Wall clock time and date at job start Sat Apr 11 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40444 * 126.82381 * 2 1 4 4 C 1.30716 * 106.79694 * 179.97438 * 3 2 1 5 5 N 1.33239 * 108.94095 * 359.76726 * 4 3 2 6 6 C 1.30832 * 109.83357 * 0.39841 * 5 4 3 7 7 C 1.50705 * 125.96129 * 179.86642 * 6 5 4 8 8 O 1.42896 * 109.46872 * 269.68815 * 7 6 5 9 9 C 1.42905 * 113.99662 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46799 * 180.02562 * 9 8 7 11 11 O 1.21275 * 120.00484 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99358 * 180.02562 * 10 9 8 13 13 C 1.46512 * 119.99782 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.45943 * 325.03106 * 13 12 10 15 15 C 1.53044 * 109.45708 * 85.00225 * 13 12 10 16 16 C 1.53187 * 109.31375 * 58.65657 * 15 13 12 17 17 N 1.46926 * 108.77629 * 54.63309 * 16 15 13 18 18 C 1.36940 * 120.62975 * 126.36813 * 17 16 15 19 19 H 1.07994 * 119.99945 * 332.44875 * 18 17 16 20 20 C 1.38814 * 119.99741 * 152.45397 * 18 17 16 21 21 N 1.31619 * 120.00115 * 342.76707 * 20 18 17 22 22 Si 1.86800 * 119.99880 * 162.77431 * 20 18 17 23 23 H 1.48496 * 109.47117 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.46804 * 299.99548 * 22 20 18 25 25 H 1.48500 * 109.47109 * 59.99370 * 22 20 18 26 26 C 1.46930 * 118.73855 * 306.64256 * 17 16 15 27 27 C 1.52766 * 109.00665 * 53.30825 * 26 17 16 28 28 H 1.09004 * 109.35765 * 65.49989 * 27 26 17 29 29 O 1.42900 * 109.58891 * 185.53442 * 27 26 17 30 30 H 1.09008 * 109.46779 * 270.03427 * 1 2 3 31 31 H 1.08996 * 109.47566 * 30.03154 * 1 2 3 32 32 H 1.08998 * 109.47142 * 150.03959 * 1 2 3 33 33 H 1.07998 * 125.52859 * 180.02562 * 4 3 2 34 34 H 1.08999 * 109.46503 * 149.69156 * 7 6 5 35 35 H 1.08994 * 109.47050 * 29.69657 * 7 6 5 36 36 H 1.09002 * 109.46591 * 60.01002 * 9 8 7 37 37 H 1.08993 * 109.47369 * 300.00343 * 9 8 7 38 38 H 0.97002 * 120.00925 * 0.02562 * 12 10 9 39 39 H 1.09003 * 109.49377 * 298.70155 * 15 13 12 40 40 H 1.09002 * 109.51969 * 178.62480 * 15 13 12 41 41 H 1.09004 * 109.58464 * 294.84792 * 16 15 13 42 42 H 1.08993 * 109.70417 * 174.49249 * 16 15 13 43 43 H 0.96998 * 120.00327 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.58242 * 173.14315 * 26 17 16 45 45 H 1.08994 * 109.58811 * 293.56959 * 26 17 16 46 46 H 0.96706 * 114.00105 * 299.98481 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1242 0.0000 4 6 3.5349 0.6766 0.0006 5 7 3.5096 -0.6556 0.0060 6 6 2.2707 -1.0761 0.0005 7 6 1.8248 -2.5156 0.0011 8 8 1.6838 -2.9711 -1.3460 9 6 1.2628 -4.3321 -1.4583 10 6 1.1483 -4.7040 -2.9142 11 8 1.4027 -3.8845 -3.7713 12 7 0.7632 -5.9474 -3.2638 13 6 0.6525 -6.3092 -4.6792 14 1 0.3035 -5.4474 -5.2480 15 6 2.0230 -6.7447 -5.2028 16 6 2.5256 -7.9343 -4.3788 17 7 1.5059 -8.9918 -4.4044 18 6 1.8302 -10.2645 -4.7922 19 1 2.6489 -10.4281 -5.4773 20 6 1.1067 -11.3441 -4.3047 21 7 0.3514 -11.2017 -3.2362 22 14 1.2050 -12.9993 -5.1651 23 1 0.3463 -13.9792 -4.4528 24 1 0.7363 -12.8569 -6.5671 25 1 2.6109 -13.4774 -5.1593 26 6 0.1303 -8.6564 -4.0119 27 6 -0.3442 -7.4600 -4.8347 28 1 -0.4085 -7.7461 -5.8846 29 8 -1.6309 -7.0421 -4.3746 30 1 -0.3633 0.0006 1.0278 31 1 -0.3634 0.8896 -0.5143 32 1 -0.3633 -0.8903 -0.5132 33 1 4.4255 1.2874 0.0011 34 1 0.8671 -2.5990 0.5149 35 1 2.5673 -3.1258 0.5152 36 1 0.2935 -4.4536 -0.9746 37 1 1.9940 -4.9797 -0.9746 38 1 0.5594 -6.6028 -2.5783 39 1 2.7265 -5.9169 -5.1132 40 1 1.9369 -7.0374 -6.2492 41 1 2.6991 -7.6188 -3.3499 42 1 3.4542 -8.3116 -4.8068 43 1 -0.1539 -11.9563 -2.8954 44 1 -0.5216 -9.5094 -4.2003 45 1 0.1045 -8.4011 -2.9526 46 1 -2.3138 -7.7233 -4.4439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100057708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:15 Heat of formation + Delta-G solvation = -29.849124 kcal Electronic energy + Delta-G solvation = -29753.358490 eV Core-core repulsion = 25487.447100 eV Total energy + Delta-G solvation = -4265.911390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.16901 -41.25560 -39.64180 -38.48218 -36.83084 -35.63904 -35.08813 -33.75021 -33.07394 -31.59765 -30.58088 -29.51070 -28.31759 -27.30943 -26.76381 -24.03367 -23.47112 -23.09268 -22.14138 -21.67016 -20.26426 -18.92924 -18.59760 -18.06208 -17.98374 -17.92300 -17.27211 -16.87174 -16.79008 -16.29570 -16.07565 -15.86472 -15.72944 -15.47544 -15.23557 -14.95742 -14.69729 -14.31859 -14.08897 -14.07901 -13.85556 -13.52069 -13.34184 -13.21721 -13.04956 -12.85198 -12.66887 -12.62044 -12.60447 -12.18945 -11.96271 -11.80854 -11.25251 -11.16527 -10.99134 -10.90061 -10.86951 -10.77304 -10.64364 -10.55374 -10.02132 -8.68311 -7.88319 -5.32750 0.35223 1.29194 1.50173 1.52264 1.58101 1.63713 1.65392 2.04524 2.51555 2.81205 3.14632 3.28837 3.36833 3.49268 3.68279 3.70909 3.83987 3.97250 4.15276 4.16878 4.23637 4.27849 4.29838 4.34070 4.35272 4.38540 4.49131 4.54052 4.62299 4.73304 4.91326 4.97113 5.10941 5.19116 5.20592 5.34505 5.37545 5.53217 5.62007 5.68253 5.69289 5.86485 6.37162 6.58649 6.85318 6.98935 7.15021 7.26500 7.82655 8.33623 9.17174 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023782 B = 0.002159 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.102468 B =12967.456570 C =13212.828506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.370 5.370 3 N -0.343 5.343 4 C 0.192 3.808 5 N -0.560 5.560 6 C 0.269 3.731 7 C 0.139 3.861 8 O -0.389 6.389 9 C 0.051 3.949 10 C 0.510 3.490 11 O -0.578 6.578 12 N -0.698 5.698 13 C 0.171 3.829 14 H 0.071 0.929 15 C -0.133 4.133 16 C 0.148 3.852 17 N -0.602 5.602 18 C -0.265 4.265 19 H 0.064 0.936 20 C -0.041 4.041 21 N -0.926 5.926 22 Si 0.961 3.039 23 H -0.294 1.294 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.157 3.843 27 C 0.085 3.915 28 H 0.058 0.942 29 O -0.572 6.572 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.248 0.752 34 H 0.117 0.883 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.410 0.590 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.024 0.976 42 H 0.054 0.946 43 H 0.252 0.748 44 H 0.065 0.935 45 H 0.019 0.981 46 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.449 15.993 8.946 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.162 5.162 3 N -0.172 5.172 4 C -0.110 4.110 5 N -0.290 5.290 6 C -0.008 4.008 7 C 0.061 3.939 8 O -0.306 6.306 9 C -0.028 4.028 10 C 0.297 3.703 11 O -0.457 6.457 12 N -0.351 5.351 13 C 0.066 3.934 14 H 0.089 0.911 15 C -0.173 4.173 16 C 0.022 3.978 17 N -0.327 5.327 18 C -0.395 4.395 19 H 0.082 0.918 20 C -0.237 4.237 21 N -0.571 5.571 22 Si 0.790 3.210 23 H -0.220 1.220 24 H -0.207 1.207 25 H -0.206 1.206 26 C 0.031 3.969 27 C 0.024 3.976 28 H 0.076 0.924 29 O -0.378 6.378 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.264 0.736 34 H 0.135 0.865 35 H 0.124 0.876 36 H 0.141 0.859 37 H 0.129 0.871 38 H 0.247 0.753 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.036 0.964 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.040 17.662 8.376 19.783 hybrid contribution -0.385 -1.989 -0.211 2.037 sum -3.425 15.673 8.166 18.001 Atomic orbital electron populations 1.22399 0.71250 1.06356 1.05816 1.50549 1.09495 1.03350 1.52784 1.77979 1.02787 1.09263 1.27157 1.26619 0.96661 0.90212 0.97518 1.70448 1.20838 1.12627 1.25084 1.24247 0.86332 0.92907 0.97324 1.20968 1.03754 0.84658 0.84568 1.88006 1.89542 1.27263 1.25810 1.22353 1.04046 0.83798 0.92624 1.20823 0.76129 0.81587 0.91780 1.90691 1.50835 1.50767 1.53421 1.45805 1.68047 1.12733 1.08540 1.20655 0.94446 0.96007 0.82319 0.91121 1.22260 0.95980 0.98527 1.00581 1.20955 0.91887 0.88119 0.96801 1.44145 1.04080 1.05896 1.78596 1.19408 1.16299 0.83481 1.20341 0.91807 1.25650 1.00948 1.00510 0.96608 1.70110 1.33487 1.31451 1.22081 0.85444 0.77431 0.79997 0.78144 1.21988 1.20660 1.20606 1.21137 0.86582 0.94600 0.94621 1.22485 0.82981 0.94190 0.97958 0.92376 1.86384 1.19395 1.44030 1.88022 0.87343 0.88418 0.87327 0.73640 0.86492 0.87573 0.85950 0.87109 0.75298 0.91359 0.90932 0.95832 0.92766 0.93906 0.91690 0.96351 0.75878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 11.16 127.77 1.43 2.31 16 2 N -0.37 -7.56 4.04 -359.87 -1.45 -9.01 16 3 N -0.34 -8.15 12.70 -61.25 -0.78 -8.93 16 4 C 0.19 4.29 13.03 180.76 2.36 6.65 16 5 N -0.56 -14.51 11.19 -191.77 -2.15 -16.66 16 6 C 0.27 5.95 7.61 138.23 1.05 7.00 16 7 C 0.14 2.16 6.06 71.24 0.43 2.59 16 8 O -0.39 -9.09 9.86 -129.94 -1.28 -10.38 16 9 C 0.05 0.97 6.42 71.24 0.46 1.43 16 10 C 0.51 15.10 7.87 87.66 0.69 15.79 16 11 O -0.58 -22.57 16.16 16.02 0.26 -22.31 16 12 N -0.70 -20.60 4.15 -442.39 -1.84 -22.44 16 13 C 0.17 5.70 2.47 45.02 0.11 5.81 16 14 H 0.07 2.53 7.58 -2.39 -0.02 2.51 16 15 C -0.13 -4.55 5.77 30.67 0.18 -4.37 16 16 C 0.15 5.70 6.26 86.36 0.54 6.24 16 17 N -0.60 -27.16 3.00 -699.93 -2.10 -29.26 16 18 C -0.27 -13.47 9.58 84.03 0.81 -12.67 16 19 H 0.06 3.22 7.89 -2.91 -0.02 3.20 16 20 C -0.04 -2.10 4.91 84.86 0.42 -1.68 16 21 N -0.93 -49.42 11.19 21.65 0.24 -49.18 16 22 Si 0.96 41.93 29.59 68.60 2.03 43.96 16 23 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 26 C 0.16 6.46 4.61 86.22 0.40 6.85 16 27 C 0.08 2.89 3.34 30.53 0.10 3.00 16 28 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 29 O -0.57 -17.19 13.21 -148.98 -1.97 -19.16 16 30 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.11 0.90 7.72 -2.39 -0.02 0.89 16 33 H 0.25 3.41 8.06 -2.91 -0.02 3.39 16 34 H 0.12 0.81 7.76 -2.39 -0.02 0.79 16 35 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.41 11.36 6.88 -92.71 -0.64 10.72 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.02 0.90 7.74 -2.38 -0.02 0.88 16 42 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 43 H 0.25 13.14 8.31 -92.71 -0.77 12.37 16 44 H 0.06 3.06 6.04 -2.39 -0.01 3.04 16 45 H 0.02 0.78 6.64 -2.39 -0.02 0.76 16 46 H 0.39 9.17 9.08 -74.05 -0.67 8.50 16 Total: -1.00 -77.13 382.26 -0.35 -77.49 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: -0.28 Total: 26.92 kcal Atomic # 6 Polarization: 29.98 SS G_CDS: 8.96 Total: 38.95 kcal Atomic # 7 Polarization: -127.40 SS G_CDS: -8.07 Total: -135.47 kcal Atomic # 8 Polarization: -48.85 SS G_CDS: -2.99 Total: -51.84 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -77.13 -0.35 -77.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100057708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.638 kcal (2) G-P(sol) polarization free energy of solvation -77.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds