Wall clock time and date at job start Sat Apr 11 2020 05:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35880 * 126.07568 * 2 1 4 4 C 1.35590 * 107.57347 * 180.15367 * 3 2 1 5 5 O 1.36232 * 126.04636 * 179.89886 * 4 3 2 6 6 C 1.42905 * 116.99740 * 179.71366 * 5 4 3 7 7 C 1.50699 * 109.46972 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00041 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00169 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47364 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47469 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47372 * 180.02562 * 12 11 10 14 14 C 1.46901 * 111.00245 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47392 * 180.02562 * 14 13 12 16 16 O 1.21293 * 120.00175 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00276 * 180.02562 * 15 14 13 18 18 C 1.37094 * 119.99983 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00383 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99897 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99757 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99936 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47373 * 59.99824 * 22 20 18 24 24 H 1.48504 * 109.46943 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47197 * 299.99465 * 22 20 18 26 26 C 1.40111 * 107.90003 * 359.63676 * 4 3 2 27 27 N 1.30869 * 108.35731 * 0.22458 * 26 4 3 28 28 H 1.08993 * 109.47219 * 270.26667 * 1 2 3 29 29 H 1.09002 * 109.46949 * 30.27086 * 1 2 3 30 30 H 1.09002 * 109.47005 * 150.26895 * 1 2 3 31 31 H 1.07996 * 126.21365 * 0.05343 * 3 2 1 32 32 H 1.09000 * 109.47187 * 300.00125 * 6 5 4 33 33 H 1.09001 * 109.46558 * 60.00172 * 6 5 4 34 34 H 0.96996 * 119.99844 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.46923 * 300.00119 * 10 9 7 36 36 H 1.09004 * 109.47042 * 59.99705 * 10 9 7 37 37 H 1.08992 * 109.47346 * 300.00533 * 11 10 9 38 38 H 1.09004 * 109.46785 * 60.00155 * 11 10 9 39 39 H 1.09004 * 109.46998 * 300.00836 * 12 11 10 40 40 H 1.09004 * 109.46862 * 60.00359 * 12 11 10 41 41 H 1.00904 * 110.99862 * 56.05053 * 13 12 11 42 42 H 1.09000 * 109.46890 * 300.00352 * 14 13 12 43 43 H 1.08995 * 109.47113 * 59.99981 * 14 13 12 44 44 H 0.96998 * 119.99507 * 359.97438 * 17 15 14 45 45 H 0.96997 * 119.99996 * 179.97438 * 21 20 18 46 46 H 1.08000 * 125.82019 * 180.26368 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2652 1.0982 0.0000 4 6 3.5510 0.6680 -0.0035 5 8 4.6607 1.4581 -0.0066 6 6 5.9277 0.7971 -0.0036 7 6 7.0302 1.8245 -0.0071 8 8 6.7578 3.0063 -0.0111 9 7 8.3190 1.4300 -0.0056 10 6 9.3908 2.4287 -0.0084 11 6 10.7473 1.7211 -0.0053 12 6 11.8666 2.7641 -0.0089 13 7 13.1690 2.0847 -0.0066 14 6 14.2701 3.0571 -0.0093 15 6 15.5872 2.3247 -0.0075 16 8 15.6067 1.1120 -0.0037 17 7 16.7434 3.0173 -0.0089 18 6 17.9415 2.3509 -0.0067 19 1 17.9589 1.2711 -0.0042 20 6 19.1336 3.0650 -0.0076 21 7 19.1124 4.3789 -0.0112 22 14 20.7661 2.1571 -0.0054 23 1 20.8589 1.3024 -1.2161 24 1 21.8792 3.1401 -0.0075 25 1 20.8581 1.3071 1.2088 26 6 3.5363 -0.7331 0.0028 27 7 2.2899 -1.1322 0.0049 28 1 -0.3633 0.0048 1.0276 29 1 -0.3633 0.8876 -0.5180 30 1 -0.3633 -0.8924 -0.5097 31 1 1.9366 2.1270 0.0008 32 1 6.0120 0.1772 0.8890 33 1 6.0123 0.1699 -0.8910 34 1 8.5368 0.4848 -0.0020 35 1 9.3065 3.0497 -0.9003 36 1 9.3061 3.0551 0.8797 37 1 10.8313 1.1005 0.8866 38 1 10.8322 1.0946 -0.8933 39 1 11.7823 3.3845 -0.9012 40 1 11.7819 3.3910 0.8788 41 1 13.2463 1.4484 -0.7859 42 1 14.2025 3.6801 -0.9012 43 1 14.2022 3.6854 0.8787 44 1 16.7278 3.9871 -0.0115 45 1 19.9445 4.8774 -0.0114 46 1 4.4053 -1.3743 0.0060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164675187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:52 Heat of formation + Delta-G solvation = -55.074912 kcal Electronic energy + Delta-G solvation = -26670.643899 eV Core-core repulsion = 22403.638637 eV Total energy + Delta-G solvation = -4267.005262 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25741 -40.84957 -40.14316 -38.81030 -37.57990 -36.10855 -35.63356 -33.86924 -33.29286 -32.63199 -31.13096 -29.39115 -28.15178 -27.30371 -26.30193 -24.41968 -22.57916 -22.45300 -22.08223 -21.27074 -20.99445 -19.89403 -19.13464 -18.09572 -17.84012 -17.48599 -17.18277 -17.05958 -16.58820 -16.38379 -16.34946 -15.99279 -15.90037 -15.57144 -15.27784 -15.21319 -14.96348 -14.79056 -14.28872 -14.25253 -13.56966 -13.50710 -13.41763 -13.33074 -13.23217 -13.16257 -12.84351 -12.68175 -12.42051 -12.40215 -12.11524 -12.11262 -11.82123 -11.72692 -11.49089 -10.97361 -10.45410 -10.34309 -10.15294 -10.01122 -9.31731 -8.91601 -8.45922 -5.94937 0.79076 1.36610 1.40908 1.42881 1.51583 1.53824 1.73978 1.80914 2.06066 2.30143 2.71058 2.98127 3.21605 3.53976 3.63688 3.81311 3.88699 4.03141 4.15010 4.16466 4.21231 4.22830 4.26345 4.35155 4.47067 4.50139 4.58069 4.59151 4.60723 4.72522 4.73121 4.74512 4.80960 5.17556 5.22818 5.23113 5.40262 5.41432 5.89491 5.96893 6.10801 6.33605 6.43610 6.52923 6.59722 6.60739 7.13037 7.17921 7.56942 8.11975 8.71330 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.056021 B = 0.001113 C = 0.001093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.689417 B =25148.969977 C =25604.967836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.372 5.372 3 C 0.023 3.977 4 C -0.054 4.054 5 O -0.308 6.308 6 C 0.048 3.952 7 C 0.512 3.488 8 O -0.575 6.575 9 N -0.710 5.710 10 C 0.128 3.872 11 C -0.115 4.115 12 C 0.061 3.939 13 N -0.683 5.683 14 C 0.064 3.936 15 C 0.437 3.563 16 O -0.623 6.623 17 N -0.573 5.573 18 C -0.337 4.337 19 H 0.080 0.920 20 C -0.011 4.011 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.272 1.272 26 C -0.005 4.005 27 N -0.306 5.306 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.203 0.797 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.421 0.579 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.346 0.654 42 H 0.067 0.933 43 H 0.103 0.897 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.772 -6.051 -1.050 36.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.160 5.160 3 C -0.122 4.122 4 C -0.108 4.108 5 O -0.220 6.220 6 C -0.030 4.030 7 C 0.298 3.702 8 O -0.453 6.453 9 N -0.365 5.365 10 C 0.003 3.997 11 C -0.153 4.153 12 C -0.068 4.068 13 N -0.315 5.315 14 C -0.069 4.069 15 C 0.224 3.776 16 O -0.510 6.510 17 N -0.210 5.210 18 C -0.466 4.466 19 H 0.098 0.902 20 C -0.211 4.211 21 N -0.562 5.562 22 Si 0.816 3.184 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.191 4.191 27 N -0.130 5.130 28 H 0.106 0.894 29 H 0.132 0.868 30 H 0.113 0.887 31 H 0.219 0.781 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.258 0.742 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.096 0.904 41 H 0.164 0.836 42 H 0.084 0.916 43 H 0.121 0.879 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -36.691 -6.702 -0.370 37.300 hybrid contribution 1.755 0.771 -0.838 2.092 sum -34.936 -5.930 -1.208 35.456 Atomic orbital electron populations 1.22224 0.71042 1.06154 1.04797 1.48660 1.07848 1.02408 1.57064 1.22033 0.88783 0.94784 1.06619 1.18888 0.87586 0.89892 1.14436 1.86040 1.11697 1.32572 1.91674 1.22514 0.80483 0.93640 1.06363 1.20597 0.84363 0.89442 0.75764 1.90741 1.83962 1.20269 1.50378 1.45693 1.04309 1.11726 1.74743 1.21210 0.85294 0.91020 1.02132 1.21582 0.91115 0.98306 1.04277 1.21918 0.87266 0.96054 1.01569 1.60046 1.00996 1.18875 1.51620 1.21534 0.88163 0.94054 1.03105 1.20899 0.86345 0.88127 0.82200 1.90483 1.88011 1.15784 1.56701 1.41935 1.04767 1.09316 1.65007 1.19659 0.83953 0.92901 1.50122 0.90227 1.26036 1.02560 0.96359 0.96169 1.69666 1.29930 1.06351 1.50240 0.84995 0.76612 0.77784 0.79003 1.19600 1.19523 1.19685 1.24478 0.96785 0.93809 1.03985 1.77227 1.01777 1.10059 1.23985 0.89440 0.86777 0.88711 0.78057 0.86406 0.86345 0.74184 0.91881 0.91904 0.89994 0.90133 0.94103 0.90366 0.83556 0.91556 0.87868 0.76978 0.91278 0.77086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.38 11.48 127.77 1.47 1.85 16 2 N -0.37 -4.90 4.04 -368.56 -1.49 -6.39 16 3 C 0.02 0.32 11.56 83.45 0.96 1.28 16 4 C -0.05 -0.90 6.96 22.11 0.15 -0.74 16 5 O -0.31 -5.97 9.76 -77.16 -0.75 -6.72 16 6 C 0.05 0.56 5.56 71.24 0.40 0.96 16 7 C 0.51 9.28 7.91 87.66 0.69 9.98 16 8 O -0.57 -16.78 16.50 16.00 0.26 -16.51 16 9 N -0.71 -8.95 5.56 -463.05 -2.57 -11.53 16 10 C 0.13 1.99 5.67 86.38 0.49 2.48 16 11 C -0.11 -1.74 5.59 30.59 0.17 -1.57 16 12 C 0.06 1.24 5.68 86.30 0.49 1.74 16 13 N -0.68 -20.04 6.13 -517.96 -3.17 -23.22 16 14 C 0.06 2.13 6.17 85.55 0.53 2.66 16 15 C 0.44 20.57 7.82 87.65 0.69 21.26 16 16 O -0.62 -34.13 15.78 -3.07 -0.05 -34.18 16 17 N -0.57 -29.31 5.29 -306.98 -1.62 -30.93 16 18 C -0.34 -19.10 9.68 84.04 0.81 -18.29 16 19 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 20 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 21 N -0.92 -49.66 13.05 21.66 0.28 -49.38 16 22 Si 0.99 42.67 29.55 68.60 2.03 44.69 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 C -0.01 -0.07 11.07 85.29 0.94 0.87 16 27 N -0.31 -5.24 12.57 -56.85 -0.71 -5.95 16 28 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.20 1.77 8.06 -2.91 -0.02 1.75 16 32 H 0.12 0.68 8.10 -2.39 -0.02 0.66 16 33 H 0.12 0.67 8.10 -2.39 -0.02 0.65 16 34 H 0.42 2.38 8.47 -92.71 -0.79 1.59 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 1.55 8.14 -2.38 -0.02 1.54 16 41 H 0.35 10.49 8.43 -89.69 -0.76 9.73 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 44 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 45 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 46 H 0.21 1.41 7.69 -2.91 -0.02 1.39 16 Total: -1.00 -84.41 401.97 -0.78 -85.19 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: -1.24 Total: 32.60 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 8.26 Total: 22.32 kcal Atomic # 7 Polarization: -118.11 SS G_CDS: -9.29 Total: -127.40 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -0.54 Total: -57.41 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -84.41 -0.78 -85.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164675187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.111 kcal (2) G-P(sol) polarization free energy of solvation -84.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds