Wall clock time and date at job start Sat Apr 11 2020 05:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36939 * 119.99995 * 2 1 4 4 H 1.07994 * 119.99969 * 161.16730 * 3 2 1 5 5 C 1.38813 * 120.00045 * 340.89855 * 3 2 1 6 6 N 1.31620 * 119.99639 * 346.72914 * 5 3 2 7 7 Si 1.86797 * 120.00161 * 166.73450 * 5 3 2 8 8 H 1.48496 * 109.47108 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47036 * 119.99578 * 7 5 3 10 10 H 1.48492 * 109.47148 * 239.99578 * 7 5 3 11 11 C 1.46491 * 120.00004 * 179.97438 * 2 1 3 12 12 H 1.09004 * 110.64414 * 183.13980 * 11 2 1 13 13 C 1.55157 * 110.71951 * 306.47832 * 11 2 1 14 14 C 1.54914 * 101.58199 * 153.86443 * 13 11 2 15 15 N 1.47427 * 104.83164 * 322.99100 * 14 13 11 16 16 C 1.34776 * 125.64728 * 204.09041 * 15 14 13 17 17 O 1.21276 * 119.99997 * 180.02562 * 16 15 14 18 18 C 1.50699 * 119.99910 * 0.04329 * 16 15 14 19 19 C 1.53008 * 109.46911 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.47024 * 180.02562 * 19 18 16 21 21 N 1.46501 * 109.47004 * 179.97438 * 20 19 18 22 22 C 1.36369 * 125.96180 * 269.68620 * 21 20 19 23 23 O 1.35630 * 125.99095 * 0.04093 * 22 21 20 24 24 N 1.30905 * 108.02008 * 179.88424 * 22 21 20 25 25 N 1.40114 * 107.94061 * 0.38034 * 24 22 21 26 26 C 1.30906 * 107.94128 * 359.75524 * 25 24 22 27 27 O 1.35627 * 125.98943 * 180.02562 * 26 25 24 28 28 C 1.47023 * 108.70285 * 24.12901 * 15 14 13 29 29 H 1.08999 * 109.46704 * 84.81349 * 1 2 3 30 30 H 1.08995 * 109.47147 * 204.81433 * 1 2 3 31 31 H 1.08999 * 109.47110 * 324.81531 * 1 2 3 32 32 H 0.97005 * 119.99401 * 180.02562 * 6 5 3 33 33 H 1.08996 * 111.00521 * 271.93953 * 13 11 2 34 34 H 1.08997 * 111.00717 * 35.79034 * 13 11 2 35 35 H 1.08998 * 110.37053 * 204.15026 * 14 13 11 36 36 H 1.08998 * 110.45826 * 81.87536 * 14 13 11 37 37 H 1.09001 * 109.47490 * 299.99548 * 18 16 15 38 38 H 1.09000 * 109.46992 * 60.00285 * 18 16 15 39 39 H 1.08998 * 109.46413 * 299.99538 * 19 18 16 40 40 H 1.08992 * 109.46981 * 59.99663 * 19 18 16 41 41 H 1.09000 * 109.46805 * 299.99720 * 20 19 18 42 42 H 1.09001 * 109.47481 * 59.99337 * 20 19 18 43 43 H 0.96696 * 113.99939 * 89.99401 * 23 22 21 44 44 H 0.96691 * 114.00339 * 269.97936 * 27 26 25 45 45 H 1.09000 * 109.87916 * 239.52208 * 28 15 14 46 46 H 1.08996 * 110.01288 * 118.42895 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1863 1.2110 0.3019 5 6 1.5130 2.3550 -0.3934 6 7 0.3510 2.2964 -1.0087 7 14 2.3054 4.0113 -0.0497 8 1 3.5996 3.8054 0.6488 9 1 2.5420 4.7224 -1.3318 10 1 1.4044 4.8227 0.8074 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0922 0.0564 13 6 1.7248 -2.1749 1.1679 14 6 2.0499 -3.5860 0.6174 15 7 1.7501 -3.5071 -0.8239 16 6 1.4406 -4.5496 -1.6200 17 8 1.2120 -4.3669 -2.7970 18 6 1.3783 -5.9423 -1.0477 19 6 1.0098 -6.9325 -2.1544 20 6 0.9459 -8.3464 -1.5732 21 7 0.5925 -9.2944 -2.6327 22 6 -0.6707 -9.6745 -2.9786 23 8 -1.8194 -9.2406 -2.4026 24 7 -0.5804 -10.5289 -3.9662 25 7 0.7781 -10.7096 -4.2576 26 6 1.4695 -9.9552 -3.4413 27 8 2.8212 -9.8491 -3.4062 28 6 1.8455 -2.1029 -1.2491 29 1 -0.3633 0.0929 -1.0235 30 1 -0.3633 -0.9327 0.4313 31 1 -0.3633 0.8399 0.5921 32 1 -0.0938 3.1133 -1.2839 33 1 2.2915 -1.9697 2.0760 34 1 0.6550 -2.0607 1.3427 35 1 1.4184 -4.3346 1.0958 36 1 3.1023 -3.8227 0.7736 37 1 2.3502 -6.2081 -0.6318 38 1 0.6243 -5.9785 -0.2614 39 1 0.0380 -6.6669 -2.5706 40 1 1.7640 -6.8960 -2.9404 41 1 1.9174 -8.6121 -1.1566 42 1 0.1915 -8.3825 -0.7873 43 1 -2.1931 -8.4508 -2.8167 44 1 3.2501 -10.4816 -2.8138 45 1 0.8901 -1.7736 -1.6577 46 1 2.6275 -1.9930 -2.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191050561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:24 Heat of formation + Delta-G solvation = 9.307232 kcal Electronic energy + Delta-G solvation = -29209.944724 eV Core-core repulsion = 24945.731281 eV Total energy + Delta-G solvation = -4264.213443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.64611 -39.95619 -38.58072 -37.72791 -37.48640 -36.00022 -34.89368 -32.79542 -31.67956 -29.95998 -29.84077 -28.55390 -27.08771 -26.12370 -23.99510 -23.16271 -22.66199 -22.44197 -22.00257 -19.47840 -19.29200 -19.15372 -18.86540 -17.27626 -17.16222 -17.08214 -16.58099 -16.28808 -15.82542 -15.59939 -15.04781 -14.73536 -14.51474 -14.01076 -13.53494 -13.47212 -13.37300 -13.05600 -12.93322 -12.82168 -12.66370 -12.45199 -12.23469 -12.14642 -11.93870 -11.65766 -11.59088 -11.38126 -10.99358 -10.89401 -10.88344 -10.65015 -10.50989 -10.41978 -10.33634 -9.97035 -9.89038 -9.82544 -9.74702 -8.64656 -8.42639 -6.94098 -5.82698 -3.27707 1.12594 1.33162 1.84798 2.69000 2.83281 3.04326 3.31891 3.38640 3.40435 3.41260 3.95561 4.18292 4.40028 4.45063 4.64689 4.73247 4.76836 4.86128 4.88015 4.89643 5.10284 5.15529 5.24181 5.26331 5.40797 5.50710 5.57008 5.67579 5.71993 5.75818 5.79371 5.88827 6.23228 6.25860 6.41625 6.56713 6.60664 6.73587 6.76685 6.90278 7.30248 7.50443 7.63202 7.69467 7.72720 8.23552 8.27755 9.11542 9.74144 10.20902 11.21973 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026701 B = 0.001893 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.404155 B =14791.521770 C =14985.163420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.587 5.587 3 C -0.260 4.260 4 H 0.073 0.927 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.101 3.899 15 N -0.612 5.612 16 C 0.521 3.479 17 O -0.546 6.546 18 C -0.131 4.131 19 C -0.119 4.119 20 C 0.101 3.899 21 N -0.510 5.510 22 C 0.408 3.592 23 O -0.437 6.437 24 N -0.297 5.297 25 N -0.298 5.298 26 C 0.407 3.593 27 O -0.433 6.433 28 C 0.085 3.915 29 H 0.029 0.971 30 H 0.001 0.999 31 H 0.049 0.951 32 H 0.253 0.747 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.415 0.585 44 H 0.411 0.589 45 H 0.072 0.928 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.245 -23.053 5.427 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.307 5.307 3 C -0.390 4.390 4 H 0.091 0.909 5 C -0.197 4.197 6 N -0.550 5.550 7 Si 0.738 3.262 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.216 1.216 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.022 4.022 15 N -0.346 5.346 16 C 0.309 3.691 17 O -0.424 6.424 18 C -0.172 4.172 19 C -0.158 4.158 20 C -0.022 4.022 21 N -0.230 5.230 22 C 0.098 3.902 23 O -0.238 6.238 24 N -0.142 5.142 25 N -0.142 5.142 26 C 0.097 3.903 27 O -0.233 6.233 28 C -0.040 4.040 29 H 0.047 0.953 30 H 0.019 0.981 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.274 0.726 44 H 0.269 0.731 45 H 0.091 0.909 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.600 -23.840 3.545 24.156 hybrid contribution 0.753 2.121 1.331 2.615 sum 2.354 -21.719 4.876 22.384 Atomic orbital electron populations 1.20831 0.82234 0.95639 0.99603 1.43977 1.02030 0.99920 1.84823 1.19295 0.96334 0.84522 1.38817 0.90932 1.25010 0.97555 0.98555 0.98557 1.70111 1.16825 1.26721 1.41366 0.86132 0.78551 0.83948 0.77567 1.20277 1.21683 1.21561 1.21338 0.96391 0.85961 0.90090 0.90351 1.23354 1.02899 0.93160 1.00004 1.22338 1.00075 0.99206 0.80625 1.48596 1.67937 1.08081 1.10007 1.20110 0.77211 0.85757 0.86045 1.90726 1.50028 1.85437 1.16179 1.21510 1.04203 0.92281 0.99223 1.21677 1.04460 0.91045 0.98636 1.22034 1.03664 0.88109 0.88441 1.47151 1.06781 1.37765 1.31262 1.21341 0.80003 0.95831 0.93025 1.84916 1.31591 1.50274 1.56972 1.78379 1.07410 1.17444 1.10920 1.78371 0.95991 1.19339 1.20529 1.21325 0.84279 0.93797 0.90879 1.84999 1.09190 1.61255 1.67855 1.22961 1.02334 0.78600 1.00055 0.95260 0.98111 0.93264 0.93631 0.90315 0.90321 0.91351 0.91551 0.88625 0.88610 0.90552 0.89894 0.88335 0.87923 0.72591 0.73104 0.90947 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.78 7.79 59.85 0.47 4.24 16 2 N -0.59 -13.75 2.94 -171.39 -0.50 -14.26 16 3 C -0.26 -6.78 9.67 -15.06 -0.15 -6.93 16 4 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 5 C 0.00 0.05 5.11 -17.43 -0.09 -0.04 16 6 N -0.91 -25.70 10.50 55.49 0.58 -25.12 16 7 Si 0.91 21.16 29.57 -169.99 -5.03 16.13 16 8 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 11 C 0.17 3.18 3.45 -66.10 -0.23 2.96 16 12 H 0.08 1.42 7.90 -51.93 -0.41 1.01 16 13 C -0.15 -2.16 6.59 -24.58 -0.16 -2.33 16 14 C 0.10 1.10 6.69 -2.53 -0.02 1.08 16 15 N -0.61 -8.80 3.33 -170.52 -0.57 -9.37 16 16 C 0.52 7.25 7.85 -10.99 -0.09 7.16 16 17 O -0.55 -10.09 16.31 5.56 0.09 -10.00 16 18 C -0.13 -1.02 4.71 -27.88 -0.13 -1.15 16 19 C -0.12 -0.93 4.83 -26.73 -0.13 -1.06 16 20 C 0.10 0.51 6.01 -4.04 -0.02 0.49 16 21 N -0.51 -4.09 2.76 -120.06 -0.33 -4.42 16 22 C 0.41 3.89 9.15 -88.81 -0.81 3.07 16 23 O -0.44 -2.98 13.57 -18.59 -0.25 -3.23 16 24 N -0.30 -3.75 12.72 29.65 0.38 -3.38 16 25 N -0.30 -3.74 12.72 29.65 0.38 -3.37 16 26 C 0.41 3.82 9.15 -88.81 -0.81 3.01 16 27 O -0.43 -2.81 13.58 -18.58 -0.25 -3.06 16 28 C 0.09 1.56 6.51 -3.06 -0.02 1.54 16 29 H 0.03 0.76 7.38 -51.93 -0.38 0.38 16 30 H 0.00 0.01 6.03 -51.93 -0.31 -0.30 16 31 H 0.05 1.25 7.08 -51.93 -0.37 0.88 16 32 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.19 6.05 -51.93 -0.31 0.88 16 35 H 0.07 0.55 7.48 -51.93 -0.39 0.16 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.54 7.85 -51.93 -0.41 0.13 16 39 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.08 0.85 8.10 -51.93 -0.42 0.42 16 41 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.42 1.01 9.06 45.56 0.41 1.42 16 44 H 0.41 0.27 9.06 45.56 0.41 0.68 16 45 H 0.07 1.55 7.13 -51.93 -0.37 1.18 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -37.36 383.00 -6.98 -44.34 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -5.05 Total: -2.10 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: -2.19 Total: 12.05 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -0.06 Total: -59.90 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.41 Total: -16.29 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.36 -6.98 -44.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191050561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.646 kcal (2) G-P(sol) polarization free energy of solvation -37.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds