Wall clock time and date at job start Sat Apr 11 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40444 * 126.82381 * 2 1 4 4 C 1.30716 * 106.79694 * 179.97438 * 3 2 1 5 5 N 1.33239 * 108.94095 * 359.76726 * 4 3 2 6 6 C 1.30832 * 109.83357 * 0.39841 * 5 4 3 7 7 C 1.50705 * 125.96129 * 179.86642 * 6 5 4 8 8 O 1.42896 * 109.46872 * 269.68815 * 7 6 5 9 9 C 1.42905 * 113.99662 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46799 * 180.02562 * 9 8 7 11 11 O 1.21275 * 120.00484 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99358 * 180.02562 * 10 9 8 13 13 C 1.46512 * 119.99782 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.45943 * 325.03106 * 13 12 10 15 15 C 1.53044 * 109.45708 * 85.00225 * 13 12 10 16 16 C 1.53187 * 109.31375 * 58.65657 * 15 13 12 17 17 N 1.46926 * 108.77629 * 54.63309 * 16 15 13 18 18 C 1.36940 * 120.62975 * 126.36813 * 17 16 15 19 19 H 1.07994 * 119.99945 * 332.44875 * 18 17 16 20 20 C 1.38814 * 119.99741 * 152.45397 * 18 17 16 21 21 N 1.31619 * 120.00115 * 342.76707 * 20 18 17 22 22 Si 1.86800 * 119.99880 * 162.77431 * 20 18 17 23 23 H 1.48496 * 109.47117 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.46804 * 299.99548 * 22 20 18 25 25 H 1.48500 * 109.47109 * 59.99370 * 22 20 18 26 26 C 1.46930 * 118.73855 * 306.64256 * 17 16 15 27 27 C 1.52766 * 109.00665 * 53.30825 * 26 17 16 28 28 H 1.09004 * 109.35765 * 65.49989 * 27 26 17 29 29 O 1.42900 * 109.58891 * 185.53442 * 27 26 17 30 30 H 1.09008 * 109.46779 * 270.03427 * 1 2 3 31 31 H 1.08996 * 109.47566 * 30.03154 * 1 2 3 32 32 H 1.08998 * 109.47142 * 150.03959 * 1 2 3 33 33 H 1.07998 * 125.52859 * 180.02562 * 4 3 2 34 34 H 1.08999 * 109.46503 * 149.69156 * 7 6 5 35 35 H 1.08994 * 109.47050 * 29.69657 * 7 6 5 36 36 H 1.09002 * 109.46591 * 60.01002 * 9 8 7 37 37 H 1.08993 * 109.47369 * 300.00343 * 9 8 7 38 38 H 0.97002 * 120.00925 * 0.02562 * 12 10 9 39 39 H 1.09003 * 109.49377 * 298.70155 * 15 13 12 40 40 H 1.09002 * 109.51969 * 178.62480 * 15 13 12 41 41 H 1.09004 * 109.58464 * 294.84792 * 16 15 13 42 42 H 1.08993 * 109.70417 * 174.49249 * 16 15 13 43 43 H 0.96998 * 120.00327 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.58242 * 173.14315 * 26 17 16 45 45 H 1.08994 * 109.58811 * 293.56959 * 26 17 16 46 46 H 0.96706 * 114.00105 * 299.98481 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1242 0.0000 4 6 3.5349 0.6766 0.0006 5 7 3.5096 -0.6556 0.0060 6 6 2.2707 -1.0761 0.0005 7 6 1.8248 -2.5156 0.0011 8 8 1.6838 -2.9711 -1.3460 9 6 1.2628 -4.3321 -1.4583 10 6 1.1483 -4.7040 -2.9142 11 8 1.4027 -3.8845 -3.7713 12 7 0.7632 -5.9474 -3.2638 13 6 0.6525 -6.3092 -4.6792 14 1 0.3035 -5.4474 -5.2480 15 6 2.0230 -6.7447 -5.2028 16 6 2.5256 -7.9343 -4.3788 17 7 1.5059 -8.9918 -4.4044 18 6 1.8302 -10.2645 -4.7922 19 1 2.6489 -10.4281 -5.4773 20 6 1.1067 -11.3441 -4.3047 21 7 0.3514 -11.2017 -3.2362 22 14 1.2050 -12.9993 -5.1651 23 1 0.3463 -13.9792 -4.4528 24 1 0.7363 -12.8569 -6.5671 25 1 2.6109 -13.4774 -5.1593 26 6 0.1303 -8.6564 -4.0119 27 6 -0.3442 -7.4600 -4.8347 28 1 -0.4085 -7.7461 -5.8846 29 8 -1.6309 -7.0421 -4.3746 30 1 -0.3633 0.0006 1.0278 31 1 -0.3634 0.8896 -0.5143 32 1 -0.3633 -0.8903 -0.5132 33 1 4.4255 1.2874 0.0011 34 1 0.8671 -2.5990 0.5149 35 1 2.5673 -3.1258 0.5152 36 1 0.2935 -4.4536 -0.9746 37 1 1.9940 -4.9797 -0.9746 38 1 0.5594 -6.6028 -2.5783 39 1 2.7265 -5.9169 -5.1132 40 1 1.9369 -7.0374 -6.2492 41 1 2.6991 -7.6188 -3.3499 42 1 3.4542 -8.3116 -4.8068 43 1 -0.1539 -11.9563 -2.8954 44 1 -0.5216 -9.5094 -4.2003 45 1 0.1045 -8.4011 -2.9526 46 1 -2.3138 -7.7233 -4.4439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100057708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:16 Heat of formation + Delta-G solvation = -3.502909 kcal Electronic energy + Delta-G solvation = -29752.216032 eV Core-core repulsion = 25487.447100 eV Total energy + Delta-G solvation = -4264.768932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.37886 -39.96795 -38.45409 -37.36349 -35.34554 -34.38023 -34.11590 -32.34264 -32.02588 -30.05361 -29.09669 -28.55911 -27.53714 -26.33227 -25.22951 -22.44741 -22.30892 -21.88590 -21.04304 -20.73913 -18.79078 -17.75585 -17.33843 -17.10720 -16.83716 -16.58646 -16.39418 -15.94776 -15.34662 -15.04591 -14.99412 -14.83363 -14.34016 -14.04759 -13.78727 -13.72567 -13.53490 -13.40477 -13.38181 -12.82852 -12.53819 -12.38657 -12.17932 -11.89253 -11.86940 -11.72400 -11.13220 -11.05819 -10.85747 -10.50088 -10.31024 -10.27564 -10.12531 -10.04760 -10.04418 -9.95007 -9.72643 -9.53665 -9.39040 -8.74251 -8.58773 -6.84198 -5.94689 -3.37587 1.15251 1.96031 2.49957 2.81555 3.01585 3.29667 3.35775 3.37313 3.62731 4.12680 4.16901 4.35483 4.41577 4.53976 4.70128 4.74148 4.79182 4.90014 4.99404 5.05300 5.06440 5.19951 5.20214 5.34806 5.41535 5.65424 5.78318 5.87920 5.95739 5.99269 6.14116 6.19237 6.37157 6.39826 6.41895 6.58224 6.67386 6.75618 6.89662 6.99691 7.33873 7.65896 7.78912 7.79759 8.02797 8.28881 8.46263 9.04210 9.66979 10.22300 11.13634 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023782 B = 0.002159 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.102468 B =12967.456570 C =13212.828506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.368 5.368 3 N -0.317 5.317 4 C 0.200 3.800 5 N -0.525 5.525 6 C 0.282 3.718 7 C 0.140 3.860 8 O -0.355 6.355 9 C 0.044 3.956 10 C 0.514 3.486 11 O -0.530 6.530 12 N -0.702 5.702 13 C 0.168 3.832 14 H 0.079 0.921 15 C -0.146 4.146 16 C 0.146 3.854 17 N -0.588 5.588 18 C -0.255 4.255 19 H 0.068 0.932 20 C 0.003 3.997 21 N -0.903 5.903 22 Si 0.904 3.096 23 H -0.290 1.290 24 H -0.283 1.283 25 H -0.282 1.282 26 C 0.146 3.854 27 C 0.067 3.933 28 H 0.062 0.938 29 O -0.573 6.573 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.220 0.780 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.405 0.595 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.020 0.980 42 H 0.057 0.943 43 H 0.255 0.745 44 H 0.093 0.907 45 H 0.024 0.976 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.712 15.886 8.096 18.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.160 5.160 3 N -0.146 5.146 4 C -0.103 4.103 5 N -0.253 5.253 6 C 0.005 3.995 7 C 0.060 3.940 8 O -0.271 6.271 9 C -0.036 4.036 10 C 0.299 3.701 11 O -0.407 6.407 12 N -0.356 5.356 13 C 0.064 3.936 14 H 0.097 0.903 15 C -0.186 4.186 16 C 0.020 3.980 17 N -0.312 5.312 18 C -0.384 4.384 19 H 0.086 0.914 20 C -0.195 4.195 21 N -0.548 5.548 22 Si 0.734 3.266 23 H -0.216 1.216 24 H -0.210 1.210 25 H -0.208 1.208 26 C 0.019 3.981 27 C 0.006 3.994 28 H 0.080 0.920 29 O -0.378 6.378 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.237 0.763 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.241 0.759 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.111 0.889 45 H 0.042 0.958 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.273 17.555 7.511 19.229 hybrid contribution -0.596 -2.001 0.042 2.088 sum -2.869 15.554 7.554 17.528 Atomic orbital electron populations 1.22046 0.73461 1.05638 1.03860 1.50258 1.08202 1.03881 1.53652 1.78053 1.02237 1.08052 1.26251 1.26003 0.95823 0.90266 0.98205 1.70466 1.19440 1.11669 1.23762 1.23729 0.86385 0.91661 0.97712 1.20668 1.01263 0.86189 0.85852 1.88071 1.89040 1.26547 1.23464 1.22306 1.01254 0.83943 0.96049 1.19976 0.77702 0.82517 0.89941 1.90713 1.48795 1.49596 1.51551 1.45856 1.68185 1.12302 1.09246 1.20812 0.94958 0.96720 0.81127 0.90299 1.22414 0.95720 0.99566 1.00899 1.20917 0.92568 0.88246 0.96303 1.43953 1.02731 1.06027 1.78488 1.19166 1.16513 0.82106 1.20657 0.91436 1.25044 1.00712 0.97832 0.95947 1.69997 1.32703 1.30999 1.21064 0.86342 0.77728 0.83398 0.79162 1.21601 1.20970 1.20769 1.21308 0.87788 0.94505 0.94498 1.22857 0.82143 0.95483 0.98927 0.91992 1.86406 1.19760 1.43380 1.88233 0.89959 0.88621 0.88516 0.76328 0.90559 0.88788 0.89826 0.89443 0.75901 0.91605 0.91066 0.96179 0.92406 0.93464 0.88931 0.95791 0.77698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 11.16 59.85 0.67 1.26 16 2 N -0.37 -4.00 4.04 -65.10 -0.26 -4.26 16 3 N -0.32 -3.85 12.70 29.29 0.37 -3.48 16 4 C 0.20 2.26 13.03 -91.81 -1.20 1.07 16 5 N -0.52 -6.92 11.19 -11.97 -0.13 -7.06 16 6 C 0.28 3.31 7.61 -155.69 -1.19 2.12 16 7 C 0.14 1.27 6.06 36.01 0.22 1.49 16 8 O -0.35 -4.53 9.86 -55.14 -0.54 -5.08 16 9 C 0.04 0.49 6.42 36.01 0.23 0.72 16 10 C 0.51 8.03 7.87 -10.98 -0.09 7.95 16 11 O -0.53 -10.50 16.16 -14.35 -0.23 -10.73 16 12 N -0.70 -10.92 4.15 -53.76 -0.22 -11.14 16 13 C 0.17 2.89 2.47 -67.88 -0.17 2.72 16 14 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 15 C -0.15 -2.54 5.77 -26.61 -0.15 -2.70 16 16 C 0.15 2.86 6.26 -3.71 -0.02 2.84 16 17 N -0.59 -13.36 3.00 -172.58 -0.52 -13.88 16 18 C -0.26 -6.51 9.58 -15.06 -0.14 -6.65 16 19 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 20 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 21 N -0.90 -24.11 11.19 55.49 0.62 -23.49 16 22 Si 0.90 20.47 29.59 -169.99 -5.03 15.44 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.15 3.03 4.61 -3.93 -0.02 3.02 16 27 C 0.07 1.17 3.34 -26.83 -0.09 1.08 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 O -0.57 -9.11 13.21 -35.23 -0.47 -9.58 16 30 H 0.08 0.34 8.14 -51.92 -0.42 -0.09 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.53 7.72 -51.93 -0.40 0.13 16 33 H 0.22 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.08 0.42 7.76 -51.93 -0.40 0.02 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.40 6.00 6.88 -40.82 -0.28 5.72 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.02 0.40 7.74 -51.93 -0.40 -0.01 16 42 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 43 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 44 H 0.09 2.18 6.04 -51.93 -0.31 1.86 16 45 H 0.02 0.52 6.64 -51.93 -0.34 0.17 16 46 H 0.38 4.73 9.08 45.56 0.41 5.14 16 LS Contribution 382.26 15.07 5.76 5.76 Total: -1.00 -35.45 382.26 -8.58 -44.02 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.89 Total: 8.57 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: -2.03 Total: 14.91 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: -0.14 Total: -63.32 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -1.24 Total: -25.38 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.45 -8.58 -44.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100057708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.521 kcal (2) G-P(sol) polarization free energy of solvation -35.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds