Wall clock time and date at job start Sat Apr 11 2020 05:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37020 * 125.65253 * 2 1 4 4 C 1.35141 * 107.87847 * 180.14660 * 3 2 1 5 5 C 1.46656 * 126.37821 * 179.87633 * 4 3 2 6 6 O 1.21704 * 120.00006 * 179.68861 * 5 4 3 7 7 N 1.34777 * 119.99952 * 359.69426 * 5 4 3 8 8 C 1.46506 * 119.99873 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47035 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.46969 * 179.97438 * 9 8 7 11 11 N 1.46905 * 109.46987 * 179.97438 * 10 9 8 12 12 C 1.46895 * 111.00171 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47199 * 180.02562 * 12 11 10 14 14 O 1.21284 * 120.00083 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99867 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00071 * 180.02562 * 15 13 12 17 17 H 1.08004 * 119.99830 * 359.97438 * 16 15 13 18 18 C 1.38955 * 120.00166 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99933 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99744 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47248 * 60.00713 * 20 18 16 22 22 H 1.48505 * 109.46936 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47370 * 300.00129 * 20 18 16 24 24 N 1.39839 * 107.24558 * 359.61653 * 4 3 2 25 25 C 1.46499 * 126.18355 * 180.23960 * 24 4 3 26 26 C 1.34626 * 125.65408 * 179.71428 * 2 1 3 27 27 O 1.21725 * 125.72726 * 359.97438 * 26 2 1 28 28 H 1.09004 * 109.47615 * 270.27991 * 1 2 3 29 29 H 1.09001 * 109.47348 * 30.28630 * 1 2 3 30 30 H 1.09005 * 109.46829 * 150.28209 * 1 2 3 31 31 H 1.08006 * 126.06071 * 0.02562 * 3 2 1 32 32 H 0.96999 * 120.00047 * 359.97438 * 7 5 4 33 33 H 1.09004 * 109.47073 * 299.99562 * 8 7 5 34 34 H 1.09000 * 109.47212 * 59.99645 * 8 7 5 35 35 H 1.09004 * 109.46930 * 299.99770 * 9 8 7 36 36 H 1.09004 * 109.47059 * 59.99372 * 9 8 7 37 37 H 1.08992 * 109.47534 * 299.99582 * 10 9 8 38 38 H 1.08996 * 109.47134 * 60.00388 * 10 9 8 39 39 H 1.00902 * 110.99423 * 56.04590 * 11 10 9 40 40 H 1.09002 * 109.47087 * 300.00137 * 12 11 10 41 41 H 1.09001 * 109.46853 * 60.00161 * 12 11 10 42 42 H 0.97005 * 120.00552 * 0.02562 * 15 13 12 43 43 H 0.96994 * 120.00070 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.47123 * 89.99975 * 25 24 4 45 45 H 1.09004 * 109.46845 * 210.00169 * 25 24 4 46 46 H 1.09007 * 109.47340 * 329.99766 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2636 1.1134 0.0000 4 6 3.5505 0.7008 -0.0033 5 6 4.7392 1.5597 -0.0070 6 8 5.8497 1.0618 -0.0041 7 7 4.6019 2.9004 -0.0136 8 6 5.7894 3.7584 -0.0179 9 6 5.3580 5.2263 -0.0258 10 6 6.5982 6.1223 -0.0297 11 7 6.1840 7.5317 -0.0378 12 6 7.3513 8.4235 -0.0423 13 6 6.8879 9.8574 -0.0500 14 8 5.7020 10.1116 -0.0511 15 7 7.7914 10.8575 -0.0557 16 6 7.3699 12.1621 -0.0621 17 1 6.3138 12.3884 -0.0631 18 6 8.3014 13.1932 -0.0674 19 7 9.5863 12.9179 -0.0657 20 14 7.7270 14.9706 -0.0770 21 1 6.9085 15.2329 1.1341 22 1 8.9071 15.8721 -0.0822 23 1 6.9088 15.2200 -1.2909 24 7 3.5376 -0.6975 0.0036 25 6 4.7120 -1.5732 0.0080 26 6 2.2496 -1.0939 0.0055 27 8 1.8610 -2.2474 0.0116 28 1 -0.3634 0.0050 1.0277 29 1 -0.3634 0.8874 -0.5183 30 1 -0.3633 -0.8926 -0.5095 31 1 1.9247 2.1389 0.0004 32 1 3.7168 3.2973 -0.0163 33 1 6.3849 3.5591 0.8731 34 1 6.3848 3.5503 -0.9069 35 1 4.7628 5.4253 -0.9170 36 1 4.7623 5.4347 0.8629 37 1 7.1930 5.9233 0.8617 38 1 7.1941 5.9140 -0.9182 39 1 5.5765 7.7345 0.7419 40 1 7.9515 8.2408 0.8490 41 1 7.9523 8.2307 -0.9310 42 1 8.7399 10.6543 -0.0552 43 1 10.2365 13.6376 -0.0698 44 1 5.0032 -1.7853 1.0367 45 1 4.4712 -2.5064 -0.5013 46 1 5.5354 -1.0795 -0.5083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177103525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:08 Heat of formation + Delta-G solvation = -50.559509 kcal Electronic energy + Delta-G solvation = -27579.290703 eV Core-core repulsion = 23312.481244 eV Total energy + Delta-G solvation = -4266.809459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.91433 -39.89437 -38.35195 -37.24159 -36.71018 -35.81797 -34.97174 -33.88313 -32.05147 -31.23983 -30.67349 -28.66352 -27.05721 -26.54073 -24.99188 -23.84117 -22.95991 -21.84431 -21.16721 -20.73033 -19.27158 -18.48094 -17.89712 -17.26928 -17.06697 -16.60114 -16.29234 -15.97144 -15.72599 -15.44234 -15.35007 -14.79147 -14.69620 -14.54848 -14.38989 -14.29428 -14.02113 -13.53499 -13.45253 -13.34598 -13.11264 -12.97102 -12.65085 -12.16197 -11.98800 -11.90073 -11.87169 -11.50169 -11.47926 -11.11801 -11.03508 -10.98523 -10.46453 -10.45850 -10.34071 -10.23416 -9.54958 -9.52321 -8.50838 -8.29018 -8.11676 -7.98552 -6.43773 -3.84850 0.81995 1.66594 2.36158 2.38260 2.79231 3.10310 3.18437 3.24483 3.28617 3.88137 4.03337 4.08603 4.25299 4.40451 4.40926 4.55142 4.71581 4.73185 4.77045 4.88935 4.96958 5.01477 5.06220 5.12933 5.23273 5.33837 5.35366 5.41254 5.49724 5.55681 5.74830 5.82635 5.85640 5.93522 5.95017 6.00965 6.15210 6.23769 6.68593 7.00438 7.14229 7.52832 7.59554 7.66335 7.79374 8.03677 8.58761 9.15415 9.51846 10.03087 10.73813 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031980 B = 0.001351 C = 0.001299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.332540 B =20716.305499 C =21547.946736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.523 5.523 3 C 0.057 3.943 4 C -0.036 4.036 5 C 0.592 3.408 6 O -0.534 6.534 7 N -0.716 5.716 8 C 0.123 3.877 9 C -0.130 4.130 10 C 0.062 3.938 11 N -0.670 5.670 12 C 0.051 3.949 13 C 0.440 3.560 14 O -0.585 6.585 15 N -0.563 5.563 16 C -0.302 4.302 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 N -0.510 5.510 25 C 0.100 3.900 26 C 0.648 3.352 27 O -0.564 6.564 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.192 0.808 32 H 0.402 0.598 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.030 0.970 38 H 0.074 0.926 39 H 0.349 0.651 40 H 0.044 0.956 41 H 0.087 0.913 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.093 -25.056 0.843 27.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.240 5.240 3 C -0.074 4.074 4 C -0.145 4.145 5 C 0.378 3.622 6 O -0.412 6.412 7 N -0.368 5.368 8 C 0.000 4.000 9 C -0.168 4.168 10 C -0.068 4.068 11 N -0.302 5.302 12 C -0.082 4.082 13 C 0.225 3.775 14 O -0.469 6.469 15 N -0.199 5.199 16 C -0.431 4.431 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 N -0.230 5.230 25 C -0.041 4.041 26 C 0.350 3.650 27 O -0.441 6.441 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.209 0.791 32 H 0.237 0.763 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.093 0.907 39 H 0.168 0.832 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.226 0.774 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.261 -25.989 0.166 28.737 hybrid contribution 0.298 1.017 0.932 1.411 sum -11.963 -24.972 1.098 27.711 Atomic orbital electron populations 1.21900 0.74328 1.04849 1.03694 1.44978 1.08104 1.06027 1.64887 1.22088 0.87870 0.93572 1.03842 1.19653 0.93889 0.84287 1.16703 1.16684 0.86836 0.81841 0.76842 1.90837 1.26006 1.74191 1.50118 1.45665 1.10820 1.04980 1.75340 1.21401 0.86781 0.88808 1.03040 1.21755 0.99213 0.92029 1.03815 1.21823 0.95747 0.88350 1.00902 1.60047 1.17599 1.01129 1.51426 1.21669 0.92498 0.92730 1.01303 1.19800 0.86987 0.86122 0.84566 1.90513 1.16614 1.84235 1.55551 1.41861 1.08345 1.05483 1.64242 1.19662 0.94676 0.80940 1.47834 0.87958 1.25265 0.94866 1.00500 0.97239 1.69600 1.00318 1.33933 1.50393 0.85910 0.77830 0.81358 0.79066 1.19921 1.20969 1.19878 1.45197 1.07060 1.04840 1.65873 1.21902 0.85200 0.93515 1.03520 1.16145 0.80822 0.84919 0.83097 1.91051 1.76475 1.16286 1.60335 0.90730 0.89235 0.89244 0.79102 0.76297 0.90985 0.90757 0.89951 0.91103 0.95168 0.90707 0.83183 0.93799 0.89526 0.77430 0.91791 0.91284 0.89959 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.32 11.01 59.84 0.66 0.98 16 2 N -0.52 -3.62 3.12 -128.78 -0.40 -4.02 16 3 C 0.06 0.28 10.91 -16.34 -0.18 0.10 16 4 C -0.04 -0.29 6.88 -81.91 -0.56 -0.85 16 5 C 0.59 5.14 7.79 -12.86 -0.10 5.04 16 6 O -0.53 -6.43 14.83 5.19 0.08 -6.35 16 7 N -0.72 -4.34 5.54 -61.62 -0.34 -4.68 16 8 C 0.12 0.87 5.67 -4.04 -0.02 0.85 16 9 C -0.13 -0.96 5.59 -26.73 -0.15 -1.11 16 10 C 0.06 0.63 5.69 -3.82 -0.02 0.61 16 11 N -0.67 -9.81 6.13 -115.06 -0.70 -10.51 16 12 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 13 C 0.44 10.11 7.82 -10.99 -0.09 10.02 16 14 O -0.58 -15.47 15.78 5.55 0.09 -15.38 16 15 N -0.56 -14.01 5.29 -10.96 -0.06 -14.06 16 16 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 17 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 20 Si 0.93 20.73 29.55 -169.99 -5.02 15.70 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 N -0.51 -4.99 3.21 -124.82 -0.40 -5.39 16 25 C 0.10 0.85 10.57 59.85 0.63 1.48 16 26 C 0.65 7.00 8.49 -87.07 -0.74 6.26 16 27 O -0.56 -7.97 17.59 5.17 0.09 -7.88 16 28 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.06 8.14 -51.93 -0.42 -0.37 16 30 H 0.09 0.38 8.04 -51.93 -0.42 -0.03 16 31 H 0.19 0.09 7.37 -52.48 -0.39 -0.30 16 32 H 0.40 1.24 7.32 -40.82 -0.30 0.94 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.35 5.22 8.43 -39.29 -0.33 4.89 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 46 H 0.10 0.88 6.45 -51.92 -0.33 0.54 16 LS Contribution 395.79 15.07 5.96 5.96 Total: -1.00 -37.49 395.79 -7.50 -44.99 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -6.67 Total: 8.81 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: -0.84 Total: 16.28 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: -1.18 Total: -62.13 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: 0.26 Total: -29.61 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.49 -7.50 -44.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177103525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.568 kcal (2) G-P(sol) polarization free energy of solvation -37.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds