182 -9.68998 -9.49372 -9.44339 -8.70923 -8.42110 -6.74508 -5.82519 -3.26576 0.87898 1.56281 1.63302 3.10718 3.30794 3.37602 3.41046 3.43455 3.44170 3.95326 4.07568 4.18803 4.40143 4.51122 4.54360 4.62187 4.68738 4.74525 4.79651 4.86216 4.97979 5.10340 5.18593 5.33580 5.35276 5.50254 5.60478 5.62688 5.81213 6.00767 6.01499 6.14803 6.35725 6.38149 6.51851 6.55637 6.70216 6.80703 6.88801 7.32292 7.59453 7.63988 7.75201 7.86653 7.97634 8.39671 8.40703 9.15762 9.78127 10.34006 11.26115 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028841 B = 0.001969 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.615638 B =14218.344472 C =14546.382020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.050 3.950 4 C 0.126 3.874 5 N -0.364 5.364 6 C 0.096 3.904 7 C -0.092 4.092 8 C 0.601 3.399 9 O -0.540 6.540 10 N -0.698 5.698 11 C 0.163 3.837 12 H 0.090 0.910 13 C -0.147 4.147 14 C 0.171 3.829 15 N -0.588 5.588 16 C -0.260 4.260 17 H 0.067 0.933 18 C 0.005 3.995 19 N -0.899 5.899 20 Si 0.905 3.095 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.122 3.878 25 C 0.079 3.921 26 H 0.057 0.943 27 O -0.570 6.570 28 N -0.200 5.200 29 N -0.068 5.068 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.207 0.793 38 H 0.404 0.596 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.024 0.976 43 H 0.256 0.744 44 H 0.029 0.971 45 H 0.060 0.940 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.657 -17.020 -4.095 27.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.151 5.151 6 C -0.060 4.060 7 C -0.231 4.231 8 C 0.384 3.616 9 O -0.417 6.417 10 N -0.346 5.346 11 C 0.059 3.941 12 H 0.108 0.892 13 C -0.187 4.187 14 C 0.045 3.955 15 N -0.312 5.312 16 C -0.389 4.389 17 H 0.084 0.916 18 C -0.194 4.194 19 N -0.543 5.543 20 Si 0.734 3.266 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.210 1.210 24 C -0.006 4.006 25 C 0.018 3.982 26 H 0.075 0.925 27 O -0.375 6.375 28 N -0.074 5.074 29 N -0.048 5.048 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.224 0.776 38 H 0.239 0.761 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.042 0.958 43 H 0.066 0.934 44 H 0.047 0.953 45 H 0.079 0.921 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -20.680 -17.723 -4.391 27.587 hybrid contribution 0.618 0.982 -0.188 1.175 sum -20.062 -16.741 -4.579 26.527 Atomic orbital electron populations 1.22810 0.79618 1.03299 1.00566 1.87779 1.20831 1.26471 1.95637 1.22631 0.91926 0.85780 1.02472 1.21676 0.93155 0.78088 1.06628 1.50265 1.30821 1.13533 1.20476 1.23418 0.91972 0.94963 0.95649 1.21644 1.06866 0.95588 0.99013 1.16714 0.80290 0.81451 0.83169 1.90819 1.49224 1.76092 1.25556 1.45888 1.45038 1.12420 1.31255 1.21071 0.88684 0.86088 0.98212 0.89205 1.22551 0.93988 1.00931 1.01273 1.20746 0.96703 0.81387 0.96663 1.44012 1.07007 1.05161 1.74980 1.19123 0.87594 1.03340 1.28841 0.91578 1.25067 0.97789 0.99124 0.97398 1.70025 1.12818 1.39653 1.31802 0.86343 0.80118 0.79896 0.80225 1.20841 1.21583 1.20967 1.21530 0.86315 0.96128 0.96633 1.22782 0.82069 0.95182 0.98127 0.92460 1.86488 1.29662 1.35093 1.86218 1.74652 1.03741 1.18746 1.10232 1.81976 1.20569 0.90453 1.11784 0.93648 0.93537 0.88999 0.92255 0.91216 0.87351 0.86677 0.77621 0.76101 0.91797 0.92241 0.88857 0.95780 0.93408 0.95266 0.92142 0.77986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.51 10.70 -35.23 -0.38 -2.89 16 3 C 0.05 0.29 6.14 37.16 0.23 0.52 16 4 C 0.13 0.69 6.91 -4.04 -0.03 0.66 16 5 N -0.36 -3.30 3.69 -61.06 -0.23 -3.53 16 6 C 0.10 0.97 11.27 -16.83 -0.19 0.78 16 7 C -0.09 -1.25 6.99 -83.55 -0.58 -1.83 16 8 C 0.60 9.83 7.78 -12.48 -0.10 9.74 16 9 O -0.54 -10.21 16.53 5.28 0.09 -10.12 16 10 N -0.70 -11.37 4.92 -54.81 -0.27 -11.64 16 11 C 0.16 3.01 2.12 -67.89 -0.14 2.86 16 12 H 0.09 1.86 7.58 -51.93 -0.39 1.46 16 13 C -0.15 -2.93 5.63 -26.83 -0.15 -3.08 16 14 C 0.17 4.10 5.28 -3.93 -0.02 4.08 16 15 N -0.59 -14.41 3.00 -172.59 -0.52 -14.93 16 16 C -0.26 -6.96 9.58 -15.06 -0.14 -7.10 16 17 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 18 C 0.01 0.15 4.92 -17.43 -0.09 0.06 16 19 N -0.90 -25.83 11.18 55.49 0.62 -25.21 16 20 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 C 0.12 2.48 6.14 -3.71 -0.02 2.46 16 25 C 0.08 1.39 3.14 -26.61 -0.08 1.30 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 O -0.57 -8.85 13.16 -35.23 -0.46 -9.31 16 28 N -0.20 -2.77 12.04 32.85 0.40 -2.37 16 29 N -0.07 -0.82 13.65 60.35 0.82 0.00 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.05 0.17 8.14 -51.92 -0.42 -0.25 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.12 0.36 8.08 -51.93 -0.42 -0.06 16 37 H 0.21 1.44 8.06 -52.49 -0.42 1.01 16 38 H 0.40 6.06 8.29 -40.82 -0.34 5.73 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.09 2.48 6.05 -51.93 -0.31 2.16 16 42 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 46 H 0.37 4.19 9.08 45.56 0.41 4.60 16 LS Contribution 387.52 15.07 5.84 5.84 Total: -1.00 -33.98 387.52 -5.41 -39.39 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.09 Total: 6.74 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: -0.21 Total: 11.70 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.83 Total: -57.69 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.75 Total: -22.32 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.98 -5.41 -39.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090257549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.363 kcal (2) G-P(sol) polarization free energy of solvation -33.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds