Wall clock time and date at job start Sat Apr 11 2020 05:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35880 * 126.07568 * 2 1 4 4 C 1.35590 * 107.57347 * 180.15367 * 3 2 1 5 5 O 1.36232 * 126.04636 * 179.89886 * 4 3 2 6 6 C 1.42905 * 116.99740 * 179.71366 * 5 4 3 7 7 C 1.50699 * 109.46972 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00041 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00169 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47364 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47469 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47372 * 180.02562 * 12 11 10 14 14 C 1.46901 * 111.00245 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47392 * 180.02562 * 14 13 12 16 16 O 1.21293 * 120.00175 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00276 * 180.02562 * 15 14 13 18 18 C 1.37094 * 119.99983 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00383 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99897 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99757 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99936 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47373 * 59.99824 * 22 20 18 24 24 H 1.48504 * 109.46943 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47197 * 299.99465 * 22 20 18 26 26 C 1.40111 * 107.90003 * 359.63676 * 4 3 2 27 27 N 1.30869 * 108.35731 * 0.22458 * 26 4 3 28 28 H 1.08993 * 109.47219 * 270.26667 * 1 2 3 29 29 H 1.09002 * 109.46949 * 30.27086 * 1 2 3 30 30 H 1.09002 * 109.47005 * 150.26895 * 1 2 3 31 31 H 1.07996 * 126.21365 * 0.05343 * 3 2 1 32 32 H 1.09000 * 109.47187 * 300.00125 * 6 5 4 33 33 H 1.09001 * 109.46558 * 60.00172 * 6 5 4 34 34 H 0.96996 * 119.99844 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.46923 * 300.00119 * 10 9 7 36 36 H 1.09004 * 109.47042 * 59.99705 * 10 9 7 37 37 H 1.08992 * 109.47346 * 300.00533 * 11 10 9 38 38 H 1.09004 * 109.46785 * 60.00155 * 11 10 9 39 39 H 1.09004 * 109.46998 * 300.00836 * 12 11 10 40 40 H 1.09004 * 109.46862 * 60.00359 * 12 11 10 41 41 H 1.00904 * 110.99862 * 56.05053 * 13 12 11 42 42 H 1.09000 * 109.46890 * 300.00352 * 14 13 12 43 43 H 1.08995 * 109.47113 * 59.99981 * 14 13 12 44 44 H 0.96998 * 119.99507 * 359.97438 * 17 15 14 45 45 H 0.96997 * 119.99996 * 179.97438 * 21 20 18 46 46 H 1.08000 * 125.82019 * 180.26368 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2652 1.0982 0.0000 4 6 3.5510 0.6680 -0.0035 5 8 4.6607 1.4581 -0.0066 6 6 5.9277 0.7971 -0.0036 7 6 7.0302 1.8245 -0.0071 8 8 6.7578 3.0063 -0.0111 9 7 8.3190 1.4300 -0.0056 10 6 9.3908 2.4287 -0.0084 11 6 10.7473 1.7211 -0.0053 12 6 11.8666 2.7641 -0.0089 13 7 13.1690 2.0847 -0.0066 14 6 14.2701 3.0571 -0.0093 15 6 15.5872 2.3247 -0.0075 16 8 15.6067 1.1120 -0.0037 17 7 16.7434 3.0173 -0.0089 18 6 17.9415 2.3509 -0.0067 19 1 17.9589 1.2711 -0.0042 20 6 19.1336 3.0650 -0.0076 21 7 19.1124 4.3789 -0.0112 22 14 20.7661 2.1571 -0.0054 23 1 20.8589 1.3024 -1.2161 24 1 21.8792 3.1401 -0.0075 25 1 20.8581 1.3071 1.2088 26 6 3.5363 -0.7331 0.0028 27 7 2.2899 -1.1322 0.0049 28 1 -0.3633 0.0048 1.0276 29 1 -0.3633 0.8876 -0.5180 30 1 -0.3633 -0.8924 -0.5097 31 1 1.9366 2.1270 0.0008 32 1 6.0120 0.1772 0.8890 33 1 6.0123 0.1699 -0.8910 34 1 8.5368 0.4848 -0.0020 35 1 9.3065 3.0497 -0.9003 36 1 9.3061 3.0551 0.8797 37 1 10.8313 1.1005 0.8866 38 1 10.8322 1.0946 -0.8933 39 1 11.7823 3.3845 -0.9012 40 1 11.7819 3.3910 0.8788 41 1 13.2463 1.4484 -0.7859 42 1 14.2025 3.6801 -0.9012 43 1 14.2022 3.6854 0.8787 44 1 16.7278 3.9871 -0.0115 45 1 19.9445 4.8774 -0.0114 46 1 4.4053 -1.3743 0.0060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164675187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:53 Heat of formation + Delta-G solvation = -23.792319 kcal Electronic energy + Delta-G solvation = -26669.287384 eV Core-core repulsion = 22403.638637 eV Total energy + Delta-G solvation = -4265.648747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.74781 -40.13035 -38.36225 -38.16185 -36.53899 -34.91818 -33.85312 -33.46511 -31.80634 -31.19081 -30.54468 -28.64093 -27.03892 -26.73879 -24.74514 -23.22795 -21.91148 -21.77323 -21.53189 -20.56396 -19.22625 -18.61713 -17.89775 -17.41604 -16.89491 -16.61140 -16.25804 -16.02284 -15.74330 -15.69360 -15.08580 -14.93530 -14.84113 -14.56661 -14.30952 -14.15308 -13.76562 -13.49738 -13.42074 -13.20175 -13.19530 -12.83968 -12.70983 -12.09465 -11.87524 -11.83507 -11.60658 -11.47906 -11.44240 -11.18794 -11.08213 -10.95257 -10.44384 -10.22077 -10.18212 -9.96564 -9.50355 -9.44233 -8.48114 -8.37984 -8.08579 -7.96432 -6.41888 -3.82875 1.30004 1.80074 2.20855 2.29063 2.33915 3.20069 3.25857 3.28246 3.30431 3.90378 4.06803 4.15777 4.20055 4.28821 4.31434 4.54972 4.59547 4.61184 4.62370 4.78694 4.86393 4.91990 5.00265 5.02035 5.16280 5.21756 5.25496 5.40028 5.46798 5.59672 5.70470 5.78158 5.91905 5.97216 5.99639 6.08528 6.26304 6.38223 6.87838 7.06757 7.12262 7.17672 7.54760 7.62922 7.82165 8.05740 8.60966 9.17422 9.53953 10.05362 10.75814 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.056021 B = 0.001113 C = 0.001093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.689417 B =25148.969977 C =25604.967836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.370 5.370 3 C 0.027 3.973 4 C -0.030 4.030 5 O -0.278 6.278 6 C 0.048 3.952 7 C 0.515 3.485 8 O -0.517 6.517 9 N -0.726 5.726 10 C 0.122 3.878 11 C -0.129 4.129 12 C 0.062 3.938 13 N -0.670 5.670 14 C 0.050 3.950 15 C 0.440 3.560 16 O -0.585 6.585 17 N -0.563 5.563 18 C -0.301 4.301 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.006 4.006 27 N -0.272 5.272 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.184 0.816 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.403 0.597 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.044 -5.582 -0.928 35.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.158 5.158 3 C -0.117 4.117 4 C -0.085 4.085 5 O -0.190 6.190 6 C -0.031 4.031 7 C 0.299 3.701 8 O -0.392 6.392 9 N -0.380 5.380 10 C -0.001 4.001 11 C -0.167 4.167 12 C -0.068 4.068 13 N -0.302 5.302 14 C -0.082 4.082 15 C 0.225 3.775 16 O -0.469 6.469 17 N -0.199 5.199 18 C -0.431 4.431 19 H 0.120 0.880 20 C -0.178 4.178 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.192 4.192 27 N -0.096 5.096 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.201 0.799 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.238 0.762 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.168 0.832 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.082 0.918 46 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -35.943 -6.205 -0.250 36.476 hybrid contribution 1.613 0.620 -0.881 1.939 sum -34.330 -5.585 -1.130 34.800 Atomic orbital electron populations 1.21880 0.73128 1.04752 1.03613 1.48284 1.06626 1.03003 1.57926 1.21570 0.88682 0.93789 1.07706 1.18645 0.87497 0.89389 1.12921 1.86100 1.10555 1.31092 1.91208 1.22342 0.82525 0.94557 1.03696 1.20028 0.83360 0.89661 0.77038 1.90767 1.83087 1.17842 1.47494 1.45829 1.05143 1.10930 1.76065 1.21366 0.85052 0.90873 1.02843 1.21744 0.92187 0.99040 1.03764 1.21827 0.88724 0.95392 1.00877 1.60044 0.99938 1.18739 1.51474 1.21670 0.91030 0.94216 1.01299 1.19809 0.84834 0.88285 0.84526 1.90517 1.87095 1.13763 1.55511 1.41856 1.04648 1.09160 1.64282 1.19663 0.82129 0.93500 1.47790 0.87965 1.25259 0.99788 0.95548 0.97250 1.69603 1.28810 1.05440 1.50462 0.85917 0.80526 0.78691 0.79082 1.19914 1.20961 1.19861 1.24069 0.96295 0.93844 1.04979 1.77286 1.00961 1.08746 1.22567 0.90536 0.89157 0.89081 0.79915 0.89199 0.89226 0.76235 0.91204 0.90977 0.90011 0.91163 0.95197 0.90719 0.83188 0.93800 0.89520 0.77432 0.91795 0.79627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.28 11.48 59.85 0.69 0.97 16 2 N -0.37 -2.61 4.04 -67.84 -0.27 -2.89 16 3 C 0.03 0.20 11.56 -16.71 -0.19 0.00 16 4 C -0.03 -0.26 6.96 -39.83 -0.28 -0.54 16 5 O -0.28 -2.78 9.76 -40.39 -0.39 -3.18 16 6 C 0.05 0.32 5.56 36.01 0.20 0.52 16 7 C 0.51 4.90 7.91 -10.99 -0.09 4.82 16 8 O -0.52 -7.46 16.50 -14.35 -0.24 -7.69 16 9 N -0.73 -5.19 5.56 -60.29 -0.33 -5.52 16 10 C 0.12 1.03 5.67 -4.04 -0.02 1.01 16 11 C -0.13 -1.11 5.59 -26.74 -0.15 -1.26 16 12 C 0.06 0.69 5.68 -3.83 -0.02 0.67 16 13 N -0.67 -10.32 6.13 -115.07 -0.70 -11.03 16 14 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 15 C 0.44 10.34 7.82 -10.99 -0.09 10.25 16 16 O -0.58 -15.78 15.78 5.55 0.09 -15.69 16 17 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 18 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 20 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 21 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 22 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 26 C -0.01 -0.04 11.07 -17.26 -0.19 -0.23 16 27 N -0.27 -2.44 12.57 30.68 0.39 -2.05 16 28 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 32 H 0.09 0.37 8.10 -51.93 -0.42 -0.05 16 33 H 0.09 0.37 8.10 -51.93 -0.42 -0.05 16 34 H 0.40 1.66 8.47 -40.82 -0.35 1.31 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.35 5.49 8.43 -39.29 -0.33 5.16 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.19 0.82 7.69 -52.49 -0.40 0.41 16 LS Contribution 401.97 15.07 6.06 6.06 Total: -1.00 -38.16 401.97 -7.01 -45.17 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -6.83 Total: 9.93 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -0.41 Total: 9.03 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.26 Total: -59.59 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.54 Total: -26.56 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.16 -7.01 -45.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164675187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.381 kcal (2) G-P(sol) polarization free energy of solvation -38.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds