Wall clock time and date at job start Sat Apr 11 2020 05:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37020 * 125.65253 * 2 1 4 4 C 1.35141 * 107.87847 * 180.14660 * 3 2 1 5 5 C 1.46656 * 126.37821 * 179.87633 * 4 3 2 6 6 O 1.21704 * 120.00006 * 179.68861 * 5 4 3 7 7 N 1.34777 * 119.99952 * 359.69426 * 5 4 3 8 8 C 1.46506 * 119.99873 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47035 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.46969 * 179.97438 * 9 8 7 11 11 N 1.46905 * 109.46987 * 179.97438 * 10 9 8 12 12 C 1.46895 * 111.00171 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47199 * 180.02562 * 12 11 10 14 14 O 1.21284 * 120.00083 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99867 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00071 * 180.02562 * 15 13 12 17 17 H 1.08004 * 119.99830 * 359.97438 * 16 15 13 18 18 C 1.38955 * 120.00166 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99933 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99744 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47248 * 60.00713 * 20 18 16 22 22 H 1.48505 * 109.46936 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47370 * 300.00129 * 20 18 16 24 24 N 1.39839 * 107.24558 * 359.61653 * 4 3 2 25 25 C 1.46499 * 126.18355 * 180.23960 * 24 4 3 26 26 C 1.34626 * 125.65408 * 179.71428 * 2 1 3 27 27 O 1.21725 * 125.72726 * 359.97438 * 26 2 1 28 28 H 1.09004 * 109.47615 * 270.27991 * 1 2 3 29 29 H 1.09001 * 109.47348 * 30.28630 * 1 2 3 30 30 H 1.09005 * 109.46829 * 150.28209 * 1 2 3 31 31 H 1.08006 * 126.06071 * 0.02562 * 3 2 1 32 32 H 0.96999 * 120.00047 * 359.97438 * 7 5 4 33 33 H 1.09004 * 109.47073 * 299.99562 * 8 7 5 34 34 H 1.09000 * 109.47212 * 59.99645 * 8 7 5 35 35 H 1.09004 * 109.46930 * 299.99770 * 9 8 7 36 36 H 1.09004 * 109.47059 * 59.99372 * 9 8 7 37 37 H 1.08992 * 109.47534 * 299.99582 * 10 9 8 38 38 H 1.08996 * 109.47134 * 60.00388 * 10 9 8 39 39 H 1.00902 * 110.99423 * 56.04590 * 11 10 9 40 40 H 1.09002 * 109.47087 * 300.00137 * 12 11 10 41 41 H 1.09001 * 109.46853 * 60.00161 * 12 11 10 42 42 H 0.97005 * 120.00552 * 0.02562 * 15 13 12 43 43 H 0.96994 * 120.00070 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.47123 * 89.99975 * 25 24 4 45 45 H 1.09004 * 109.46845 * 210.00169 * 25 24 4 46 46 H 1.09007 * 109.47340 * 329.99766 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2636 1.1134 0.0000 4 6 3.5505 0.7008 -0.0033 5 6 4.7392 1.5597 -0.0070 6 8 5.8497 1.0618 -0.0041 7 7 4.6019 2.9004 -0.0136 8 6 5.7894 3.7584 -0.0179 9 6 5.3580 5.2263 -0.0258 10 6 6.5982 6.1223 -0.0297 11 7 6.1840 7.5317 -0.0378 12 6 7.3513 8.4235 -0.0423 13 6 6.8879 9.8574 -0.0500 14 8 5.7020 10.1116 -0.0511 15 7 7.7914 10.8575 -0.0557 16 6 7.3699 12.1621 -0.0621 17 1 6.3138 12.3884 -0.0631 18 6 8.3014 13.1932 -0.0674 19 7 9.5863 12.9179 -0.0657 20 14 7.7270 14.9706 -0.0770 21 1 6.9085 15.2329 1.1341 22 1 8.9071 15.8721 -0.0822 23 1 6.9088 15.2200 -1.2909 24 7 3.5376 -0.6975 0.0036 25 6 4.7120 -1.5732 0.0080 26 6 2.2496 -1.0939 0.0055 27 8 1.8610 -2.2474 0.0116 28 1 -0.3634 0.0050 1.0277 29 1 -0.3634 0.8874 -0.5183 30 1 -0.3633 -0.8926 -0.5095 31 1 1.9247 2.1389 0.0004 32 1 3.7168 3.2973 -0.0163 33 1 6.3849 3.5591 0.8731 34 1 6.3848 3.5503 -0.9069 35 1 4.7628 5.4253 -0.9170 36 1 4.7623 5.4347 0.8629 37 1 7.1930 5.9233 0.8617 38 1 7.1941 5.9140 -0.9182 39 1 5.5765 7.7345 0.7419 40 1 7.9515 8.2408 0.8490 41 1 7.9523 8.2307 -0.9310 42 1 8.7399 10.6543 -0.0552 43 1 10.2365 13.6376 -0.0698 44 1 5.0032 -1.7853 1.0367 45 1 4.4712 -2.5064 -0.5013 46 1 5.5354 -1.0795 -0.5083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177103525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:07 Heat of formation + Delta-G solvation = -81.134581 kcal Electronic energy + Delta-G solvation = -27580.616538 eV Core-core repulsion = 23312.481244 eV Total energy + Delta-G solvation = -4268.135294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.53772 -40.55430 -40.11406 -38.05274 -37.60737 -36.50320 -36.02398 -35.59905 -33.28261 -32.77700 -31.31664 -29.36147 -28.28195 -27.11574 -26.39921 -24.86373 -23.77649 -22.54881 -21.81949 -21.40003 -21.00478 -19.88160 -19.06584 -17.91255 -17.86100 -17.63587 -17.19623 -17.03658 -16.57800 -16.37822 -16.30556 -16.04080 -15.89386 -15.46349 -15.39181 -15.05862 -14.97137 -14.87133 -14.45987 -14.25788 -13.98244 -13.53312 -13.44867 -13.32952 -13.23503 -13.15426 -12.83101 -12.63895 -12.58406 -12.40397 -12.35122 -12.10546 -11.85120 -11.76230 -11.47396 -11.14300 -10.95842 -10.31932 -10.14842 -9.99377 -9.27873 -8.91768 -8.44428 -5.93283 0.30400 1.08907 1.42032 1.44088 1.54830 1.63413 1.81352 2.08221 2.18158 2.31270 2.56666 3.00018 3.23204 3.55744 3.59109 3.92872 3.97115 4.09737 4.16092 4.23230 4.26516 4.31174 4.38011 4.38720 4.51426 4.53313 4.63528 4.65264 4.68091 4.79033 4.80843 4.86723 4.94387 5.20480 5.24079 5.28503 5.42018 5.43010 5.60539 5.92150 6.09904 6.13680 6.47433 6.52140 6.62380 7.01732 7.14713 7.16158 7.59027 8.13922 8.72635 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031980 B = 0.001351 C = 0.001299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.332540 B =20716.305499 C =21547.946736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.518 5.518 3 C 0.097 3.903 4 C -0.074 4.074 5 C 0.594 3.406 6 O -0.577 6.577 7 N -0.700 5.700 8 C 0.130 3.870 9 C -0.116 4.116 10 C 0.060 3.940 11 N -0.683 5.683 12 C 0.064 3.936 13 C 0.437 3.563 14 O -0.623 6.623 15 N -0.574 5.574 16 C -0.336 4.336 17 H 0.080 0.920 18 C -0.013 4.013 19 N -0.921 5.921 20 Si 0.993 3.007 21 H -0.271 1.271 22 H -0.272 1.272 23 H -0.272 1.272 24 N -0.518 5.518 25 C 0.101 3.899 26 C 0.628 3.372 27 O -0.611 6.611 28 H 0.086 0.914 29 H 0.128 0.872 30 H 0.075 0.925 31 H 0.246 0.754 32 H 0.419 0.581 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.078 0.922 39 H 0.346 0.654 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.179 -23.973 0.966 27.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.232 5.232 3 C -0.034 4.034 4 C -0.181 4.181 5 C 0.381 3.619 6 O -0.458 6.458 7 N -0.352 5.352 8 C 0.006 3.994 9 C -0.154 4.154 10 C -0.069 4.069 11 N -0.315 5.315 12 C -0.068 4.068 13 C 0.225 3.775 14 O -0.509 6.509 15 N -0.211 5.211 16 C -0.465 4.465 17 H 0.098 0.902 18 C -0.212 4.212 19 N -0.561 5.561 20 Si 0.817 3.183 21 H -0.196 1.196 22 H -0.197 1.197 23 H -0.197 1.197 24 N -0.238 5.238 25 C -0.040 4.040 26 C 0.330 3.670 27 O -0.492 6.492 28 H 0.105 0.895 29 H 0.146 0.854 30 H 0.094 0.906 31 H 0.262 0.738 32 H 0.257 0.743 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.165 0.835 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.366 -24.873 0.288 28.238 hybrid contribution 0.567 0.657 0.893 1.245 sum -12.798 -24.216 1.181 27.416 Atomic orbital electron populations 1.22239 0.72142 1.06128 1.04950 1.45226 1.09363 1.05459 1.63180 1.22923 0.86327 0.94885 0.99216 1.19711 0.94905 0.83346 1.20147 1.16784 0.86446 0.82439 0.76211 1.90817 1.27558 1.75012 1.52373 1.45459 1.11516 1.03994 1.74213 1.21244 0.87002 0.88638 1.02482 1.21595 0.98019 0.91288 1.04475 1.21926 0.97266 0.86137 1.01558 1.60050 1.16922 1.02965 1.51579 1.21529 0.93496 0.88744 1.03068 1.20916 0.86224 0.88261 0.82132 1.90479 1.18335 1.85441 1.56664 1.41948 1.08820 1.05300 1.65067 1.19656 0.94045 0.82804 1.50038 0.90183 1.26035 0.94888 1.04049 0.96258 1.69664 1.00970 1.35221 1.50283 0.84988 0.77734 0.76650 0.78963 1.19624 1.19650 1.19728 1.45298 1.06921 1.06008 1.65559 1.21859 0.85083 0.93509 1.03578 1.16447 0.81451 0.85282 0.83820 1.90995 1.77342 1.18281 1.62598 0.89536 0.85370 0.90566 0.73808 0.74266 0.91537 0.91524 0.89782 0.89939 0.94122 0.90400 0.83529 0.91612 0.87912 0.76996 0.91337 0.91075 0.90057 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 11.01 127.77 1.41 1.77 16 2 N -0.52 -6.05 3.12 -679.65 -2.12 -8.17 16 3 C 0.10 0.63 10.91 83.17 0.91 1.54 16 4 C -0.07 -1.05 6.88 39.35 0.27 -0.78 16 5 C 0.59 9.53 7.79 86.44 0.67 10.20 16 6 O -0.58 -13.91 14.83 -4.36 -0.06 -13.98 16 7 N -0.70 -6.61 5.54 -467.07 -2.59 -9.20 16 8 C 0.13 1.56 5.67 86.38 0.49 2.05 16 9 C -0.12 -1.38 5.59 30.59 0.17 -1.21 16 10 C 0.06 1.08 5.69 86.30 0.49 1.57 16 11 N -0.68 -18.60 6.13 -517.95 -3.17 -21.78 16 12 C 0.06 2.03 6.17 85.56 0.53 2.56 16 13 C 0.44 19.99 7.82 87.66 0.69 20.67 16 14 O -0.62 -33.17 15.78 -3.04 -0.05 -33.22 16 15 N -0.57 -28.74 5.29 -306.99 -1.62 -30.36 16 16 C -0.34 -18.72 9.68 84.04 0.81 -17.91 16 17 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 18 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 19 N -0.92 -48.95 13.05 21.66 0.28 -48.67 16 20 Si 0.99 42.06 29.55 68.60 2.03 44.08 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 24 N -0.52 -10.21 3.21 -667.04 -2.14 -12.35 16 25 C 0.10 1.85 10.57 127.77 1.35 3.20 16 26 C 0.63 13.57 8.49 179.11 1.52 15.09 16 27 O -0.61 -18.01 17.59 -4.43 -0.08 -18.09 16 28 H 0.09 0.21 8.14 -2.38 -0.02 0.19 16 29 H 0.13 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H 0.08 0.58 8.04 -2.38 -0.02 0.56 16 31 H 0.25 -1.28 7.37 -2.91 -0.02 -1.30 16 32 H 0.42 0.87 7.32 -92.71 -0.68 0.20 16 33 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 37 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.35 9.74 8.43 -89.69 -0.76 8.99 16 40 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 42 H 0.40 18.84 7.90 -92.70 -0.73 18.11 16 43 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.08 1.43 8.08 -2.38 -0.02 1.41 16 46 H 0.10 1.82 6.45 -2.38 -0.02 1.80 16 Total: -1.00 -84.87 395.79 -0.88 -85.75 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -1.13 Total: 27.42 kcal Atomic # 6 Polarization: 28.79 SS G_CDS: 9.78 Total: 38.56 kcal Atomic # 7 Polarization: -119.16 SS G_CDS: -11.37 Total: -130.53 kcal Atomic # 8 Polarization: -65.09 SS G_CDS: -0.19 Total: -65.28 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -84.87 -0.88 -85.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177103525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.612 kcal (2) G-P(sol) polarization free energy of solvation -84.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds